Volume 20; Issue 9

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Bioinformatics
Volume 20; Issue 9

Bioinformatics

Volume 20; Issue 9

1

TANDEM: matching proteins with tandem mass spectra

Craig, R., Beavis, R. C.

Journal:

Year:

2004

Language:

english

File:

PDF, 33 KB

english, 2004

2

WebSIDD: server for predicting stress-induced duplex destabilized (SIDD) sites in superhelical DNA

Bi, C., Benham, C. J.

Journal:

Year:

2004

Language:

english

File:

PDF, 80 KB

english, 2004

3

Open source clustering software

de Hoon, M.J.L., Imoto, S., Nolan, J., Miyano, S.

Journal:

Year:

2004

Language:

english

File:

PDF, 45 KB

english, 2004

4

Simple sequence repeat marker loci discovery using SSR primer

Robinson, A. J., Love, C. G., Batley, J., Barker, G., Edwards, D.

Journal:

Year:

2004

Language:

english

File:

PDF, 36 KB

english, 2004

5

Align-m--a new algorithm for multiple alignment of highly divergent sequences

Van Walle, I., Lasters, I., Wyns, L.

Journal:

Year:

2004

Language:

english

File:

PDF, 362 KB

english, 2004

6

PartiGene--constructing partial genomes

Parkinson, J., Anthony, A., Wasmuth, J., Schmid, R., Hedley, A., Blaxter, M.

Journal:

Year:

2004

Language:

english

File:

PDF, 339 KB

english, 2004

7

Modeling T-cell activation using gene expression profiling and state-space models

Rangel, C., Angus, J., Ghahramani, Z., Lioumi, M., Sotheran, E., Gaiba, A., Wild, D. L., Falciani, F.

Journal:

Year:

2004

Language:

english

File:

PDF, 238 KB

english, 2004

8

Improved prediction of MHC class I and class II epitopes using a novel Gibbs sampling approach

Nielsen, M., Lundegaard, C., Worning, P., Hvid, C. S., Lamberth, K., Buus, S., Brunak, S., Lund, O.

Journal:

Year:

2004

Language:

english

File:

PDF, 268 KB

english, 2004

9

GeneSyn: a tool for detecting conserved gene order across genomes

Pavesi, G., Mauri, G., Iannelli, F., Gissi, C., Pesole, G.

Journal:

Year:

2004

Language:

english

File:

PDF, 48 KB

english, 2004

10

PINdb: a database of nuclear protein complexes from human and yeast

Luc, P.-V., Tempst, P.

Journal:

Year:

2004

Language:

english

File:

PDF, 223 KB

english, 2004

11

GOstat: find statistically overrepresented Gene Ontologies within a group of genes

Beissbarth, T., Speed, T. P.

Journal:

Year:

2004

Language:

english

File:

PDF, 97 KB

english, 2004

12

Enhanced homology searching through genome reading frame predetermination

Yuan, J., Bush, B., Elbrecht, A., Liu, Y., Zhang, T., Zhao, W., Blevins, R.

Journal:

Year:

2004

Language:

english

File:

PDF, 184 KB

english, 2004

13

A hint to search for metalloproteins in gene banks

Andreini, C., Bertini, I., Rosato, A.

Journal:

Year:

2004

Language:

english

File:

PDF, 116 KB

english, 2004

14

Analysis of disturbed images

Kauer, G., Blocker, H.

Journal:

Year:

2004

Language:

english

File:

PDF, 859 KB

english, 2004

15

Analysis of variance components in gene expression data

Chen, J. J., Delongchamp, R. R., Tsai, C.-A., Hsueh, H.-m., Sistare, F., Thompson, K. L., Desai, V. G., Fuscoe, J. C.

Journal:

Year:

2004

Language:

english

File:

PDF, 227 KB

english, 2004

16

ParSeq: searching motifs with structural and biochemical properties

Schmollinger, M., Fischer, I., Nerz, C., Pinkenburg, S., Gotz, F., Kaufmann, M., Lange, K.-J., Reuter, R., Rosenstiel, W., Zell, A.

Journal:

Year:

2004

Language:

english

File:

PDF, 42 KB

english, 2004

17

galaxie--CGI scripts for sequence identification through automated phylogenetic analysis

Nilsson, R. H., Larsson, K.-H., Ursing, B. M.

Journal:

Year:

2004

Language:

english

File:

PDF, 64 KB

english, 2004

18

Site2genome: locating short DNA sequences in whole genomes

Frith, M. C., Halees, A. S., Hansen, U., Weng, Z.

Journal:

Year:

2004

Language:

english

File:

PDF, 34 KB

english, 2004

19

NetAffx Gene Ontology Mining Tool: a visual approach for microarray data analysis

Cheng, J., Sun, S., Tracy, A., Hubbell, E., Morris, J., Valmeekam, V., Kimbrough, A., Cline, M. S., Liu, G., Shigeta, R., Kulp, D., Siani-Rose, M. A.

Journal:

Year:

2004

Language:

english

File:

PDF, 73 KB

english, 2004

20

Automatic prediction of protein domains from sequence information using a hybrid learning system

Nagarajan, N., Yona, G.

Journal:

Year:

2004

Language:

english

File:

PDF, 2.04 MB

english, 2004

21

ToPNet--an application for interactive analysis of expression data and biological networks

Hanisch, D., Sohler, F., Zimmer, R.

Journal:

Year:

2004

Language:

english

File:

PDF, 85 KB

english, 2004