Volume 22; Issue 24

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Bioinformatics
Volume 22; Issue 24

Bioinformatics

Volume 22; Issue 24

1

COPASI--a COmplex PAthway SImulator

Hoops, S., Sahle, S., Gauges, R., Lee, C., Pahle, J., Simus, N., Singhal, M., Xu, L., Mendes, P., Kummer, U.

Journal:

Year:

2006

Language:

english

File:

PDF, 534 KB

english, 2006

2

An algorithm for modularity analysis of directed and weighted biological networks based on edge-betweenness centrality

Yoon, J., Blumer, A., Lee, K.

Journal:

Year:

2006

Language:

english

File:

PDF, 151 KB

english, 2006

3

Hypothesis testing approaches to the exon prediction problem

Vilardell, M., Sanchez-Pla, A.

Journal:

Year:

2006

Language:

english

File:

PDF, 140 KB

english, 2006

4

Kalman filtering for disease-state estimation from microarray data

Kelemen, J. Z., Kertesz-Farkas, A., Kocsor, A., Puskas, L. G.

Journal:

Year:

2006

Language:

english

File:

PDF, 373 KB

english, 2006

5

Pattern locator: a new tool for finding local sequence patterns in genomic DNA sequences

Mrazek, J., Xie, S.

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Year:

2006

Language:

english

File:

PDF, 59 KB

english, 2006

6

GARD: a genetic algorithm for recombination detection

Kosakovsky Pond, S. L., Posada, D., Gravenor, M. B., Woelk, C. H., Frost, S. D.W.

Journal:

Year:

2006

Language:

english

File:

PDF, 174 KB

english, 2006

7

Building an abbreviation dictionary using a term recognition approach

Okazaki, N., Ananiadou, S.

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Year:

2006

Language:

english

File:

PDF, 194 KB

english, 2006

8

Measuring covariation in RNA alignments: physical realism improves information measures

Lindgreen, S., Gardner, P. P., Krogh, A.

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Year:

2006

Language:

english

File:

PDF, 133 KB

english, 2006

9

Support vector machines for prediction of dihedral angle regions

Zimmermann, O., Hansmann, U. H. E.

Journal:

Year:

2006

Language:

english

File:

PDF, 209 KB

english, 2006

10

SequenceLDhot: detecting recombination hotspots

Journal:

Year:

2006

Language:

english

File:

PDF, 113 KB

english, 2006

11

Design and implementation of a tool for translating SBML into the biochemical stochastic -calculus

Eccher, C., Priami, C.

Journal:

Year:

2006

Language:

english

File:

PDF, 247 KB

english, 2006

12

A Gibbs sampler for the identification of gene expression and network connectivity consistency

Brynildsen, M. P., Tran, L. M., Liao, J. C.

Journal:

Year:

2006

Language:

english

File:

PDF, 409 KB

english, 2006

13

Prediction of oxidoreductase-catalyzed reactions based on atomic properties of metabolites

Mu, F., Unkefer, P. J., Unkefer, C. J., Hlavacek, W. S.

Journal:

Year:

2006

Language:

english

File:

PDF, 234 KB

english, 2006

14

MUSA: a parameter free algorithm for the identification of biologically significant motifs

Mendes, N. D., Casimiro, A. C., Santos, P. M., Sa-Correia, I., Oliveira, A. L., Freitas, A. T.

Journal:

Year:

2006

Language:

english

File:

PDF, 203 KB

english, 2006

15

Estimation of false discovery proportion under general dependence

Pawitan, Y., Calza, S., Ploner, A.

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Year:

2006

Language:

english

File:

PDF, 303 KB

english, 2006

16

A Novel algorithm for identifying low-complexity regions in a protein sequence

Li, X., Kahveci, T.

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Year:

2006

Language:

english

File:

PDF, 310 KB

english, 2006

17

P2BAT: a massive parallel implementation of PBAT for genome-wide association studies in R

Hoffmann, T., Lange, C.

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Year:

2006

Language:

english

File:

PDF, 292 KB

english, 2006

18

Analysis of HIV-1 pol sequences using Bayesian Networks: implications for drug resistance

Deforche, K., Silander, T., Camacho, R., Grossman, Z ., Soares, M. A., Van Laethem, K., Kantor, R., Moreau, Y., Vandamme, A.-M.

Journal:

Year:

2006

Language:

english

File:

PDF, 187 KB

english, 2006

19

Maximum likelihood inference of imprinting and allele-specific expression from EST data

Seoighe, C., Nembaware, V., Scheffler, K.

Journal:

Year:

2006

Language:

english

File:

PDF, 190 KB

english, 2006

20

High-resolution spatial normalization for microarrays containing embedded technical replicates

Yuan, D. S., Irizarry, R. A.

Journal:

Year:

2006

Language:

english

File:

PDF, 380 KB

english, 2006

21

Bioinformatics in the human interactome project

Ideker, T., Valencia, A.

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Year:

2006

Language:

english

File:

PDF, 39 KB

english, 2006

22

A supervised hidden markov model framework for efficiently segmenting tiling array data in transcriptional and chIP-chip experiments: systematically incorporating validated biological knowledge

Du, J., Rozowsky, J. S., Korbel, J. O., Zhang, Z. D., Royce, T. E., Schultz, M. H., Snyder, M., Gerstein, M.

Journal:

Year:

2006

Language:

english

File:

PDF, 414 KB

english, 2006