Volume 22; Issue 4

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Bioinformatics
Volume 22; Issue 4

Bioinformatics

Volume 22; Issue 4

1

Systems Biology Toolbox for MATLAB: a computational platform for research in systems biology

Schmidt, H., Jirstrand, M.

Journal:

Year:

2006

Language:

english

File:

PDF, 64 KB

english, 2006

2

Quality classification of tandem mass spectrometry data

Salmi, J., Moulder, R., Filen, J.-J., Nevalainen, O. S., Nyman, T. A., Lahesmaa, R., Aittokallio, T.

Journal:

Year:

2006

Language:

english

File:

PDF, 211 KB

english, 2006

3

Application of compression-based distance measures to protein sequence classification: a methodological study

Kocsor, A., Kertesz-Farkas, A., Kajan, L., Pongor, S.

Journal:

Year:

2006

Language:

english

File:

PDF, 1.54 MB

english, 2006

4

Differential gene expression detection and sample classification using penalized linear regression models

Journal:

Year:

2006

Language:

english

File:

PDF, 133 KB

english, 2006

5

SoDA: implementation of a 3D alignment algorithm for inference of antigen receptor recombinations

Volpe, J. M., Cowell, L. G., Kepler, T. B.

Journal:

Year:

2006

Language:

english

File:

PDF, 131 KB

english, 2006

6

Improved pairwise alignments of proteins in the Twilight Zone using local structure predictions

Huang, Y.-m., Bystroff, C.

Journal:

Year:

2006

Language:

english

File:

PDF, 701 KB

english, 2006

7

A hypothesis-based approach for identifying the binding specificity of regulatory proteins from chromatin immunoprecipitation data

MacIsaac, K. D., Gordon, D. B., Nekludova, L., Odom, D. T., Schreiber, J., Gifford, D. K., Young, R. A., Fraenkel, E.

Journal:

Year:

2006

Language:

english

File:

PDF, 295 KB

english, 2006

8

Ridom TraceEdit: a DNA trace editor and viewer

Rothganger, J., Weniger, M., Weniger, T., Mellmann, A., Harmsen, D.

Journal:

Year:

2006

Language:

english

File:

PDF, 165 KB

english, 2006

9

RNAshapes: an integrated RNA analysis package based on abstract shapes

Steffen, P., Voss, B., Rehmsmeier, M., Reeder, J., Giegerich, R.

Journal:

Year:

2006

Language:

english

File:

PDF, 173 KB

english, 2006

10

MiGenes: a searchable interspecies database of mitochondrial proteins curated using gene ontology annotation

Basu, S., Bremer, E., Zhou, C., Bogenhagen, D. F.

Journal:

Year:

2006

Language:

english

File:

PDF, 323 KB

english, 2006

11

SimShift: Identifying structural similarities from NMR chemical shifts

Ginzinger, S. W., Fischer, J.

Journal:

Year:

2006

Language:

english

File:

PDF, 136 KB

english, 2006

12

FLOSS: flexible ordered subset analysis for linkage mapping of complex traits

Browning, B. L.

Journal:

Year:

2006

Language:

english

File:

PDF, 54 KB

english, 2006

13

EDGE: extraction and analysis of differential gene expression

Leek, J. T., Monsen, E., Dabney, A. R., Storey, J. D.

Journal:

Year:

2006

Language:

english

File:

PDF, 116 KB

english, 2006

14

Multiple Alignment of protein structures and sequences for VMD

Eargle, J., Wright, D., Luthey-Schulten, Z.

Journal:

Year:

2006

Language:

english

File:

PDF, 216 KB

english, 2006

15

GenoMiner: a tool for genome-wide search of coding and non-coding conserved sequence tags

Castrignano, T., De Meo, P. D., Grillo, G., Liuni, S., Mignone, F., Talamo, I. G., Pesole, G.

Journal:

Year:

2006

Language:

english

File:

PDF, 557 KB

english, 2006

16

CMfinder--a covariance model based RNA motif finding algorithm

Yao, Z., Weinberg, Z., Ruzzo, W. L.

Journal:

Year:

2006

Language:

english

File:

PDF, 147 KB

english, 2006

17

Least absolute regression network analysis of the murine osteoblast differentiation network

van Someren, E. P., Vaes, B. L. T., Steegenga, W. T., Sijbers, A. M., Dechering, K. J., Reinders, M. J. T.

Journal:

Year:

2006

Language:

english

File:

PDF, 914 KB

english, 2006

18

eQTL Explorer: integrated mining of combined genetic linkage and expression experiments

Mueller, M., Goel, A., Thimma, M., Dickens, N. J, Aitman, T. J., Mangion, J.

Journal:

Year:

2006

Language:

english

File:

PDF, 220 KB

english, 2006

19

SEAN: SNP prediction and display program utilizing EST sequence clusters

Huntley, D., Baldo, A., Johri, S., Sergot, M.

Journal:

Year:

2006

Language:

english

File:

PDF, 52 KB

english, 2006

20

A simple method to predict protein-binding from aligned sequences--application to MHC superfamily and 2-microglobulin

Duprat, E., Lefranc, M.-P., Gascuel, O.

Journal:

Year:

2006

Language:

english

File:

PDF, 220 KB

english, 2006

21

Survival prediction of diffuse large-B-cell lymphoma based on both clinical and gene expression information

Journal:

Year:

2006

Language:

english

File:

PDF, 181 KB

english, 2006

22

Gene sequence signatures revealed by mining the UniGene affiliation network

Zhang, J., Zhang, L., Coombes, K. R.

Journal:

Year:

2006

Language:

english

File:

PDF, 164 KB

english, 2006

23

Evaluating phylogenetic footprinting for human-rodent comparisons

Sauer, T., Shelest, E., Wingender, E.

Journal:

Year:

2006

Language:

english

File:

PDF, 220 KB

english, 2006