Volume 23; Issue 19

Main
Bioinformatics
Volume 23; Issue 19

Bioinformatics

Volume 23; Issue 19

1

Protein solubility: sequence based prediction and experimental verification

Smialowski, P., Martin-Galiano, A. J., Mikolajka, A., Girschick, T., Holak, T. A., Frishman, D.

Journal:

Year:

2007

Language:

english

File:

PDF, 116 KB

english, 2007

2

A review of feature selection techniques in bioinformatics

Saeys, Y., Inza, I., Larranaga, P.

Journal:

Year:

2007

Language:

english

File:

PDF, 176 KB

english, 2007

3

Data-based identifiability analysis of non-linear dynamical models

Hengl, S., Kreutz, C., Timmer, J., Maiwald, T.

Journal:

Year:

2007

Language:

english

File:

PDF, 307 KB

english, 2007

4

TASSEL: software for association mapping of complex traits in diverse samples

Bradbury, P. J., Zhang, Z., Kroon, D. E., Casstevens, T. M., Ramdoss, Y., Buckler, E. S.

Journal:

Year:

2007

Language:

english

File:

PDF, 194 KB

english, 2007

5

dPattern: transcription factor binding site (TFBS) discovery in human genome using a discriminative pattern analysis

Bae, S.-H., Tang, H., Wu, J., Xie, J., Kim, S.

Journal:

Year:

2007

Language:

english

File:

PDF, 119 KB

english, 2007

6

Short oligonucleotide probes containing G-stacks display abnormal binding affinity on Affymetrix microarrays

Wu, C., Zhao, H., Baggerly, K., Carta, R., Zhang, L.

Journal:

Year:

2007

Language:

english

File:

PDF, 216 KB

english, 2007

7

THOR: targeted high-throughput ortholog reconstructor

Bainbridge, M. N., Warren, R. L., He, A., Bilenky, M., Robertson, A. G., Jones, S. J.M.

Journal:

Year:

2007

Language:

english

File:

PDF, 80 KB

english, 2007

8

Comparative modeling without implicit sequence alignments

Kolinski, A., Gront, D.

Journal:

Year:

2007

Language:

english

File:

PDF, 329 KB

english, 2007

9

Flavitrack: an annotated database of flavivirus sequences

Misra, M., Schein, C. H.

Journal:

Year:

2007

Language:

english

File:

PDF, 89 KB

english, 2007

10

FIST: a sensory domain for diverse signal transduction pathways in prokaryotes and ubiquitin signaling in eukaryotes

Borziak, K., Zhulin, I. B.

Journal:

Year:

2007

Language:

english

File:

PDF, 106 KB

english, 2007

11

VisGenome: visualization of single and comparative genome representations

Jakubowska, J., Hunt, E., Chalmers, M., McBride, M., Dominiczak, A. F.

Journal:

Year:

2007

Language:

english

File:

PDF, 127 KB

english, 2007

12

Improved model-based, platform-independent feature extraction for mass spectrometry

Noy, K., Fasulo, D.

Journal:

Year:

2007

Language:

english

File:

PDF, 289 KB

english, 2007

13

PhylArray: phylogenetic probe design algorithm for microarray

Militon, C., Rimour, S., Missaoui, M., Biderre, C., Barra, V., Hill, D., Mone, A., Gagne, G., Meier, H., Peyretaillade, E., Peyret, P.

Journal:

Year:

2007

Language:

english

File:

PDF, 324 KB

english, 2007

14

Consensus Data Mining (CDM) Protein Secondary Structure Prediction Server: Combining GOR V and Fragment Database Mining (FDM)

Cheng, H., Sen, T. Z., Jernigan, R. L., Kloczkowski, A.

Journal:

Year:

2007

Language:

english

File:

PDF, 81 KB

english, 2007

15

pIPHULA parallel inference of population parameters using a likelihood approach

Schmidt, H. A., von Haeseler, A., Buschbom, J.

Journal:

Year:

2007

Language:

english

File:

PDF, 94 KB

english, 2007

16

Comparative protein structure modeling by combining multiple templates and optimizing sequence-to-structure alignments

Fernandez-Fuentes, N., Rai, B. K., Madrid-Aliste, C. J., Eduardo Fajardo, J., Fiser, A.

Journal:

Year:

2007

Language:

english

File:

PDF, 496 KB

english, 2007

17

DNA reference alignment benchmarks based on tertiary structure of encoded proteins

Carroll, H., Beckstead, W., O'Connor, T., Ebbert, M., Clement, M., Snell, Q., McClellan, D.

Journal:

Year:

2007

Language:

english

File:

PDF, 71 KB

english, 2007

18

Wordom: a program for efficient analysis of molecular dynamics simulations

Seeber, M., Cecchini, M., Rao, F., Settanni, G., Caflisch, A.

Journal:

Year:

2007

Language:

english

File:

PDF, 146 KB

english, 2007

19

PLMaddon: a power-law module for the MatlabTM SBToolbox

Vera, J., Sun, C., Oertel, Y., Wolkenhauer, O.

Journal:

Year:

2007

Language:

english

File:

PDF, 77 KB

english, 2007

20

Polyketide synthase genes and the natural products potential of Dictyostelium discoideum

Zucko, J., Skunca, N., Curk, T., Zupan, B., Long, P.F., Cullum, J., Kessin, R.H., Hranueli, D.

Journal:

Year:

2007

Language:

english

File:

PDF, 264 KB

english, 2007

21

Query-driven module discovery in microarray data

Dhollander, T., Sheng, Q., Lemmens, K., De Moor, B., Marchal, K., Moreau, Y.

Journal:

Year:

2007

Language:

english

File:

PDF, 373 KB

english, 2007

22

Exploring biological network structure using exponential random graph models

Saul, Z. M., Filkov, V.

Journal:

Year:

2007

Language:

english

File:

PDF, 204 KB

english, 2007

23

Log-linear model-based multifactor dimensionality reduction method to detect gene gene interactions

Yeoun Lee, S., Chung, Y., Elston, R. C., Kim, Y., Park, T.

Journal:

Year:

2007

Language:

english

File:

PDF, 145 KB

english, 2007

24

AssociationDB: web-based exploration of genomic association

Seelow, D., Hoffmann, K., Lindner, T. H.

Journal:

Year:

2007

Language:

english

File:

PDF, 109 KB

english, 2007

25

Eu.Gene Analyzer a tool for integrating gene expression data with pathway databases

Cavalieri, D., Castagnini, C., Toti, S., Maciag, K., Kelder, T., Gambineri, L., Angioli, S., Dolara, P.

Journal:

Year:

2007

Language:

english

File:

PDF, 62 KB

english, 2007

26

Simulating association studies: a data-based resampling method for candidate regions or whole genome scans

Wright, F. A., Huang, H., Guan, X., Gamiel, K., Jeffries, C., Barry, W. T., Pardo-Manuel de Villena, F., Sullivan, P. F., Wilhelmsen, K. C., Zou, F.

Journal:

Year:

2007

Language:

english

File:

PDF, 1.15 MB

english, 2007

27

Bayesian inference for dynamic transcriptional regulation; the Hes1 system as a case study

Heron, E. A., Finkenstadt, B., Rand, D. A.

Journal:

Year:

2007

Language:

english

File:

PDF, 709 KB

english, 2007