Volume 23; Issue 9

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Bioinformatics
Volume 23; Issue 9

Bioinformatics

Volume 23; Issue 9

1

Andante: reducing side-chain rotamer search space during comparative modeling using environment-specific substitution probabilities

Smith, R. E., Lovell, S. C., Burke, D. F., Montalvao, R. W., Blundell, T. L.

Journal:

Year:

2007

Language:

english

File:

PDF, 171 KB

english, 2007

2

pcaMethods a bioconductor package providing PCA methods for incomplete data

Stacklies, W., Redestig, H., Scholz, M., Walther, D., Selbig, J.

Journal:

Year:

2007

Language:

english

File:

PDF, 112 KB

english, 2007

3

Codelink: an R package for analysis of GE healthcare gene expression bioarrays

Diez, D., Alvarez, R., Dopazo, A.

Journal:

Year:

2007

Language:

english

File:

PDF, 123 KB

english, 2007

4

Clustering by common friends finds locally significant proteins mediating modules

Andreopoulos, B., An, A., Wang, X., Faloutsos, M., Schroeder, M.

Journal:

Year:

2007

Language:

english

File:

PDF, 312 KB

english, 2007

5

Phylogenetic exploration of bacterial genomic rearrangements

Fremez, R., Faraut, T., Fichant, G., Gouzy, J., Quentin, Y.

Journal:

Year:

2007

Language:

english

File:

PDF, 181 KB

english, 2007

6

AMPer: a database and an automated discovery tool for antimicrobial peptides

Fjell, C. D., Hancock, R. E.W., Cherkasov, A.

Journal:

Year:

2007

Language:

english

File:

PDF, 268 KB

english, 2007

7

NucPred Predicting nuclear localization of proteins

Brameier, M., Krings, A., MacCallum, R. M.

Journal:

Year:

2007

Language:

english

File:

PDF, 102 KB

english, 2007

8

MSVM-RFE: extensions of SVM-RFE for multiclass gene selection on DNA microarray data

Zhou, X., Tuck, D. P.

Journal:

Year:

2007

Language:

english

File:

PDF, 564 KB

english, 2007

9

De novo peptide sequencing using ion peak intensity and amino acid cleavage intensity ratio

Kanazawa, M., Anyoji, H., Ogiwara, A., Nagashima, U.

Journal:

Year:

2007

Language:

english

File:

PDF, 433 KB

english, 2007

10

COBALT: constraint-based alignment tool for multiple protein sequences

Papadopoulos, J. S., Agarwala, R.

Journal:

Year:

2007

Language:

english

File:

PDF, 140 KB

english, 2007

11

Metabolic network properties help assign weights to elementary modes to understand physiological flux distributions

Wang, Q., Yang, Y., Ma, H., Zhao, X.

Journal:

Year:

2007

Language:

english

File:

PDF, 122 KB

english, 2007

12

CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomes

Parra, G., Bradnam, K., Korf, I.

Journal:

Year:

2007

Language:

english

File:

PDF, 352 KB

english, 2007

13

FIVA: Functional Information Viewer and Analyzer extracting biological knowledge from transcriptome data of prokaryotes

Blom, E.-J., Bosman, D. W. J., van Hijum, S. A. F. T., Breitling, R., Tijsma, L., Silvis, R., Roerdink, J. B. T. M., Kuipers, O. P.

Journal:

Year:

2007

Language:

english

File:

PDF, 286 KB

english, 2007

14

Comparative annotation of viral genomes with non-conserved gene structure

de Groot, S., Mailund, T., Hein, J.

Journal:

Year:

2007

Language:

english

File:

PDF, 256 KB

english, 2007

15

Discovery of microRNA mRNA modules via population-based probabilistic learning

Joung, J.-G., Hwang, K.-B., Nam, J.-W., Kim, S.-J., Zhang, B.-T.

Journal:

Year:

2007

Language:

english

File:

PDF, 272 KB

english, 2007

16

A structural alignment kernel for protein structures

Qiu, J., Hue, M., Ben-Hur, A., Vert, J.-P., Noble, W. S.

Journal:

Year:

2007

Language:

english

File:

PDF, 416 KB

english, 2007

17

A computational system to select candidate genes for complex human traits

Gaulton, K. J., Mohlke, K. L., Vision, T. J.

Journal:

Year:

2007

Language:

english

File:

PDF, 204 KB

english, 2007

18

ABCGrid: Application for Bioinformatics Computing Grid

Sun, Y., Zhao, S., Yu, H., Gao, G., Luo, J.

Journal:

Year:

2007

Language:

english

File:

PDF, 78 KB

english, 2007

19

rh_tsp_map 3.0: end-to-end radiation hybrid mapping with improved speed and quality control

Schaffer, A. A., Rice, E. S., Cook, W., Agarwala, R.

Journal:

Year:

2007

Language:

english

File:

PDF, 87 KB

english, 2007

20

Identifying clusters of functionally related genes in genomes

Yi, G., Sze, S.-H., Thon, M. R.

Journal:

Year:

2007

Language:

english

File:

PDF, 262 KB

english, 2007

21

Improving metabolic flux estimation via evolutionary optimization for convex solution space

Chen, J., Zheng, H., Liu, H., Niu, J., Liu, J., Shen, T., Rui, B., Shi, Y.

Journal:

Year:

2007

Language:

english

File:

PDF, 342 KB

english, 2007

22

Semantic Web Service provision: a realistic framework for Bioinformatics programmers

Gordon, P. M.K., Trinh, Q., Sensen, C. W.

Journal:

Year:

2007

Language:

english

File:

PDF, 102 KB

english, 2007

23

Analyzing microarray data using CLANS

Frickey, T., Weiller, G.

Journal:

Year:

2007

Language:

english

File:

PDF, 248 KB

english, 2007