Volume 25; Issue 22

Main
Bioinformatics
Volume 25; Issue 22

Bioinformatics

Volume 25; Issue 22

1

Mobyle: a new full web bioinformatics framework

Neron, B., Menager, H., Maufrais, C., Joly, N., Maupetit, J., Letort, S., Carrere, S., Tuffery, P., Letondal, C.

Journal:

Year:

2009

Language:

english

File:

PDF, 300 KB

english, 2009

2

A dictionary to identify small molecules and drugs in free text

Hettne, K. M., Stierum, R. H., Schuemie, M. J., Hendriksen, P. J. M., Schijvenaars, B. J. A., Mulligen, E. M. v., Kleinjans, J., Kors, J. A.

Journal:

Year:

2009

Language:

english

File:

PDF, 146 KB

english, 2009

3

Mining gene functional networks to improve mass-spectrometry-based protein identification

Ramakrishnan, S. R., Vogel, C., Kwon, T., Penalva, L. O., Marcotte, E. M., Miranker, D. P.

Journal:

Year:

2009

Language:

english

File:

PDF, 301 KB

english, 2009

4

Characterization of 1H NMR spectroscopic data and the generation of synthetic validation sets

Anderson, P. E., Raymer, M. L., Kelly, B. J., Reo, N. V., DelRaso, N. J., Doom, T. E.

Journal:

Year:

2009

Language:

english

File:

PDF, 378 KB

english, 2009

5

Flynet: a genomic resource for Drosophila melanogaster transcriptional regulatory networks

Tian, F., Shah, P. K., Liu, X., Negre, N., Chen, J., Karpenko, O., White, K. P., Grossman, R. L.

Journal:

Year:

2009

Language:

english

File:

PDF, 169 KB

english, 2009

6

De novo computational prediction of non-coding RNA genes in prokaryotic genomes

Tran, T. T., Zhou, F., Marshburn, S., Stead, M., Kushner, S. R., Xu, Y.

Journal:

Year:

2009

Language:

english

File:

PDF, 506 KB

english, 2009

7

CMap 1.01: a comparative mapping application for the Internet

Youens-Clark, K., Faga, B., Yap, I. V., Stein, L., Ware, D.

Journal:

Year:

2009

Language:

english

File:

PDF, 214 KB

english, 2009

8

Predicting homologous signaling pathways using machine learning

Bostan, B., Greiner, R., Szafron, D., Lu, P.

Journal:

Year:

2009

Language:

english

File:

PDF, 308 KB

english, 2009

9

Saint: a lightweight integration environment for model annotation

Lister, A. L., Pocock, M., Taschuk, M., Wipat, A.

Journal:

Year:

2009

Language:

english

File:

PDF, 61 KB

english, 2009

10

digeR: a graphical user interface R package for analyzing 2D-DIGE data

Fan, Y., Murphy, T. B., Watson, R. W. G.

Journal:

Year:

2009

Language:

english

File:

PDF, 142 KB

english, 2009

11

Comparative analysis and unification of domain-domain interaction networks

Bjorkholm, P., Sonnhammer, E. L. L.

Journal:

Year:

2009

Language:

english

File:

PDF, 270 KB

english, 2009

12

A method for visualizing CellML models

Wimalaratne, S. M., Halstead, M. D. B., Lloyd, C. M., Cooling, M. T., Crampin, E. J., Nielsen, P. F.

Journal:

Year:

2009

Language:

english

File:

PDF, 412 KB

english, 2009

13

Rapid detection, classification and accurate alignment of up to a million or more related protein sequences

Journal:

Year:

2009

File:

PDF, 304 KB

2009

14

Integrative clustering of multiple genomic data types using a joint latent variable model with application to breast and lung cancer subtype analysis

Shen, R., Olshen, A. B., Ladanyi, M.

Journal:

Year:

2009

Language:

english

File:

PDF, 780 KB

english, 2009

15

Metabolite and reaction inference based on enzyme specificities

de Groot, M. J. L., van Berlo, R. J. P., van Winden, W. A., Verheijen, P. J. T., Reinders, M. J. T., de Ridder, D.

Journal:

Year:

2009

Language:

english

File:

PDF, 1.10 MB

english, 2009

16

CellClassifier: supervised learning of cellular phenotypes

Ramo, P., Sacher, R., Snijder, B., Begemann, B., Pelkmans, L.

Journal:

Year:

2009

Language:

english

File:

PDF, 153 KB

english, 2009

17

Learning gene regulatory networks from gene expression measurements using non-parametric molecular kinetics

Aijo, T., Lahdesmaki, H.

Journal:

Year:

2009

Language:

english

File:

PDF, 432 KB

english, 2009

18

Understanding hydrogen-bond patterns in proteins using network motifs

Rahat, O., Alon, U., Levy, Y., Schreiber, G.

Journal:

Year:

2009

Language:

english

File:

PDF, 1.00 MB

english, 2009

19

QuickGO: a web-based tool for Gene Ontology searching

Binns, D., Dimmer, E., Huntley, R., Barrell, D., O'Donovan, C., Apweiler, R.

Journal:

Year:

2009

Language:

english

File:

PDF, 221 KB

english, 2009

20

Phenotypic categorization of genetic skin diseases reveals new relations between phenotypes, genes and pathways

Sadreyev, R. I., Feramisco, J. D., Tsao, H., Grishin, N. V.

Journal:

Year:

2009

Language:

english

File:

PDF, 287 KB

english, 2009

21

A boosting approach to structure learning of graphs with and without prior knowledge

Anjum, S., Doucet, A., Holmes, C. C.

Journal:

Year:

2009

Language:

english

File:

PDF, 631 KB

english, 2009

22

Identification of genes involved in the same pathways using a Hidden Markov Model-based approach

Senf, A., Chen, X.-w.

Journal:

Year:

2009

Language:

english

File:

PDF, 447 KB

english, 2009

23

Improving peptide identification with single-stage mass spectrum peaks

Journal:

Year:

2009

Language:

english

File:

PDF, 327 KB

english, 2009

24

Identifying related journals through log analysis

Lu, Z., Xie, N., Wilbur, W. J.

Journal:

Year:

2009

Language:

english

File:

PDF, 68 KB

english, 2009

25

UniMaP: finding unique mass and peptide signatures in the human proteome

Alexandridou, A., Tsangaris, G. Th., Vougas, K., Nikita, K., Spyrou, G.

Journal:

Year:

2009

Language:

english

File:

PDF, 124 KB

english, 2009

26

Simultaneous inference of biological networks of multiple species from genome-wide data and evolutionary information: a semi-supervised approach

Kashima, H., Yamanishi, Y., Kato, T., Sugiyama, M., Tsuda, K.

Journal:

Year:

2009

Language:

english

File:

PDF, 316 KB

english, 2009

27

PubMed-EX: a web browser extension to enhance PubMed search with text mining features

Tsai, R. T.-H., Dai, H.-J., Lai, P.-T., Huang, C.-H.

Journal:

Year:

2009

Language:

english

File:

PDF, 133 KB

english, 2009

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