Volume 25; Issue 3

Main
Bioinformatics
Volume 25; Issue 3

Bioinformatics

Volume 25; Issue 3

1

Matrix correlations for high-dimensional data: the modified RV-coefficient

Smilde, A. K., Kiers, H. A. L., Bijlsma, S., Rubingh, C. M., van Erk, M. J.

Journal:

Year:

2009

Language:

english

File:

PDF, 121 KB

english, 2009

2

ProtorP: a protein-protein interaction analysis server

Reynolds, C., Damerell, D., Jones, S.

Journal:

Year:

2009

Language:

english

File:

PDF, 93 KB

english, 2009

3

PanCGH: a genotype-calling algorithm for pangenome CGH data

Bayjanov, J. R., Wels, M., Starrenburg, M., van Hylckama Vlieg, J. E. T., Siezen, R. J., Molenaar, D.

Journal:

Year:

2009

Language:

english

File:

PDF, 171 KB

english, 2009

4

Structural profiles of human miRNA families from pairwise clustering

Kaczkowski, B., Torarinsson, E., Reiche, K., Havgaard, J. H., Stadler, P. F., Gorodkin, J.

Journal:

Year:

2009

Language:

english

File:

PDF, 148 KB

english, 2009

5

Reference alignment of SNP microarray signals for copy number analysis of tumors

Pounds, S., Cheng, C., Mullighan, C., Raimondi, S. C., Shurtleff, S., Downing, J. R.

Journal:

Year:

2009

Language:

english

File:

PDF, 862 KB

english, 2009

6

SIMoNe: Statistical Inference for MOdular NEtworks

Chiquet, J., Smith, A., Grasseau, G., Matias, C., Ambroise, C.

Journal:

Year:

2009

Language:

english

File:

PDF, 172 KB

english, 2009

7

Better bioinformatics through usability analysis

Bolchini, D., Finkelstein, A., Perrone, V., Nagl, S.

Journal:

Year:

2009

Language:

english

File:

PDF, 193 KB

english, 2009

8

Precision and recall estimates for two-hybrid screens

Huang, H., Bader, J. S.

Journal:

Year:

2009

Language:

english

File:

PDF, 150 KB

english, 2009

9

Sequence progressive alignment, a framework for practical large-scale probabilistic consistency alignment

Paten, B., Herrero, J., Beal, K., Birney, E.

Journal:

Year:

2009

Language:

english

File:

PDF, 197 KB

english, 2009

10

arrayQualityMetrics--a bioconductor package for quality assessment of microarray data

Kauffmann, A., Gentleman, R., Huber, W.

Journal:

Year:

2009

Language:

english

File:

PDF, 470 KB

english, 2009

11

Identification of microRNA regulatory modules in Arabidopsis via a probabilistic graphical model

Joung, J.-G., Fei, Z.

Journal:

Year:

2009

Language:

english

File:

PDF, 171 KB

english, 2009

12

A predictive model for identifying mini-regulatory modules in the mouse genome

Yaragatti, M., Sandler, T., Ungar, L.

Journal:

Year:

2009

Language:

english

File:

PDF, 181 KB

english, 2009

13

Evaluating contributions of natural language parsers to protein-protein interaction extraction

Miyao, Y., Sagae, K., Saetre, R., Matsuzaki, T., Tsujii, J.

Journal:

Year:

2009

Language:

english

File:

PDF, 312 KB

english, 2009

14

Estimation of errors introduced by confocal imaging into the data on segmentation gene expression in Drosophila

Myasnikova, E., Surkova, S., Panok, L., Samsonova, M., Reinitz, J.

Journal:

Year:

2009

Language:

english

File:

PDF, 684 KB

english, 2009

15

Computationally feasible estimation of haplotype frequencies from pooled DNA with and without Hardy-Weinberg equilibrium

Kuk, A. Y. C., Zhang, H., Yang, Y.

Journal:

Year:

2009

Language:

english

File:

PDF, 133 KB

english, 2009

16

A genetic programming-based approach to the classification of multiclass microarray datasets

Liu, K.-H., Xu, C.-G.

Journal:

Year:

2009

Language:

english

File:

PDF, 195 KB

english, 2009

17

Gene expression trends and protein features effectively complement each other in gene function prediction

Wabnik, K., Hvidsten, T. R., Kedzierska, A., Van Leene, J., De Jaeger, G., Beemster, G. T. S., Komorowski, J., Kuiper, M. T. R.

Journal:

Year:

2009

Language:

english

File:

PDF, 356 KB

english, 2009

18

Glycan family analysis for deducing N-glycan topology from single MS

Goldberg, D., Bern, M., North, S. J., Haslam, S. M., Dell, A.

Journal:

Year:

2009

Language:

english

File:

PDF, 197 KB

english, 2009

19

rHVDM: an R package to predict the activity and targets of a transcription factor

Barenco, M., Papouli, E., Shah, S., Brewer, D., Miller, C.J., Hubank, M.

Journal:

Year:

2009

Language:

english

File:

PDF, 84 KB

english, 2009

20

New evaluation measures for multifactor dimensionality reduction classifiers in gene-gene interaction analysis

Namkung, J., Kim, K., Yi, S., Chung, W., Kwon, M.-S., Park, T.

Journal:

Year:

2009

Language:

english

File:

PDF, 120 KB

english, 2009

21

Simulation of crosstalk between small GTPase RhoA and EGFR-ERK signaling pathway via MEKK1

Li, H., Ung, C. Y., Ma, X. H., Li, B. W., Low, B. C., Cao, Z. W., Chen, Y. Z.

Journal:

Year:

2009

Language:

english

File:

PDF, 340 KB

english, 2009

22

All hits all the time: parameter-free calculation of spaced seed sensitivity

Mak, D. Y.F., Benson, G.

Journal:

Year:

2009

Language:

english

File:

PDF, 236 KB

english, 2009