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Volume 27; Issue 11
Main
Bioinformatics
Volume 27; Issue 11
Bioinformatics
Volume 27; Issue 11
1
ProDy: Protein Dynamics Inferred from Theory and Experiments
Bakan, A.
,
Meireles, L. M.
,
Bahar, I.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 259 KB
Your tags:
english, 2011
2
A robust and accurate binning algorithm for metagenomic sequences with arbitrary species abundance ratio
Leung, H. C. M.
,
Yiu, S. M.
,
Yang, B.
,
Peng, Y.
,
Wang, Y.
,
Liu, Z.
,
Chen, J.
,
Qin, J.
,
Li, R.
,
Chin, F. Y. L.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 349 KB
Your tags:
english, 2011
3
BACOM: in silico detection of genomic deletion types and correction of normal cell contamination in copy number data
Yu, G.
,
Zhang, B.
,
Bova, G. S.
,
Xu, J.
,
Shih, I.-M.
,
Wang, Y.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 720 KB
Your tags:
english, 2011
4
Alignment-free detection of local similarity among viral and bacterial genomes
Domazet-Loso, M.
,
Haubold, B.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 481 KB
Your tags:
english, 2011
5
Independent surrogate variable analysis to deconvolve confounding factors in large-scale microarray profiling studies
Teschendorff, A. E.
,
Zhuang, J.
,
Widschwendter, M.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 349 KB
Your tags:
english, 2011
6
MRSD: a web server for Metabolic Route Search and Design
Xia, D.
,
Zheng, H.
,
Liu, Z.
,
Li, G.
,
Li, J.
,
Hong, J.
,
Zhao, K.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 138 KB
Your tags:
english, 2011
7
CMView: Interactive contact map visualization and analysis
Vehlow, C.
,
Stehr, H.
,
Winkelmann, M.
,
Duarte, J. M.
,
Petzold, L.
,
Dinse, J.
,
Lappe, M.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 141 KB
Your tags:
english, 2011
8
Reasoning with bio-ontologies: using relational closure rules to enable practical querying
Blonde, W.
,
Mironov, V.
,
Venkatesan, A.
,
Antezana, E.
,
De Baets, B.
,
Kuiper, M.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 304 KB
Your tags:
english, 2011
9
Comprehensive and relaxed search for oligonucleotide signatures in hierarchically clustered sequence datasets
Bader, K. C.
,
Grothoff, C.
,
Meier, H.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 422 KB
Your tags:
english, 2011
10
Systems biology model repository for macrophage pathway simulation
Nagasaki, M.
,
Saito, A.
,
Fujita, A.
,
Tremmel, G.
,
Ueno, K.
,
Ikeda, E.
,
Jeong, E.
,
Miyano, S.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 322 KB
Your tags:
english, 2011
11
Proteins without 3D structure: definition, detection and beyond
Orosz, F.
,
Ovadi, J.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 112 KB
Your tags:
english, 2011
12
Comrad: detection of expressed rearrangements by integrated analysis of RNA-Seq and low coverage genome sequence data
McPherson, A.
,
Wu, C.
,
Hajirasouliha, I.
,
Hormozdiari, F.
,
Hach, F.
,
Lapuk, A.
,
Volik, S.
,
Shah, S.
,
Collins, C.
,
Sahinalp, S. C.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 385 KB
Your tags:
english, 2011
13
Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications
Krueger, F.
,
Andrews, S. R.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 241 KB
Your tags:
english, 2011
14
EpiGPU: exhaustive pairwise epistasis scans parallelized on consumer level graphics cards
Hemani, G.
,
Theocharidis, A.
,
Wei, W.
,
Haley, C.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 133 KB
Your tags:
english, 2011
15
A novel network-based method for measuring the functional relationship between gene sets
Wang, Q.
,
Sun, J.
,
Zhou, M.
,
Yang, H.
,
Li, Y.
,
Li, X.
,
Lv, S.
,
Li, X.
,
Li, Y.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 380 KB
Your tags:
english, 2011
16
CyClus3D: a Cytoscape plugin for clustering network motifs in integrated networks
Audenaert, P.
,
Van Parys, T.
,
Brondel, F.
,
Pickavet, M.
,
Demeester, P.
,
Van de Peer, Y.
,
Michoel, T.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 155 KB
Your tags:
english, 2011
17
Inferring Boolean network structure via correlation
Maucher, M.
,
Kracher, B.
,
Kuhl, M.
,
Kestler, H. A.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 301 KB
Your tags:
english, 2011
18
Normalizing bead-based microRNA expression data: a measurement error model-based approach
Wang, B.
,
Wang, X.-F.
,
Xi, Y.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 523 KB
Your tags:
english, 2011
19
Multi-platform segmentation for joint detection of copy number variants
Teo, S. M.
,
Pawitan, Y.
,
Kumar, V.
,
Thalamuthu, A.
,
Seielstad, M.
,
Chia, K. S.
,
Salim, A.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 320 KB
Your tags:
english, 2011
20
VIZ-GRAIL: visualizing functional connections across disease loci
Raychaudhuri, S.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 277 KB
Your tags:
english, 2011
21
DIME: R-package for identifying differential ChIP-seq based on an ensemble of mixture models
Taslim, C.
,
Huang, T.
,
Lin, S.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 149 KB
Your tags:
english, 2011
22
Efficient algorithms for tandem copy number variation reconstruction in repeat-rich regions
He, D.
,
Hormozdiari, F.
,
Furlotte, N.
,
Eskin, E.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 247 KB
Your tags:
english, 2011
23
datPAV--an online processing, analysis and visualization tool for exploratory investigation of experimental data
Biswas, A.
,
Rao, R.
,
Umashankar, S.
,
Mynampati, K. C.
,
Reuben, S.
,
Parab, G.
,
Swarup, S.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 172 KB
Your tags:
english, 2011
24
Reliability-Oriented bioinformatic networks visualization
Aladag, A. E.
,
Erten, C.
,
Sozdinler, M.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 181 KB
Your tags:
english, 2011
25
Correcting errors in short reads by multiple alignments
Salmela, L.
,
Schroder, J.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 316 KB
Your tags:
english, 2011
26
Prediction of metabolic reactions based on atomic and molecular properties of small-molecule compounds
Mu, F.
,
Unkefer, C. J.
,
Unkefer, P. J.
,
Hlavacek, W. S.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 420 KB
Your tags:
english, 2011
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