Volume 27; Issue 12

Bioinformatics

Volume 27; Issue 12
3

DREME: motif discovery in transcription factor ChIP-seq data

Bailey, T. L.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 434 KB
english, 2011
4

Pathway analysis of high-throughput biological data within a Bayesian network framework

Isci, S., Ozturk, C., Jones, J., Otu, H. H.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 566 KB
english, 2011
6

Cobweb: a Java applet for network exploration and visualisation

von Eichborn, J., Bourne, P. E., Preissner, R.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 328 KB
english, 2011
8

A graphical interface for the FoldX forcefield

Van Durme, J., Delgado, J., Stricher, F., Serrano, L., Schymkowitz, J., Rousseau, F.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 150 KB
english, 2011
9

Rgtsp: a generalized top scoring pairs package for class prediction

Popovici, V., Budinska, E., Delorenzi, M.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 107 KB
english, 2011
10

Molecular signatures database (MSigDB) 3.0

Liberzon, A., Subramanian, A., Pinchback, R., Thorvaldsdottir, H., Tamayo, P., Mesirov, J. P.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 217 KB
english, 2011
11

OTUbase: an R infrastructure package for operational taxonomic unit data

Beck, D., Settles, M., Foster, J. A.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 128 KB
english, 2011
13

Mcheza: a workbench to detect selection using dominant markers

Antao, T., Beaumont, M. A.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 64 KB
english, 2011
14

Mixture models for analysis of the taxonomic composition of metagenomes

Meinicke, P., Asshauer, K. P., Lingner, T.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 258 KB
english, 2011
15

KalignP: Improved multiple sequence alignments using position specific gap penalties in Kalign2

Shu, N., Elofsson, A.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 69 KB
english, 2011
17

MEME-ChIP: motif analysis of large DNA datasets

Machanick, P., Bailey, T. L.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 212 KB
english, 2011
19

Boulder ALignment Editor (ALE): a web-based RNA alignment tool

Stombaugh, J., Widmann, J., McDonald, D., Knight, R.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 153 KB
english, 2011
20

Figure summarizer browser extensions for PubMed Central

Agarwal, S., Yu, H.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 200 KB
english, 2011
22

FR-HIT, a very fast program to recruit metagenomic reads to homologous reference genomes

Niu, B., Zhu, Z., Fu, L., Wu, S., Li, W.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 161 KB
english, 2011
25

Multiple-rule bias in the comparison of classification rules

Yousefi, M. R., Hua, J., Dougherty, E. R.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 1.67 MB
english, 2011
26

RuleBender: a visual interface for rule-based modeling

Xu, W., Smith, A. M., Faeder, J. R., Marai, G. E.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 184 KB
english, 2011
28

Signaling gateway molecule pages--a data model perspective

Dinasarapu, A. R., Saunders, B., Ozerlat, I., Azam, K., Subramaniam, S.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 160 KB
english, 2011
31

FusionHunter: identifying fusion transcripts in cancer using paired-end RNA-seq

Li, Y., Chien, J., Smith, D. I., Ma, J.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 289 KB
english, 2011