Volume 27; Issue 17

Bioinformatics

Volume 27; Issue 17
1

Identification of novel transcripts in annotated genomes using RNA-Seq

Roberts, A., Pimentel, H., Trapnell, C., Pachter, L.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 245 KB
english, 2011
2

A Grid-enabled web portal for NMR structure refinement with AMBER

Bertini, I., Case, D. A., Ferella, L., Giachetti, A., Rosato, A.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 410 KB
english, 2011
4

APCluster: an R package for affinity propagation clustering

Bodenhofer, U., Kothmeier, A., Hochreiter, S.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 496 KB
english, 2011
7

Making whole genome multiple alignments usable for biologists

Blankenberg, D., Taylor, J., Nekrutenko, A.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 68 KB
english, 2011
10

PREDA: an R-package to identify regional variations in genomic data

Ferrari, F., Solari, A., Battaglia, C., Bicciato, S.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 205 KB
english, 2011
11

MethylCoder: software pipeline for bisulfite-treated sequences

Pedersen, B., Hsieh, T.-F., Ibarra, C., Fischer, R. L.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 61 KB
english, 2011
12

A Lasso regression model for the construction of microRNA-target regulatory networks

Lu, Y., Zhou, Y., Qu, W., Deng, M., Zhang, C.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 921 KB
english, 2011
13

Simulating systems genetics data with SysGenSIM

Pinna, A., Soranzo, N., Hoeschele, I., de la Fuente, A.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 80 KB
english, 2011
15

BRISK--research-oriented storage kit for biology-related data

Tan, A., Tripp, B., Daley, D.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 154 KB
english, 2011
16

Tissue-specific prediction of directly regulated genes

McLeay, R. C., Leat, C. J., Bailey, T. L.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 270 KB
english, 2011
20

DivBayes and SubT: exploring species diversification using Bayesian statistics

Ryberg, M., Nilsson, R. H., Matheny, P. B.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 115 KB
english, 2011
23

CSO validator: improving manual curation workflow for biological pathways

Jeong, E., Nagasaki, M., Ikeda, E., Sekiya, Y., Saito, A., Miyano, S.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 159 KB
english, 2011
25

Sufficient statistics and expectation maximization algorithms in phylogenetic tree models

Kiryu, H.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 545 KB
english, 2011
26

Simple high-throughput annotation pipeline (SHAP)

DeMaere, M. Z., Lauro, F. M., Thomas, T., Yau, S., Cavicchioli, R.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 182 KB
english, 2011
27

spacodiR: structuring of phylogenetic diversity in ecological communities

Eastman, J. M., Paine, C. E. T., Hardy, O. J.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 118 KB
english, 2011
30

IRiS: Construction of ARG networks at genomic scales

Javed, A., Pybus, M., Mele, M., Utro, F., Bertranpetit, J., Calafell, F., Parida, L.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 326 KB
english, 2011