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Volume 27; Issue 17
Main
Bioinformatics
Volume 27; Issue 17
Bioinformatics
Volume 27; Issue 17
1
Identification of novel transcripts in annotated genomes using RNA-Seq
Roberts, A.
,
Pimentel, H.
,
Trapnell, C.
,
Pachter, L.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 245 KB
Your tags:
english, 2011
2
A Grid-enabled web portal for NMR structure refinement with AMBER
Bertini, I.
,
Case, D. A.
,
Ferella, L.
,
Giachetti, A.
,
Rosato, A.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 410 KB
Your tags:
english, 2011
3
DECOD: fast and accurate discriminative DNA motif finding
Huggins, P.
,
Zhong, S.
,
Shiff, I.
,
Beckerman, R.
,
Laptenko, O.
,
Prives, C.
,
Schulz, M. H.
,
Simon, I.
,
Bar-Joseph, Z.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 510 KB
Your tags:
english, 2011
4
APCluster: an R package for affinity propagation clustering
Bodenhofer, U.
,
Kothmeier, A.
,
Hochreiter, S.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 496 KB
Your tags:
english, 2011
5
Elemental composition determination based on MSn
Rojas-Cherto, M.
,
Kasper, P. T.
,
Willighagen, E. L.
,
Vreeken, R. J.
,
Hankemeier, T.
,
Reijmers, T. H.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 440 KB
Your tags:
english, 2011
6
Computational reconstruction of primordial prototypes of elementary functional loops in modern proteins
Goncearenco, A.
,
Berezovsky, I. N.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 911 KB
Your tags:
english, 2011
7
Making whole genome multiple alignments usable for biologists
Blankenberg, D.
,
Taylor, J.
,
Nekrutenko, A.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 68 KB
Your tags:
english, 2011
8
StochKit2: software for discrete stochastic simulation of biochemical systems with events
Sanft, K. R.
,
Wu, S.
,
Roh, M.
,
Fu, J.
,
Lim, R. K.
,
Petzold, L. R.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 142 KB
Your tags:
english, 2011
9
MetATT: a web-based metabolomics tool for analyzing time-series and two-factor datasets
Xia, J.
,
Sinelnikov, I. V.
,
Wishart, D. S.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 174 KB
Your tags:
english, 2011
10
PREDA: an R-package to identify regional variations in genomic data
Ferrari, F.
,
Solari, A.
,
Battaglia, C.
,
Bicciato, S.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 205 KB
Your tags:
english, 2011
11
MethylCoder: software pipeline for bisulfite-treated sequences
Pedersen, B.
,
Hsieh, T.-F.
,
Ibarra, C.
,
Fischer, R. L.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 61 KB
Your tags:
english, 2011
12
A Lasso regression model for the construction of microRNA-target regulatory networks
Lu, Y.
,
Zhou, Y.
,
Qu, W.
,
Deng, M.
,
Zhang, C.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 921 KB
Your tags:
english, 2011
13
Simulating systems genetics data with SysGenSIM
Pinna, A.
,
Soranzo, N.
,
Hoeschele, I.
,
de la Fuente, A.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 80 KB
Your tags:
english, 2011
14
RxnFinder: biochemical reaction search engines using molecular structures, molecular fragments and reaction similarity
Hu, Q.-N.
,
Deng, Z.
,
Hu, H.
,
Cao, D.-S.
,
Liang, Y.-Z.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 448 KB
Your tags:
english, 2011
15
BRISK--research-oriented storage kit for biology-related data
Tan, A.
,
Tripp, B.
,
Daley, D.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 154 KB
Your tags:
english, 2011
16
Tissue-specific prediction of directly regulated genes
McLeay, R. C.
,
Leat, C. J.
,
Bailey, T. L.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 270 KB
Your tags:
english, 2011
17
A rank-based statistical test for measuring synergistic effects between two gene sets
Shiraishi, Y.
,
Okada-Hatakeyama, M.
,
Miyano, S.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 512 KB
Your tags:
english, 2011
18
ModeRNA server: an online tool for modeling RNA 3D structures
Rother, M.
,
Milanowska, K.
,
Puton, T.
,
Jeleniewicz, J.
,
Rother, K.
,
Bujnicki, J. M.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 280 KB
Your tags:
english, 2011
19
CytoscapeRPC: a plugin to create, modify and query Cytoscape networks from scripting languages
Bot, J. J.
,
Reinders, M. J. T.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 311 KB
Your tags:
english, 2011
20
DivBayes and SubT: exploring species diversification using Bayesian statistics
Ryberg, M.
,
Nilsson, R. H.
,
Matheny, P. B.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 115 KB
Your tags:
english, 2011
21
Tissue-specific subnetworks and characteristics of publicly available human protein interaction databases
Lopes, T. J. S.
,
Schaefer, M.
,
Shoemaker, J.
,
Matsuoka, Y.
,
Fontaine, J.-F.
,
Neumann, G.
,
Andrade-Navarro, M. A.
,
Kawaoka, Y.
,
Kitano, H.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 393 KB
Your tags:
english, 2011
22
Simple Neurite Tracer: open source software for reconstruction, visualization and analysis of neuronal processes
Longair, M. H.
,
Baker, D. A.
,
Armstrong, J. D.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 144 KB
Your tags:
english, 2011
23
CSO validator: improving manual curation workflow for biological pathways
Jeong, E.
,
Nagasaki, M.
,
Ikeda, E.
,
Sekiya, Y.
,
Saito, A.
,
Miyano, S.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 159 KB
Your tags:
english, 2011
24
NASP: a parallel program for identifying evolutionarily conserved nucleic acid secondary structures from nucleotide sequence alignments
Semegni, J. Y.
,
Wamalwa, M.
,
Gaujoux, R.
,
Harkins, G. W.
,
Gray, A.
,
Martin, D. P.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 67 KB
Your tags:
english, 2011
25
Sufficient statistics and expectation maximization algorithms in phylogenetic tree models
Kiryu, H.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 545 KB
Your tags:
english, 2011
26
Simple high-throughput annotation pipeline (SHAP)
DeMaere, M. Z.
,
Lauro, F. M.
,
Thomas, T.
,
Yau, S.
,
Cavicchioli, R.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 182 KB
Your tags:
english, 2011
27
spacodiR: structuring of phylogenetic diversity in ecological communities
Eastman, J. M.
,
Paine, C. E. T.
,
Hardy, O. J.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 118 KB
Your tags:
english, 2011
28
Annotation concept synthesis and enrichment analysis: a logic-based approach to the interpretation of high-throughput experiments
Jiline, M.
,
Matwin, S.
,
Turcotte, M.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 483 KB
Your tags:
english, 2011
29
A novel signal processing approach for the detection of copy number variations in the human genome
Stamoulis, C.
,
Betensky, R. A.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 1.24 MB
Your tags:
english, 2011
30
IRiS: Construction of ARG networks at genomic scales
Javed, A.
,
Pybus, M.
,
Mele, M.
,
Utro, F.
,
Bertranpetit, J.
,
Calafell, F.
,
Parida, L.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 326 KB
Your tags:
english, 2011
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