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Volume 27; Issue 3
Main
Bioinformatics
Volume 27; Issue 3
Bioinformatics
Volume 27; Issue 3
1
Cytoscape 2.8: new features for data integration and network visualization
Smoot, M. E.
,
Ono, K.
,
Ruscheinski, J.
,
Wang, P.-L.
,
Ideker, T.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 160 KB
Your tags:
english, 2011
2
MSPocket: an orientation-independent algorithm for the detection of ligand binding pockets
Zhu, H.
,
Pisabarro, M. T.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 518 KB
Your tags:
english, 2011
3
Toward the estimation of the absolute quality of individual protein structure models
Benkert, P.
,
Biasini, M.
,
Schwede, T.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 496 KB
Your tags:
english, 2011
4
New approach for segmentation and quantification of two-dimensional gel electrophoresis images
dos Anjos, A.
,
Moller, A. L. B.
,
Ersboll, B. K.
,
Finnie, C.
,
Shahbazkia, H. R.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 459 KB
Your tags:
english, 2011
5
Principal network analysis: identification of subnetworks representing major dynamics using gene expression data
Kim, Y.
,
Kim, T.-K.
,
Kim, Y.
,
Yoo, J.
,
You, S.
,
Lee, I.
,
Carlson, G.
,
Hood, L.
,
Choi, S.
,
Hwang, D.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 1.05 MB
Your tags:
english, 2011
6
Genotype calling and mapping of multisite variants using an Atlantic salmon iSelect SNP array
Gidskehaug, L.
,
Kent, M.
,
Hayes, B. J.
,
Lien, S.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 556 KB
Your tags:
english, 2011
7
SurreyFBA: a command line tool and graphics user interface for constraint-based modeling of genome-scale metabolic reaction networks
Gevorgyan, A.
,
Bushell, M. E.
,
Avignone-Rossa, C.
,
Kierzek, A. M.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 212 KB
Your tags:
english, 2011
8
Improving the quality of protein similarity network clustering algorithms using the network edge weight distribution
Apeltsin, L.
,
Morris, J. H.
,
Babbitt, P. C.
,
Ferrin, T. E.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 694 KB
Your tags:
english, 2011
9
A regression framework incorporating quantitative and negative interaction data improves quantitative prediction of PDZ domain-peptide interaction from primary sequence
Shao, X.
,
Tan, C. S. H.
,
Voss, C.
,
Li, S. S. C.
,
Deng, N.
,
Bader, G. D.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 318 KB
Your tags:
english, 2011
10
Open source platform for the execution and analysis of mechanical refolding experiments
Aioanei, D.
,
Brucale, M.
,
Samori, B.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 138 KB
Your tags:
english, 2011
11
Toward an automatic method for extracting cancer- and other disease-related point mutations from the biomedical literature
Doughty, E.
,
Kertesz-Farkas, A.
,
Bodenreider, O.
,
Thompson, G.
,
Adadey, A.
,
Peterson, T.
,
Kann, M. G.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 216 KB
Your tags:
english, 2011
12
WIST: toolkit for rapid, customized LIMS development
Huang, Y. W.
,
Arkin, A. P.
,
Chandonia, J.-M.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 252 KB
Your tags:
english, 2011
13
MASISH: a database for gene expression in maize seeds
Miquel, M.
,
Lopez-Ribera, I.
,
Ramia, M.
,
Casillas, S.
,
Barbadilla, A.
,
Vicient, C. M.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 120 KB
Your tags:
english, 2011
14
Bayesian ensemble methods for survival prediction in gene expression data
Bonato, V.
,
Baladandayuthapani, V.
,
Broom, B. M.
,
Sulman, E. P.
,
Aldape, K. D.
,
Do, K.-A.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 322 KB
Your tags:
english, 2011
15
W-ChIPeaks: a comprehensive web application tool for processing ChIP-chip and ChIP-seq data
Lan, X.
,
Bonneville, R.
,
Apostolos, J.
,
Wu, W.
,
Jin, V. X.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 333 KB
Your tags:
english, 2011
16
HiTEC: accurate error correction in high-throughput sequencing data
Ilie, L.
,
Fazayeli, F.
,
Ilie, S.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 362 KB
Your tags:
english, 2011
17
On safari to Random Jungle: a fast implementation of Random Forests for high-dimensional data
Schwarz, D. F.
,
Konig, I. R.
,
Ziegler, A.
Journal:
Bioinformatics
Year:
2011
File:
PDF, 41 KB
Your tags:
2011
18
Improved predictions by Pcons.net using multiple templates
Larsson, P.
,
Skwark, M. J.
,
Wallner, B.
,
Elofsson, A.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 319 KB
Your tags:
english, 2011
19
When the Web meets the cell: using personalized PageRank for analyzing protein interaction networks
Ivan, G.
,
Grolmusz, V.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 476 KB
Your tags:
english, 2011
20
'Non-destructive' biocomputing security system based on gas-controlled biofuel cell and potentially used for intelligent medical diagnostics
Zhou, M.
,
Zheng, X.
,
Wang, J.
,
Dong, S.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 312 KB
Your tags:
english, 2011
21
Mugsy: fast multiple alignment of closely related whole genomes
Angiuoli, S. V.
,
Salzberg, S. L.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 347 KB
Your tags:
english, 2011
22
maxAlike: maximum likelihood-based sequence reconstruction with application to improved primer design for unknown sequences
Menzel, P.
,
Stadler, P. F.
,
Gorodkin, J.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 559 KB
Your tags:
english, 2011
23
Improving evolutionary models of protein interaction networks
Gibson, T. A.
,
Goldberg, D. S.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 250 KB
Your tags:
english, 2011
24
Rseg--an R package to optimize segmentation of SNP array data
Lamy, P.
,
Wiuf, C.
,
Orntoft, T. F.
,
Andersen, C. L.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 356 KB
Your tags:
english, 2011
25
Algorithms for sorting unsigned linear genomes by the DCJ operations
Jiang, H.
,
Zhu, B.
,
Zhu, D.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 288 KB
Your tags:
english, 2011
26
MU2A--reconciling the genome and transcriptome to determine the effects of base substitutions
Garla, V.
,
Kong, Y.
,
Szpakowski, S.
,
Krauthammer, M.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 203 KB
Your tags:
english, 2011
27
ISCB Public Policy Statement on Open Access to Scientific and Technical Research Literature
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 75 KB
Your tags:
english, 2011
28
ABMapper: a suffix array-based tool for multi-location searching and splice-junction mapping
Lou, S.-K.
,
Ni, B.
,
Lo, L.-Y.
,
Tsui, S. K.-W.
,
Chan, T.-F.
,
Leung, K.-S.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 166 KB
Your tags:
english, 2011
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