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Open LITERA Point
Volume 27; Issue 8
Main
Bioinformatics
Volume 27; Issue 8
Bioinformatics
Volume 27; Issue 8
1
Automated workflows for accurate mass-based putative metabolite identification in LC/MS-derived metabolomic datasets
Brown, M.
,
Wedge, D. C.
,
Goodacre, R.
,
Kell, D. B.
,
Baker, P. N.
,
Kenny, L. C.
,
Mamas, M. A.
,
Neyses, L.
,
Dunn, W. B.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 99 KB
Your tags:
english, 2011
2
Improved structure, function and compatibility for CellProfiler: modular high-throughput image analysis software
Kamentsky, L.
,
Jones, T. R.
,
Fraser, A.
,
Bray, M.-A.
,
Logan, D. J.
,
Madden, K. L.
,
Ljosa, V.
,
Rueden, C.
,
Eliceiri, K. W.
,
Carpenter, A. E.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 121 KB
Your tags:
english, 2011
3
Sensitive gene fusion detection using ambiguously mapping RNA-Seq read pairs
Kinsella, M.
,
Harismendy, O.
,
Nakano, M.
,
Frazer, K. A.
,
Bafna, V.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 369 KB
Your tags:
english, 2011
4
Assigning spectrum-specific P-values to protein identifications by mass spectrometry
Spirin, V.
,
Shpunt, A.
,
Seebacher, J.
,
Gentzel, M.
,
Shevchenko, A.
,
Gygi, S.
,
Sunyaev, S.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 370 KB
Your tags:
english, 2011
5
Human variation database: an open-source database template for genomic discovery
Fejes, A. P.
,
Khodabakhshi, A. H.
,
Birol, I.
,
Jones, S. J. M.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 61 KB
Your tags:
english, 2011
6
ACT: aggregation and correlation toolbox for analyses of genome tracks
Jee, J.
,
Rozowsky, J.
,
Yip, K. Y.
,
Lochovsky, L.
,
Bjornson, R.
,
Zhong, G.
,
Zhang, Z.
,
Fu, Y.
,
Wang, J.
,
Weng, Z.
,
Gerstein, M.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 160 KB
Your tags:
english, 2011
7
Proteomics to go: Proteomatic enables the user-friendly creation of versatile MS/MS data evaluation workflows
Specht, M.
,
Kuhlgert, S.
,
Fufezan, C.
,
Hippler, M.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 165 KB
Your tags:
english, 2011
8
Topology and prediction of RNA pseudoknots
Reidys, C. M.
,
Huang, F. W. D.
,
Andersen, J. E.
,
Penner, R. C.
,
Stadler, P. F.
,
Nebel, M. E.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 884 KB
Your tags:
english, 2011
9
eGOB: eukaryotic Gene Order Browser
Lopez, M. D.
,
Samuelsson, T.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 227 KB
Your tags:
english, 2011
10
FNV: light-weight flash-based network and pathway viewer
Dannenfelser, R.
,
Lachmann, A.
,
Szenk, M.
,
Ma'ayan, A.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 111 KB
Your tags:
english, 2011
11
Gene List significance at-a-glance with GeneValorization
Brancotte, B.
,
Biton, A.
,
Bernard-Pierrot, I.
,
Radvanyi, F.
,
Reyal, F.
,
Cohen-Boulakia, S.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 229 KB
Your tags:
english, 2011
12
ProtTest 3: fast selection of best-fit models of protein evolution
Darriba, D.
,
Taboada, G. L.
,
Doallo, R.
,
Posada, D.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 258 KB
Your tags:
english, 2011
13
Condensing biomedical journal texts through paragraph ranking
Chiang, J.-H.
,
Liu, H.-H.
,
Huang, Y.-T.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 386 KB
Your tags:
english, 2011
14
eCEO: an efficient Cloud Epistasis cOmputing model in genome-wide association study
Wang, Z.
,
Wang, Y.
,
Tan, K.-L.
,
Wong, L.
,
Agrawal, D.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 673 KB
Your tags:
english, 2011
15
A comprehensive protein-centric ID mapping service for molecular data integration
Huang, H.
,
McGarvey, P. B.
,
Suzek, B. E.
,
Mazumder, R.
,
Zhang, J.
,
Chen, Y.
,
Wu, C. H.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 200 KB
Your tags:
english, 2011
16
All-atom knowledge-based potential for RNA structure prediction and assessment
Capriotti, E.
,
Norambuena, T.
,
Marti-Renom, M. A.
,
Melo, F.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 288 KB
Your tags:
english, 2011
17
STOCHSIMGPU: parallel stochastic simulation for the Systems Biology Toolbox 2 for MATLAB
Klingbeil, G.
,
Erban, R.
,
Giles, M.
,
Maini, P. K.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 142 KB
Your tags:
english, 2011
18
Automatically identifying and annotating mouse embryo gene expression patterns
Han, L.
,
van Hemert, J. I.
,
Baldock, R. A.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 472 KB
Your tags:
english, 2011
19
SiGN-SSM: open source parallel software for estimating gene networks with state space models
Tamada, Y.
,
Yamaguchi, R.
,
Imoto, S.
,
Hirose, O.
,
Yoshida, R.
,
Nagasaki, M.
,
Miyano, S.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 219 KB
Your tags:
english, 2011
20
BiC: a web server for calculating bimodality of coexpression between gene and protein networks
Linderman, G. C.
,
Patel, V. N.
,
Chance, M. R.
,
Bebek, G.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 212 KB
Your tags:
english, 2011
21
Comments on 'Bayesian variable selection for disease classification using gene expression data'
Baragatti, M. C.
,
Pommeret, D.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 57 KB
Your tags:
english, 2011
22
A high-throughput processing service for retention time alignment of complex proteomics and metabolomics LC-MS data
Ahmad, I.
,
Suits, F.
,
Hoekman, B.
,
Swertz, M. A.
,
Byelas, H.
,
Dijkstra, M.
,
Hooft, R.
,
Katsubo, D.
,
van Breukelen, B.
,
Bischoff, R.
,
Horvatovich, P.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 346 KB
Your tags:
english, 2011
23
Interactive, multiscale navigation of large and complicated biological networks
Praneenararat, T.
,
Takagi, T.
,
Iwasaki, W.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 587 KB
Your tags:
english, 2011
24
The effects of feedback loops on disease comorbidity in human signaling networks
Le, D.-H.
,
Kwon, Y.-K.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 599 KB
Your tags:
english, 2011
25
PrimerProspector: de novo design and taxonomic analysis of barcoded polymerase chain reaction primers
Walters, W. A.
,
Caporaso, J. G.
,
Lauber, C. L.
,
Berg-Lyons, D.
,
Fierer, N.
,
Knight, R.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 562 KB
Your tags:
english, 2011
26
R453Plus1Toolbox: an R/Bioconductor package for analyzing Roche 454 Sequencing data
Klein, H.-U.
,
Bartenhagen, C.
,
Kohlmann, A.
,
Grossmann, V.
,
Ruckert, C.
,
Haferlach, T.
,
Dugas, M.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 141 KB
Your tags:
english, 2011
27
Improving SNP discovery by base alignment quality
Li, H.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 136 KB
Your tags:
english, 2011
28
Topological entropy of DNA sequences
Koslicki, D.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 260 KB
Your tags:
english, 2011
29
MPID-T2: a database for sequence-structure-function analyses of pMHC and TR/pMHC structures
Khan, J. M.
,
Cheruku, H. R.
,
Tong, J. C.
,
Ranganathan, S.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 67 KB
Your tags:
english, 2011
30
Defining an informativeness metric for clustering gene expression data
Mar, J. C.
,
Wells, C. A.
,
Quackenbush, J.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 366 KB
Your tags:
english, 2011
31
AGRA: analysis of gene ranking algorithms
Kocbek, S.
,
Saetre, R.
,
Stiglic, G.
,
Kim, J.-D.
,
Pernek, I.
,
Tsuruoka, Y.
,
Kokol, P.
,
Ananiadou, S.
,
Tsujii, J.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 128 KB
Your tags:
english, 2011
32
SurvJamda: an R package to predict patients' survival and risk assessment using joint analysis of microarray gene expression data
Yasrebi, H.
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 61 KB
Your tags:
english, 2011
33
Performance assessment of copy number microarray platforms using a spike-in experiment
Halper-Stromberg, E.
,
Frelin, L.
,
Ruczinski, I.
,
Scharpf, R.
,
Jie, C.
,
Carvalho, B.
,
Hao, H.
,
Hetrick, K.
,
Jedlicka, A.
,
Dziedzic, A.
,
Doheny, K.
,
Scott, A. F.
,
Baylin, S.
,
Pevsner, J.
,
Spencer, F.
,
I
Journal:
Bioinformatics
Year:
2011
Language:
english
File:
PDF, 2.16 MB
Your tags:
english, 2011
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