Volume 28; Issue 13

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Bioinformatics
Volume 28; Issue 13

Bioinformatics

Volume 28; Issue 13

1

Statistical analysis of glycosylation profiles to compare tissue type and inflammatory disease state

Hayes, C. A., Nemes, S., Karlsson, N. G.

Journal:

Year:

2012

Language:

english

File:

PDF, 693 KB

english, 2012

2

Fast and sensitive mapping of bisulfite-treated sequencing data

Otto, C., Stadler, P. F., Hoffmann, S.

Journal:

Year:

2012

Language:

english

File:

PDF, 312 KB

english, 2012

3

OnlineCall: fast online parameter estimation and base calling for illumina's next-generation sequencing

Das, S., Vikalo, H.

Journal:

Year:

2012

Language:

english

File:

PDF, 314 KB

english, 2012

4

GEMSiRV: a software platform for GEnome-scale metabolic model simulation, reconstruction and visualization

Liao, Y.-C., Tsai, M.-H., Chen, F.-C., Hsiung, C. A.

Journal:

Year:

2012

Language:

english

File:

PDF, 509 KB

english, 2012

5

Joint Bayesian inference of condition-specific miRNA and transcription factor activities from combined gene and microRNA expression data

Zacher, B., Abnaof, K., Gade, S., Younesi, E., Tresch, A., Frohlich, H.

Journal:

Year:

2012

Language:

english

File:

PDF, 287 KB

english, 2012

6

Identifying differentially expressed transcripts from RNA-seq data with biological variation

Glaus, P., Honkela, A., Rattray, M.

Journal:

Year:

2012

Language:

english

File:

PDF, 623 KB

english, 2012

7

DAVID-WS: a stateful web service to facilitate gene/protein list analysis

Jiao, X., Sherman, B. T., Huang, D. W., Stephens, R., Baseler, M. W., Lane, H. C., Lempicki, R. A.

Journal:

Year:

2012

Language:

english

File:

PDF, 150 KB

english, 2012

8

Two effective methods for correcting experimental high-throughput screening data

Dragiev, P., Nadon, R., Makarenkov, V.

Journal:

Year:

2012

Language:

english

File:

PDF, 678 KB

english, 2012

9

INRICH: interval-based enrichment analysis for genome-wide association studies

Lee, P. H., O'Dushlaine, C., Thomas, B., Purcell, S. M.

Journal:

Year:

2012

Language:

english

File:

PDF, 89 KB

english, 2012

10

A novel variational Bayes multiple locus Z-statistic for genome-wide association studies with Bayesian model averaging

Logsdon, B. A., Carty, C. L., Reiner, A. P., Dai, J. Y., Kooperberg, C.

Journal:

Year:

2012

Language:

english

File:

PDF, 487 KB

english, 2012

11

Boosting automatic event extraction from the literature using domain adaptation and coreference resolution

Miwa, M., Thompson, P., Ananiadou, S.

Journal:

Year:

2012

Language:

english

File:

PDF, 786 KB

english, 2012

12

Ka-me: a Voronoi image analyzer

Khiripet, N., Khantuwan, W., Jungck, J. R.

Journal:

Year:

2012

Language:

english

File:

PDF, 407 KB

english, 2012

13

easyFRAP: an interactive, easy-to-use tool for qualitative and quantitative analysis of FRAP data

Rapsomaniki, M. A., Kotsantis, P., Symeonidou, I.-E., Giakoumakis, N.-N., Taraviras, S., Lygerou, Z.

Journal:

Year:

2012

Language:

english

File:

PDF, 292 KB

english, 2012

14

Statistical interpretation of machine learning-based feature importance scores for biomarker discovery

Huynh-Thu, V. A., Saeys, Y., Wehenkel, L., Geurts, P.

Journal:

Year:

2012

Language:

english

File:

PDF, 486 KB

english, 2012

15

SEQCHIP: a powerful method to integrate sequence and genotype data for the detection of rare variant associations

Liu, D. J., Leal, S. M.

Journal:

Year:

2012

Language:

english

File:

PDF, 290 KB

english, 2012

16

CNVRuler: a copy number variation-based case-control association analysis tool

Kim, J.-H., Hu, H.-J., Yim, S.-H., Bae, J. S., Kim, S.-Y., Chung, Y.-J.

Journal:

Year:

2012

Language:

english

File:

PDF, 211 KB

english, 2012

17

Speeding up tandem mass spectral identification using indexes

Liu, X., Mammana, A., Bafna, V.

Journal:

Year:

2012

Language:

english

File:

PDF, 1.28 MB

english, 2012

18

CalMaTe: a method and software to improve allele-specific copy number of SNP arrays for downstream segmentation

Ortiz-Estevez, M., Aramburu, A., Bengtsson, H., Neuvial, P., Rubio, A.

Journal:

Year:

2012

Language:

english

File:

PDF, 253 KB

english, 2012

19

In silico identification software (ISIS): a machine learning approach to tandem mass spectral identification of lipids

Kangas, L. J., Metz, T. O., Isaac, G., Schrom, B. T., Ginovska-Pangovska, B., Wang, L., Tan, L., Lewis, R. R., Miller, J. H.

Journal:

Year:

2012

Language:

english

File:

PDF, 412 KB

english, 2012

20

BRAT-BW: efficient and accurate mapping of bisulfite-treated reads

Harris, E. Y., Ponts, N., Le Roch, K. G., Lonardi, S.

Journal:

Year:

2012

Language:

english

File:

PDF, 147 KB

english, 2012

21

Analysis of case-control association studies with known risk variants

Zaitlen, N., Pasaniuc, B., Patterson, N., Pollack, S., Voight, B., Groop, L., Altshuler, D., Henderson, B. E., Kolonel, L. N., Marchand, L. L., Waters, K., Haiman, C. A., Stranger, B. E., Dermitzakis,

Journal:

Year:

2012

Language:

english

File:

PDF, 321 KB

english, 2012

22

Semantic integration of physiology phenotypes with an application to the Cellular Phenotype Ontology

Hoehndorf, R., Harris, M. A., Herre, H., Rustici, G., Gkoutos, G. V.

Journal:

Year:

2012

Language:

english

File:

PDF, 375 KB

english, 2012

23

Accurate extension of multiple sequence alignments using a phylogeny-aware graph algorithm

Loytynoja, A., Vilella, A. J., Goldman, N.

Journal:

Year:

2012

Language:

english

File:

PDF, 622 KB

english, 2012