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Volume 28; Issue 14
Main
Bioinformatics
Volume 28; Issue 14
Bioinformatics
Volume 28; Issue 14
1
Strelka: accurate somatic small-variant calling from sequenced tumor-normal sample pairs
Saunders, C. T.
,
Wong, W. S. W.
,
Swamy, S.
,
Becq, J.
,
Murray, L. J.
,
Cheetham, R. K.
Journal:
Bioinformatics
Year:
2012
Language:
english
File:
PDF, 182 KB
Your tags:
english, 2012
2
Efficient RNA pairwise structure comparison by SETTER method
Hoksza, D.
,
Svozil, D.
Journal:
Bioinformatics
Year:
2012
Language:
english
File:
PDF, 734 KB
Your tags:
english, 2012
3
Exhaustive database searching for amino acid mutations in proteomes
Hyatt, D.
,
Pan, C.
Journal:
Bioinformatics
Year:
2012
Language:
english
File:
PDF, 270 KB
Your tags:
english, 2012
4
Identifying mechanistic similarities in drug responses
Zhao, C.
,
Hua, J.
,
Bittner, M. L.
,
Ivanov, I.
,
Dougherty, a. E. R.
Journal:
Bioinformatics
Year:
2012
Language:
english
File:
PDF, 1.35 MB
Your tags:
english, 2012
5
Genome-scale analysis of interaction dynamics reveals organization of biological networks
Das, J.
,
Mohammed, J.
,
Yu, H.
Journal:
Bioinformatics
Year:
2012
Language:
english
File:
PDF, 2.69 MB
Your tags:
english, 2012
6
HCS-Analyzer: open source software for high-content screening data correction and analysis
Ogier, A.
,
Dorval, T.
Journal:
Bioinformatics
Year:
2012
Language:
english
File:
PDF, 310 KB
Your tags:
english, 2012
7
OSA: a fast and accurate alignment tool for RNA-Seq
Hu, J.
,
Ge, H.
,
Newman, M.
,
Liu, K.
Journal:
Bioinformatics
Year:
2012
Language:
english
File:
PDF, 136 KB
Your tags:
english, 2012
8
CPSS: a computational platform for the analysis of small RNA deep sequencing data
Zhang, Y.
,
Xu, B.
,
Yang, Y.
,
Ban, R.
,
Zhang, H.
,
Jiang, X.
,
Cooke, H. J.
,
Xue, Y.
,
Shi, Q.
Journal:
Bioinformatics
Year:
2012
Language:
english
File:
PDF, 206 KB
Your tags:
english, 2012
9
CUSHAW: a CUDA compatible short read aligner to large genomes based on the Burrows-Wheeler transform
Liu, Y.
,
Schmidt, B.
,
Maskell, D. L.
Journal:
Bioinformatics
Year:
2012
Language:
english
File:
PDF, 992 KB
Your tags:
english, 2012
10
BreakFusion: targeted assembly-based identification of gene fusions in whole transcriptome paired-end sequencing data
Chen, K.
,
Wallis, J. W.
,
Kandoth, C.
,
Kalicki-Veizer, J. M.
,
Mungall, K. L.
,
Mungall, A. J.
,
Jones, S. J.
,
Marra, M. A.
,
Ley, T. J.
,
Mardis, E. R.
,
Wilson, R. K.
,
Weinstein, J. N.
,
Ding, L.
Journal:
Bioinformatics
Year:
2012
Language:
english
File:
PDF, 209 KB
Your tags:
english, 2012
11
Fast computation for genome-wide association studies using boosted one-step statistics
Voorman, A.
,
Rice, K.
,
Lumley, T.
Journal:
Bioinformatics
Year:
2012
Language:
english
File:
PDF, 318 KB
Your tags:
english, 2012
12
BEDOPS: high-performance genomic feature operations
Neph, S.
,
Kuehn, M. S.
,
Reynolds, A. P.
,
Haugen, E.
,
Thurman, R. E.
,
Johnson, A. K.
,
Rynes, E.
,
Maurano, M. T.
,
Vierstra, J.
,
Thomas, S.
,
Sandstrom, R.
,
Humbert, R.
,
Stamatoyannopoulos, J. A.
Journal:
Bioinformatics
Year:
2012
Language:
english
File:
PDF, 255 KB
Your tags:
english, 2012
13
SINA: Accurate high-throughput multiple sequence alignment of ribosomal RNA genes
Pruesse, E.
,
Peplies, J.
,
Glockner, F. O.
Journal:
Bioinformatics
Year:
2012
Language:
english
File:
PDF, 378 KB
Your tags:
english, 2012
14
Exploring single-sample SNP and INDEL calling with whole-genome de novo assembly
Li, H.
Journal:
Bioinformatics
Year:
2012
Language:
english
File:
PDF, 177 KB
Your tags:
english, 2012
15
Robustness and accuracy of functional modules in integrated network analysis
Beisser, D.
,
Brunkhorst, S.
,
Dandekar, T.
,
Klau, G. W.
,
Dittrich, M. T.
,
Muller, T.
Journal:
Bioinformatics
Year:
2012
Language:
english
File:
PDF, 943 KB
Your tags:
english, 2012
16
MicrobeDB: a locally maintainable database of microbial genomic sequences
Langille, M. G. I.
,
Laird, M. R.
,
Hsiao, W. W. L.
,
Chiu, T. A.
,
Eisen, J. A.
,
Brinkman, F. S. L.
Journal:
Bioinformatics
Year:
2012
Language:
english
File:
PDF, 70 KB
Your tags:
english, 2012
17
Mosaic: making biological sense of complex networks
Zhang, C.
,
Hanspers, K.
,
Kuchinsky, A.
,
Salomonis, N.
,
Xu, D.
,
Pico, A. R.
Journal:
Bioinformatics
Year:
2012
Language:
english
File:
PDF, 361 KB
Your tags:
english, 2012
18
MotifSuite: workflow for probabilistic motif detection and assessment
Claeys, M.
,
Storms, V.
,
Sun, H.
,
Michoel, T.
,
Marchal, K.
Journal:
Bioinformatics
Year:
2012
Language:
english
File:
PDF, 120 KB
Your tags:
english, 2012
19
Correcting for the bias due to expression specificity improves the estimation of constrained evolution of expression between mouse and human
Piasecka, B.
,
Robinson-Rechavi, M.
,
Bergmann, S.
Journal:
Bioinformatics
Year:
2012
Language:
english
File:
PDF, 406 KB
Your tags:
english, 2012
20
Small-molecule inhibitor starting points learned from protein-protein interaction inhibitor structure
Koes, D. R.
,
Camacho, C. J.
Journal:
Bioinformatics
Year:
2012
File:
PDF, 36 KB
Your tags:
2012
21
CodonLogo: a sequence logo-based viewer for codon patterns
Sharma, V.
,
Murphy, D. P.
,
Provan, G.
,
Baranov, P. V.
Journal:
Bioinformatics
Year:
2012
Language:
english
File:
PDF, 233 KB
Your tags:
english, 2012
22
iFad: an integrative factor analysis model for drug-pathway association inference
Ma, H.
,
Zhao, H.
Journal:
Bioinformatics
Year:
2012
Language:
english
File:
PDF, 609 KB
Your tags:
english, 2012
23
SRMA: an R package for resequencing array data analysis
Zhang, N.
,
Xu, Y.
,
O'Hely, M.
,
Speed, T. P.
,
Scharfe, C.
,
Wang, W.
Journal:
Bioinformatics
Year:
2012
Language:
english
File:
PDF, 293 KB
Your tags:
english, 2012
24
Gossamer -- a resource-efficient de novo assembler
Conway, T.
,
Wazny, J.
,
Bromage, A.
,
Zobel, J.
,
Beresford-Smith, B.
Journal:
Bioinformatics
Year:
2012
Language:
english
File:
PDF, 78 KB
Your tags:
english, 2012
25
IRView: a database and viewer for protein interacting regions
Fujimori, S.
,
Hirai, N.
,
Masuoka, K.
,
Oshikubo, T.
,
Yamashita, T.
,
Washio, T.
,
Saito, A.
,
Nagasaki, M.
,
Miyano, S.
,
Miyamoto-Sato, E.
Journal:
Bioinformatics
Year:
2012
Language:
english
File:
PDF, 71 KB
Your tags:
english, 2012
26
R/EBcoexpress: an empirical Bayesian framework for discovering differential co-expression
Dawson, J. A.
,
Ye, S.
,
Kendziorski, C.
Journal:
Bioinformatics
Year:
2012
Language:
english
File:
PDF, 115 KB
Your tags:
english, 2012
27
Anonymous nuclear loci in non-model organisms: making the most of high-throughput genome surveys
Bertozzi, T.
,
Sanders, K. L.
,
Sistrom, M. J.
,
Gardner, M. G.
Journal:
Bioinformatics
Year:
2012
Language:
english
File:
PDF, 90 KB
Your tags:
english, 2012
28
Marker2sequence, mine your QTL regions for candidate genes
Chibon, P.-Y.
,
Schoof, H.
,
Visser, R. G. F.
,
Finkers, R.
Journal:
Bioinformatics
Year:
2012
Language:
english
File:
PDF, 69 KB
Your tags:
english, 2012
29
A holistic in silico approach to predict functional sites in protein structures
Segura, J.
,
Jones, P. F.
,
Fernandez-Fuentes, N.
Journal:
Bioinformatics
Year:
2012
Language:
english
File:
PDF, 550 KB
Your tags:
english, 2012
30
Improvement of 3D protein models using multiple templates guided by single-template model quality assessment
Buenavista, M. T.
,
Roche, D. B.
,
McGuffin, L. J.
Journal:
Bioinformatics
Year:
2012
Language:
english
File:
PDF, 303 KB
Your tags:
english, 2012
31
The Hematopoietic Expression Viewer: expanding mobile apps as a scientific tool
James, R. A.
,
Rao, M. M.
,
Chen, E. S.
,
Goodell, M. A.
,
Shaw, C. A.
Journal:
Bioinformatics
Year:
2012
Language:
english
File:
PDF, 195 KB
Your tags:
english, 2012
32
regSNPs: a strategy for prioritizing regulatory single nucleotide substitutions
Teng, M.
,
Ichikawa, S.
,
Padgett, L. R.
,
Wang, Y.
,
Mort, M.
,
Cooper, D. N.
,
Koller, D. L.
,
Foroud, T.
,
Edenberg, H. J.
,
Econs, M. J.
,
Liu, Y.
Journal:
Bioinformatics
Year:
2012
Language:
english
File:
PDF, 546 KB
Your tags:
english, 2012
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