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Volume 28; Issue 20
Main
Bioinformatics
Volume 28; Issue 20
Bioinformatics
Volume 28; Issue 20
1
Quantifying uniformity of mapped reads
Hower, V.
,
Starfield, R.
,
Roberts, A.
,
Pachter, L.
Journal:
Bioinformatics
Year:
2012
Language:
english
File:
PDF, 113 KB
Your tags:
english, 2012
2
SimRare: a program to generate and analyze sequence-based data for association studies of quantitative and qualitative traits
Li, B.
,
Wang, G.
,
Leal, S. M.
Journal:
Bioinformatics
Year:
2012
Language:
english
File:
PDF, 78 KB
Your tags:
english, 2012
3
EFICAz2.5: application of a high-precision enzyme function predictor to 396 proteomes
Kumar, N.
,
Skolnick, J.
Journal:
Bioinformatics
Year:
2012
Language:
english
File:
PDF, 162 KB
Your tags:
english, 2012
4
RazerS 3: Faster, fully sensitive read mapping
Weese, D.
,
Holtgrewe, M.
,
Reinert, K.
Journal:
Bioinformatics
Year:
2012
Language:
english
File:
PDF, 334 KB
Your tags:
english, 2012
5
EuGene: maximizing synthetic gene design for heterologous expression
Gaspar, P.
,
Oliveira, J. L.
,
Frommlet, J.
,
Santos, M. A. S.
,
Moura, G.
Journal:
Bioinformatics
Year:
2012
Language:
english
File:
PDF, 197 KB
Your tags:
english, 2012
6
PPfold 3.0: fast RNA secondary structure prediction using phylogeny and auxiliary data
Sukosd, Z.
,
Knudsen, B.
,
Kjems, J.
,
Pedersen, C. N. S.
Journal:
Bioinformatics
Year:
2012
Language:
english
File:
PDF, 81 KB
Your tags:
english, 2012
7
A robust approach to extract biomedical events from literature
Bui, Q.-C.
,
Sloot, P. M. A.
Journal:
Bioinformatics
Year:
2012
Language:
english
File:
PDF, 276 KB
Your tags:
english, 2012
8
FacPad: Bayesian sparse factor modeling for the inference of pathways responsive to drug treatment
Ma, H.
,
Zhao, H.
Journal:
Bioinformatics
Year:
2012
Language:
english
File:
PDF, 486 KB
Your tags:
english, 2012
9
treePL: divergence time estimation using penalized likelihood for large phylogenies
Smith, S. A.
,
O'Meara, B. C.
Journal:
Bioinformatics
Year:
2012
Language:
english
File:
PDF, 94 KB
Your tags:
english, 2012
10
Systematic comparison of RNA-Seq normalization methods using measurement error models
Sun, Z.
,
Zhu, Y.
Journal:
Bioinformatics
Year:
2012
Language:
english
File:
PDF, 366 KB
Your tags:
english, 2012
11
COMPADRE: an R and web resource for pathway activity analysis by component decompositions
Ramos-Rodriguez, R.-R.
,
Cuevas-Diaz-Duran, R.
,
Falciani, F.
,
Tamez-Pena, J.-G.
,
Trevino, V.
Journal:
Bioinformatics
Year:
2012
Language:
english
File:
PDF, 166 KB
Your tags:
english, 2012
12
An empirical Bayes mixture model for SNP detection in pooled sequencing data
Zhou, B.
Journal:
Bioinformatics
Year:
2012
Language:
english
File:
PDF, 300 KB
Your tags:
english, 2012
13
MEGA-CC: computing core of molecular evolutionary genetics analysis program for automated and iterative data analysis
Kumar, S.
,
Stecher, G.
,
Peterson, D.
,
Tamura, K.
Journal:
Bioinformatics
Year:
2012
Language:
english
File:
PDF, 143 KB
Your tags:
english, 2012
14
TRFolder-W: a web server for telomerase RNA structure prediction in yeast genomes
Zhang, D.
,
Xue, X.
,
Malmberg, R. L.
,
Cai, L.
Journal:
Bioinformatics
Year:
2012
Language:
english
File:
PDF, 75 KB
Your tags:
english, 2012
15
PRISM: Pair-read informed split-read mapping for base-pair level detection of insertion, deletion and structural variants
Jiang, Y.
,
Wang, Y.
,
Brudno, M.
Journal:
Bioinformatics
Year:
2012
Language:
english
File:
PDF, 454 KB
Your tags:
english, 2012
16
BioJava: an open-source framework for bioinformatics in 2012
Prlic, A.
,
Yates, A.
,
Bliven, S. E.
,
Rose, P. W.
,
Jacobsen, J.
,
Troshin, P. V.
,
Chapman, M.
,
Gao, J.
,
Koh, C. H.
,
Foisy, S.
,
Holland, R.
,
Rimsa, G.
,
Heuer, M. L.
,
Brandstatter-Muller, H.
,
Bourne, P. E
Journal:
Bioinformatics
Year:
2012
Language:
english
File:
PDF, 213 KB
Your tags:
english, 2012
17
Application of asymmetric statistical potentials to antibody-protein docking
Brenke, R.
,
Hall, D. R.
,
Chuang, G.-Y.
,
Comeau, S. R.
,
Bohnuud, T.
,
Beglov, D.
,
Schueler-Furman, O.
,
Vajda, S.
,
Kozakov, D.
Journal:
Bioinformatics
Year:
2012
Language:
english
File:
PDF, 250 KB
Your tags:
english, 2012
18
Qualimap: evaluating next-generation sequencing alignment data
Garcia-Alcalde, F.
,
Okonechnikov, K.
,
Carbonell, J.
,
Cruz, L. M.
,
Gotz, S.
,
Tarazona, S.
,
Dopazo, J.
,
Meyer, T. F.
,
Conesa, A.
Journal:
Bioinformatics
Year:
2012
Language:
english
File:
PDF, 157 KB
Your tags:
english, 2012
19
Impact of ontology evolution on functional analyses
Gross, A.
,
Hartung, M.
,
Prufer, K.
,
Kelso, J.
,
Rahm, E.
Journal:
Bioinformatics
Year:
2012
Language:
english
File:
PDF, 730 KB
Your tags:
english, 2012
20
Identification of trans-acting siRNAs and their regulatory cascades in grapevine
Zhang, C.
,
Li, G.
,
Wang, J.
,
Fang, J.
Journal:
Bioinformatics
Year:
2012
Language:
english
File:
PDF, 567 KB
Your tags:
english, 2012
21
Intensity quantile estimation and mapping--a novel algorithm for the correction of image non-uniformity bias in HCS data
Lo, E.
,
Soleilhac, E.
,
Martinez, A.
,
Lafanechere, L.
,
Nadon, R.
Journal:
Bioinformatics
Year:
2012
Language:
english
File:
PDF, 1.07 MB
Your tags:
english, 2012
22
BasyLiCA: a tool for automatic processing of a Bacterial Live Cell Array
Aichaoui, L.
,
Jules, M.
,
Le Chat, L.
,
Aymerich, S.
,
Fromion, V.
,
Goelzer, A.
Journal:
Bioinformatics
Year:
2012
Language:
english
File:
PDF, 161 KB
Your tags:
english, 2012
23
Positive-unlabeled learning for disease gene identification
Yang, P.
,
Li, X.-L.
,
Mei, J.-P.
,
Kwoh, C.-K.
,
Ng, S.-K.
Journal:
Bioinformatics
Year:
2012
Language:
english
File:
PDF, 257 KB
Your tags:
english, 2012
24
MetiTree: a web application to organize and process high-resolution multi-stage mass spectrometry metabolomics data
Rojas-Cherto, M.
,
van Vliet, M.
,
Peironcely, J. E.
,
van Doorn, R.
,
Kooyman, M.
,
te Beek, T.
,
van Driel, M. A.
,
Hankemeier, T.
,
Reijmers, T.
Journal:
Bioinformatics
Year:
2012
Language:
english
File:
PDF, 276 KB
Your tags:
english, 2012
25
SKEMPI: a Structural Kinetic and Energetic database of Mutant Protein Interactions and its use in empirical models
Moal, I. H.
,
Fernandez-Recio, J.
Journal:
Bioinformatics
Year:
2012
Language:
english
File:
PDF, 397 KB
Your tags:
english, 2012
26
Qualitative translation of relations from BioPAX to SBML qual
Buchel, F.
,
Wrzodek, C.
,
Mittag, F.
,
Drager, A.
,
Eichner, J.
,
Rodriguez, N.
,
Le Novere, N.
,
Zell, A.
Journal:
Bioinformatics
Year:
2012
Language:
english
File:
PDF, 367 KB
Your tags:
english, 2012
27
shortran: a pipeline for small RNA-seq data analysis
Gupta, V.
,
Markmann, K.
,
Pedersen, C. N. S.
,
Stougaard, J.
,
Andersen, S. U.
Journal:
Bioinformatics
Year:
2012
Language:
english
File:
PDF, 173 KB
Your tags:
english, 2012
28
FACETS: multi-faceted functional decomposition of protein interaction networks
Seah, B.-S.
,
Bhowmick, S. S.
,
Forbes Dewey, C.
Journal:
Bioinformatics
Year:
2012
Language:
english
File:
PDF, 596 KB
Your tags:
english, 2012
29
An integrated approach to reduce the impact of minor allele frequency and linkage disequilibrium on variable importance measures for genome-wide data
Walters, R.
,
Laurin, C.
,
Lubke, G. H.
Journal:
Bioinformatics
Year:
2012
Language:
english
File:
PDF, 410 KB
Your tags:
english, 2012
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