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Volume 29; Issue 2
Main
Bioinformatics
Volume 29; Issue 2
Bioinformatics
Volume 29; Issue 2
1
HD-CNV: hotspot detector for copy number variants
Butler, J. L.
,
Osborne Locke, M. E.
,
Hill, K. A.
,
Daley, M.
Journal:
Bioinformatics
Year:
2013
Language:
english
File:
PDF, 184 KB
Your tags:
english, 2013
2
VAGUE: a graphical user interface for the Velvet assembler
Powell, D. R.
,
Seemann, T.
Journal:
Bioinformatics
Year:
2013
Language:
english
File:
PDF, 195 KB
Your tags:
english, 2013
3
An effective framework for reconstructing gene regulatory networks from genetical genomics data
Flassig, R. J.
,
Heise, S.
,
Sundmacher, K.
,
Klamt, S.
Journal:
Bioinformatics
Year:
2013
Language:
english
File:
PDF, 1.17 MB
Your tags:
english, 2013
4
VirusSeq: software to identify viruses and their integration sites using next-generation sequencing of human cancer tissue
Chen, Y.
,
Yao, H.
,
Thompson, E. J.
,
Tannir, N. M.
,
Weinstein, J. N.
,
Su, X.
Journal:
Bioinformatics
Year:
2013
Language:
english
File:
PDF, 172 KB
Your tags:
english, 2013
5
Density parameter estimation for finding clusters of homologous proteins--tracing actinobacterial pathogenicity lifestyles
Rottger, R.
,
Kalaghatgi, P.
,
Sun, P.
,
Soares, S. d. C.
,
Azevedo, V.
,
Wittkop, T.
,
Baumbach, J.
Journal:
Bioinformatics
Year:
2013
File:
PDF, 1.19 MB
Your tags:
2013
6
NetCAD: a network analysis tool for coronary artery disease-associated PPI network
Ren, G.
,
Liu, Z.
Journal:
Bioinformatics
Year:
2013
Language:
english
File:
PDF, 271 KB
Your tags:
english, 2013
7
Drug-target interaction prediction by learning from local information and neighbors
Mei, J.-P.
,
Kwoh, C.-K.
,
Yang, P.
,
Li, X.-L.
,
Zheng, J.
Journal:
Bioinformatics
Year:
2013
Language:
english
File:
PDF, 217 KB
Your tags:
english, 2013
8
Stability analysis of phylogenetic trees
Sheikh, S. I.
,
Kahveci, T.
,
Ranka, S.
,
Gordon Burleigh, J.
Journal:
Bioinformatics
Year:
2013
Language:
english
File:
PDF, 934 KB
Your tags:
english, 2013
9
Defining and predicting structurally conserved regions in protein superfamilies
Huang, I. K.
,
Pei, J.
,
Grishin, N. V.
Journal:
Bioinformatics
Year:
2013
Language:
english
File:
PDF, 461 KB
Your tags:
english, 2013
10
Bridging the scales: semantic integration of quantitative SBML in graphical multi-cellular models and simulations with EPISIM and COPASI
Sutterlin, T.
,
Kolb, C.
,
Dickhaus, H.
,
Jager, D.
,
Grabe, N.
Journal:
Bioinformatics
Year:
2013
Language:
english
File:
PDF, 1.54 MB
Your tags:
english, 2013
11
A Lasso multi-marker mixed model for association mapping with population structure correction
Rakitsch, B.
,
Lippert, C.
,
Stegle, O.
,
Borgwardt, K.
Journal:
Bioinformatics
Year:
2013
Language:
english
File:
PDF, 579 KB
Your tags:
english, 2013
12
A beta-mixture quantile normalization method for correcting probe design bias in Illumina Infinium 450 k DNA methylation data
Teschendorff, A. E.
,
Marabita, F.
,
Lechner, M.
,
Bartlett, T.
,
Tegner, J.
,
Gomez-Cabrero, D.
,
Beck, S.
Journal:
Bioinformatics
Year:
2013
Language:
english
File:
PDF, 420 KB
Your tags:
english, 2013
13
An application of a relational database system for high-throughput prediction of elemental compositions from accurate mass values
Sakurai, N.
,
Ara, T.
,
Kanaya, S.
,
Nakamura, Y.
,
Iijima, Y.
,
Enomoto, M.
,
Motegi, T.
,
Aoki, K.
,
Suzuki, H.
,
Shibata, D.
Journal:
Bioinformatics
Year:
2013
Language:
english
File:
PDF, 85 KB
Your tags:
english, 2013
14
Intron-centric estimation of alternative splicing from RNA-seq data
Pervouchine, D. D.
,
Knowles, D. G.
,
Guigo, R.
Journal:
Bioinformatics
Year:
2013
Language:
english
File:
PDF, 166 KB
Your tags:
english, 2013
15
An empirical Bayes approach for analysis of diverse periodic trends in time-course gene expression data
Kocak, M.
,
Olusegun George, E.
,
Pyne, S.
,
Pounds, S.
Journal:
Bioinformatics
Year:
2013
Language:
english
File:
PDF, 368 KB
Your tags:
english, 2013
16
High-throughput microbial population genomics using the Cortex variation assembler
Iqbal, Z.
,
Turner, I.
,
McVean, G.
Journal:
Bioinformatics
Year:
2013
Language:
english
File:
PDF, 130 KB
Your tags:
english, 2013
17
Visualization and Phospholipid Identification (VaLID): online integrated search engine capable of identifying and visualizing glycerophospholipids with given mass
Blanchard, A. P.
,
McDowell, G. S. V.
,
Valenzuela, N.
,
Xu, H.
,
Gelbard, S.
,
Bertrand, M.
,
Slater, G. W.
,
Figeys, D.
,
Fai, S.
,
Bennett, S. A. L.
Journal:
Bioinformatics
Year:
2013
Language:
english
File:
PDF, 154 KB
Your tags:
english, 2013
18
DOOSS: a tool for visual analysis of data overlaid on secondary structures
Golden, M.
,
Martin, D.
Journal:
Bioinformatics
Year:
2013
Language:
english
File:
PDF, 130 KB
Your tags:
english, 2013
19
Non-redundant compendium of human ncRNA genes in GeneCards
Belinky, F.
,
Bahir, I.
,
Stelzer, G.
,
Zimmerman, S.
,
Rosen, N.
,
Nativ, N.
,
Dalah, I.
,
Iny Stein, T.
,
Rappaport, N.
,
Mituyama, T.
,
Safran, M.
,
Lancet, D.
Journal:
Bioinformatics
Year:
2013
Language:
english
File:
PDF, 559 KB
Your tags:
english, 2013
20
A system for exact and approximate genetic linkage analysis of SNP data in large pedigrees
Silberstein, M.
,
Weissbrod, O.
,
Otten, L.
,
Tzemach, A.
,
Anisenia, A.
,
Shtark, O.
,
Tuberg, D.
,
Galfrin, E.
,
Gannon, I.
,
Shalata, A.
,
Borochowitz, Z. U.
,
Dechter, R.
,
Thompson, E.
,
Geiger, D.
Journal:
Bioinformatics
Year:
2013
Language:
english
File:
PDF, 474 KB
Your tags:
english, 2013
21
NURBS: a database of experimental and predicted nuclear receptor binding sites of mouse
Fang, Y.
,
Liu, H.-X.
,
Zhang, N.
,
Guo, G. L.
,
Wan, Y.-J. Y.
,
Fang, J.
Journal:
Bioinformatics
Year:
2013
Language:
english
File:
PDF, 89 KB
Your tags:
english, 2013
22
ImgLib2--generic image processing in Java
Pietzsch, T.
,
Preibisch, S.
,
Tomancak, P.
,
Saalfeld, S.
Journal:
Bioinformatics
Year:
2013
Language:
english
File:
PDF, 44 KB
Your tags:
english, 2013
23
Bioclipse-R: integrating management and visualization of life science data with statistical analysis
Spjuth, O.
,
Georgiev, V.
,
Carlsson, L.
,
Alvarsson, J.
,
Berg, A.
,
Willighagen, E.
,
Wikberg, J. E. S.
,
Eklund, M.
Journal:
Bioinformatics
Year:
2013
Language:
english
File:
PDF, 367 KB
Your tags:
english, 2013
24
PTID: an integrated web resource and computational tool for agrochemical discovery
Gong, J.
,
Liu, X.
,
Cao, X.
,
Diao, Y.
,
Gao, D.
,
Li, H.
,
Qian, X.
Journal:
Bioinformatics
Year:
2013
Language:
english
File:
PDF, 87 KB
Your tags:
english, 2013
25
PASS-bis: a bisulfite aligner suitable for whole methylome analysis of Illumina and SOLiD reads
Campagna, D.
,
Telatin, A.
,
Forcato, C.
,
Vitulo, N.
,
Valle, G.
Journal:
Bioinformatics
Year:
2013
Language:
english
File:
PDF, 150 KB
Your tags:
english, 2013
26
mzMatch-ISO: an R tool for the annotation and relative quantification of isotope-labelled mass spectrometry data
Chokkathukalam, A.
,
Jankevics, A.
,
Creek, D. J.
,
Achcar, F.
,
Barrett, M. P.
,
Breitling, R.
Journal:
Bioinformatics
Year:
2013
Language:
english
File:
PDF, 287 KB
Your tags:
english, 2013
27
Scaffolding low quality genomes using orthologous protein sequences
Li, Y. I.
,
Copley, R. R.
Journal:
Bioinformatics
Year:
2013
Language:
english
File:
PDF, 299 KB
Your tags:
english, 2013
28
Efficient statistical significance approximation for local similarity analysis of high-throughput time series data
Xia, L. C.
,
Ai, D.
,
Cram, J.
,
Fuhrman, J. A.
,
Sun, F.
Journal:
Bioinformatics
Year:
2013
Language:
english
File:
PDF, 530 KB
Your tags:
english, 2013
29
Largenet2: an object-oriented programming library for simulating large adaptive networks
Zschaler, G.
,
Gross, T.
Journal:
Bioinformatics
Year:
2013
Language:
english
File:
PDF, 95 KB
Your tags:
english, 2013
30
iBAG: integrative Bayesian analysis of high-dimensional multiplatform genomics data
Wang, W.
,
Baladandayuthapani, V.
,
Morris, J. S.
,
Broom, B. M.
,
Manyam, G.
,
Do, K.-A.
Journal:
Bioinformatics
Year:
2013
Language:
english
File:
PDF, 474 KB
Your tags:
english, 2013
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