Volume 29; Issue 21

Main
Bioinformatics
Volume 29; Issue 21

Bioinformatics

Volume 29; Issue 21

1

eSBMTools 1.0: enhanced native structure-based modeling tools

Lutz, B., Sinner, C., Heuermann, G., Verma, A., Schug, A.

Journal:

Year:

2013

Language:

english

File:

PDF, 153 KB

english, 2013

2

iBMQ: a R/Bioconductor package for integrated Bayesian modeling of eQTL data

Imholte, G. C., Scott-Boyer, M.-P., Labbe, A., Deschepper, C. F., Gottardo, R.

Journal:

Year:

2013

Language:

english

File:

PDF, 185 KB

english, 2013

3

LC-IMS-MS Feature Finder: detecting multidimensional liquid chromatography, ion mobility and mass spectrometry features in complex datasets

Crowell, K. L., Slysz, G. W., Baker, E. S., LaMarche, B. L., Monroe, M. E., Ibrahim, Y. M., Payne, S. H., Anderson, G. A., Smith, R. D.

Journal:

Year:

2013

Language:

english

File:

PDF, 176 KB

english, 2013

4

Multi-profile Bayesian alignment model for LC-MS data analysis with integration of internal standards

Tsai, T.-H., Tadesse, M. G., Di Poto, C., Pannell, L. K., Mechref, Y., Wang, Y., Ressom, H. W.

Journal:

Year:

2013

Language:

english

File:

PDF, 1.43 MB

english, 2013

5

NextGenMap: fast and accurate read mapping in highly polymorphic genomes

Sedlazeck, F. J., Rescheneder, P., von Haeseler, A.

Journal:

Year:

2013

Language:

english

File:

PDF, 129 KB

english, 2013

6

Multiple alignment-free sequence comparison

Ren, J., Song, K., Sun, F., Deng, M., Reinert, G.

Journal:

Year:

2013

Language:

english

File:

PDF, 291 KB

english, 2013

7

ProteoStats--a library for estimating false discovery rates in proteomics pipelines

Yadav, A. K., Kadimi, P. K., Kumar, D., Dash, D.

Journal:

Year:

2013

Language:

english

File:

PDF, 168 KB

english, 2013

8

Identification of transcription factor binding sites from ChIP-seq data at high resolution

Bardet, A. F., Steinmann, J., Bafna, S., Knoblich, J. A., Zeitlinger, J., Stark, A.

Journal:

Year:

2013

Language:

english

File:

PDF, 840 KB

english, 2013

9

The MaSuRCA genome assembler

Zimin, A. V., Marcais, G., Puiu, D., Roberts, M., Salzberg, S. L., Yorke, J. A.

Journal:

Year:

2013

Language:

english

File:

PDF, 277 KB

english, 2013

10

A fast Peptide Match service for UniProt Knowledgebase

Chen, C., Li, Z., Huang, H., Suzek, B. E., Wu, C. H.

Journal:

Year:

2013

Language:

english

File:

PDF, 230 KB

english, 2013

11

Identifying differentially expressed proteins in two-dimensional electrophoresis experiments: inputs from transcriptomics statistical tools

Artigaud, S., Gauthier, O., Pichereau, V.

Journal:

Year:

2013

Language:

english

File:

PDF, 654 KB

english, 2013

12

RDAVIDWebService: a versatile R interface to DAVID

Fresno, C., Fernandez, E. A.

Journal:

Year:

2013

Language:

english

File:

PDF, 140 KB

english, 2013

13

fmcsR: mismatch tolerant maximum common substructure searching in R

Wang, Y., Backman, T. W. H., Horan, K., Girke, T.

Journal:

Year:

2013

Language:

english

File:

PDF, 182 KB

english, 2013

14

Discovering causal pathways linking genomic events to transcriptional states using Tied Diffusion Through Interacting Events (TieDIE)

Paull, E. O., Carlin, D. E., Niepel, M., Sorger, P. K., Haussler, D., Stuart, J. M.

Journal:

Year:

2013

Language:

english

File:

PDF, 428 KB

english, 2013

15

PRAP: an ab initio software package for automated genome-wide analysis of DNA repeats for prokaryotes

Chen, G.-L., Chang, Y.-J., Hsueh, C.-H.

Journal:

Year:

2013

Language:

english

File:

PDF, 216 KB

english, 2013

16

Use of autocorrelation scanning in DNA copy number analysis

Zhang, L., Zhang, L.

Journal:

Year:

2013

Language:

english

File:

PDF, 779 KB

english, 2013

17

Efficient inference of local ancestry

Yang, J. J., Li, J., Buu, A., Williams, L. K.

Journal:

Year:

2013

Language:

english

File:

PDF, 647 KB

english, 2013

18

Bayesian Network Webserver: a comprehensive tool for biological network modeling

Ziebarth, J. D., Bhattacharya, A., Cui, Y.

Journal:

Year:

2013

Language:

english

File:

PDF, 133 KB

english, 2013

19

Imputation of coding variants in African Americans: better performance using data from the exome sequencing project

Duan, Q., Liu, E. Y., Auer, P. L., Zhang, G., Lange, E. M., Jun, G., Bizon, C., Jiao, S., Buyske, S., Franceschini, N., Carlson, C. S., Hsu, L., Reiner, A. P., Peters, U., Haessler, J., Curtis, K., Wa

Journal:

Year:

2013

Language:

english

File:

PDF, 321 KB

english, 2013

20

Optimizing a global alignment of protein interaction networks

Chindelevitch, L., Ma, C.-Y., Liao, C.-S., Berger, B.

Journal:

Year:

2013

Language:

english

File:

PDF, 323 KB

english, 2013

21

lDDT: a local superposition-free score for comparing protein structures and models using distance difference tests

Mariani, V., Biasini, M., Barbato, A., Schwede, T.

Journal:

Year:

2013

Language:

english

File:

PDF, 544 KB

english, 2013

22

A combined omics study on activated macrophages--enhanced role of STATs in apoptosis, immunity and lipid metabolism

Dinasarapu, A. R., Gupta, S., Ram Maurya, M., Fahy, E., Min, J., Sud, M., Gersten, M. J., Glass, C. K., Subramaniam, S.

Journal:

Year:

2013

Language:

english

File:

PDF, 1003 KB

english, 2013

23

A non-independent energy-based multiple sequence alignment improves prediction of transcription factor binding sites

Salama, R. A., Stekel, D. J.

Journal:

Year:

2013

Language:

english

File:

PDF, 491 KB

english, 2013

24

Badger--an accessible genome exploration environment

Elsworth, B., Jones, M., Blaxter, M.

Journal:

Year:

2013

Language:

english

File:

PDF, 1.69 MB

english, 2013

25

Exploiting disjointness axioms to improve semantic similarity measures

Ferreira, J. D., Hastings, J., Couto, F. M.

Journal:

Year:

2013

Language:

english

File:

PDF, 447 KB

english, 2013

26

Accounting for epistatic interactions improves the functional analysis of protein structures

Wilkins, A. D., Venner, E., Marciano, D. C., Erdin, S., Atri, B., Lua, R. C., Lichtarge, O.

Journal:

Year:

2013

Language:

english

File:

PDF, 685 KB

english, 2013

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