Volume 29; Issue 24

Main
Bioinformatics
Volume 29; Issue 24

Bioinformatics

Volume 29; Issue 24

1

ISCB/SPRINGER series in computational biology

Dress, A., Linial, M., Troyanskaya, O., Vingron, M.

Journal:

Year:

2013

Language:

english

File:

PDF, 61 KB

english, 2013

2

BlastGraph: a comparative genomics tool based on BLAST and graph algorithms

Ye, Y., Wei, B., Wen, L., Rayner, S.

Journal:

Year:

2013

Language:

english

File:

PDF, 297 KB

english, 2013

3

An alignment-free test for recombination

Haubold, B., Krause, L., Horn, T., Pfaffelhuber, P.

Journal:

Year:

2013

Language:

english

File:

PDF, 893 KB

english, 2013

4

Lep-MAP: fast and accurate linkage map construction for large SNP datasets

Rastas, P., Paulin, L., Hanski, I., Lehtonen, R., Auvinen, P.

Journal:

Year:

2013

Language:

english

File:

PDF, 156 KB

english, 2013

5

BCov: a method for predicting -sheet topology using sparse inverse covariance estimation and integer programming

Savojardo, C., Fariselli, P., Martelli, P. L., Casadio, R.

Journal:

Year:

2013

Language:

english

File:

PDF, 237 KB

english, 2013

6

GPCR ontology: development and application of a G protein-coupled receptor pharmacology knowledge framework

Przydzial, M. J., Bhhatarai, B., Koleti, A., Vempati, U., Schurer, S. C.

Journal:

Year:

2013

Language:

english

File:

PDF, 562 KB

english, 2013

7

BSeQC: quality control of bisulfite sequencing experiments

Lin, X., Sun, D., Rodriguez, B., Zhao, Q., Sun, H., Zhang, Y., Li, W.

Journal:

Year:

2013

Language:

english

File:

PDF, 151 KB

english, 2013

8

MS2PIP: a tool for MS/MS peak intensity prediction

Degroeve, S., Martens, L.

Journal:

Year:

2013

Language:

english

File:

PDF, 190 KB

english, 2013

9

Design and analysis of large-scale biological rhythm studies: a comparison of algorithms for detecting periodic signals in biological data

Deckard, A., Anafi, R. C., Hogenesch, J. B., Haase, S. B., Harer, J.

Journal:

Year:

2013

Language:

english

File:

PDF, 475 KB

english, 2013

10

MATE-CLEVER: Mendelian-inheritance-aware discovery and genotyping of midsize and long indels

Marschall, T., Hajirasouliha, I., Schonhuth, A.

Journal:

Year:

2013

Language:

english

File:

PDF, 308 KB

english, 2013

11

DockAFM: benchmarking protein structures by docking under AFM topographs

Chaves, R. C., Pellequer, J.-L.

Journal:

Year:

2013

Language:

english

File:

PDF, 274 KB

english, 2013

12

miREval 2.0: a web tool for simple microRNA prediction in genome sequences

Gao, D., Middleton, R., Rasko, J. E. J., Ritchie, W.

Journal:

Year:

2013

Language:

english

File:

PDF, 222 KB

english, 2013

13

STAR: an integrated solution to management and visualization of sequencing data

Wang, T., Liu, J., Shen, L., Tonti-Filippini, J., Zhu, Y., Jia, H., Lister, R., Whitaker, J. W., Ecker, J. R., Millar, A. H., Ren, B., Wang, W.

Journal:

Year:

2013

Language:

english

File:

PDF, 500 KB

english, 2013

14

QSSPN: dynamic simulation of molecular interaction networks describing gene regulation, signalling and whole-cell metabolism in human cells

Fisher, C. P., Plant, N. J., Moore, J. B., Kierzek, A. M.

Journal:

Year:

2013

Language:

english

File:

PDF, 518 KB

english, 2013

15

Methods and challenges in timing chromosomal abnormalities within cancer samples

Purdom, E., Ho, C., Grasso, C. S., Quist, M. J., Cho, R. J., Spellman, P.

Journal:

Year:

2013

Language:

english

File:

PDF, 590 KB

english, 2013

16

customProDB: an R package to generate customized protein databases from RNA-Seq data for proteomics search

Wang, X., Zhang, B.

Journal:

Year:

2013

Language:

english

File:

PDF, 358 KB

english, 2013

17

Optimized atomic statistical potentials: assessment of protein interfaces and loops

Dong, G. Q., Fan, H., Schneidman-Duhovny, D., Webb, B., Sali, A.

Journal:

Year:

2013

Language:

english

File:

PDF, 864 KB

english, 2013

18

Molecular causes of transcriptional response: a Bayesian prior knowledge approach

Zarringhalam, K., Enayetallah, A., Gutteridge, A., Sidders, B., Ziemek, D.

Journal:

Year:

2013

Language:

english

File:

PDF, 498 KB

english, 2013

19

Accurate prediction of bacterial type IV secreted effectors using amino acid composition and PSSM profiles

Zou, L., Nan, C., Hu, F.

Journal:

Year:

2013

Language:

english

File:

PDF, 452 KB

english, 2013

20

Fuzzy optimization for detecting enzyme targets of human uric acid metabolism

Hsu, K.-C., Wang, F.-S.

Journal:

Year:

2013

Language:

english

File:

PDF, 743 KB

english, 2013

21

Are graph databases ready for bioinformatics?

Have, C. T., Jensen, L. J.

Journal:

Year:

2013

Language:

english

File:

PDF, 133 KB

english, 2013

22

Compound cis-regulatory elements with both boundary and enhancer sequences in the human genome

Jjingo, D., Wang, J., Conley, A. B., Lunyak, V. V., Jordan, I. K.

Journal:

Year:

2013

Language:

english

File:

PDF, 430 KB

english, 2013

23

WebGLORE: a Web service for Grid LOgistic REgression

Jiang, W., Li, P., Wang, S., Wu, Y., Xue, M., Ohno-Machado, L., Jiang, X.

Journal:

Year:

2013

Language:

english

File:

PDF, 172 KB

english, 2013

24

ISCB: past-present perspective for the International Society for Computational Biology

Journal:

Year:

2013

Language:

english

File:

PDF, 163 KB

english, 2013

25

BioServices: a common Python package to access biological Web Services programmatically

Cokelaer, T., Pultz, D., Harder, L. M., Serra-Musach, J., Saez-Rodriguez, J.

Journal:

Year:

2013

Language:

english

File:

PDF, 176 KB

english, 2013

26

ReportingTools: an automated result processing and presentation toolkit for high-throughput genomic analyses

Huntley, M. A., Larson, J. L., Chaivorapol, C., Becker, G., Lawrence, M., Hackney, J. A., Kaminker, J. S.

Journal:

Year:

2013

Language:

english

File:

PDF, 534 KB

english, 2013

27

INVEX--a web-based tool for integrative visualization of expression data

Xia, J., Lyle, N. H., Mayer, M. L., Pena, O. M., Hancock, R. E. W.

Journal:

Year:

2013

Language:

english

File:

PDF, 226 KB

english, 2013