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Volume 31; Issue 1
Main
Bioinformatics
Volume 31; Issue 1
Bioinformatics
Volume 31; Issue 1
1
Insights into structural variations and genome rearrangements in prokaryotic genomes
Periwal, V.
,
Scaria, V.
Journal:
Bioinformatics
Year:
2015
Language:
english
File:
PDF, 397 KB
Your tags:
english, 2015
2
Gene regulatory networks by transcription factors and microRNAs in breast cancer
Qin, S.
,
Ma, F.
,
Chen, L.
Journal:
Bioinformatics
Year:
2015
Language:
english
File:
PDF, 685 KB
Your tags:
english, 2015
3
ballaxy: web services for structural bioinformatics
Hildebrandt, A. K.
,
Stockel, D.
,
Fischer, N. M.
,
de la Garza, L.
,
Kruger, J.
,
Nickels, S.
,
Rottig, M.
,
Scharfe, C.
,
Schumann, M.
,
Thiel, P.
,
Lenhof, H.-P.
,
Kohlbacher, O.
,
Hildebrandt, A.
Journal:
Bioinformatics
Year:
2015
Language:
english
File:
PDF, 80 KB
Your tags:
english, 2015
4
cddApp: a Cytoscape app for accessing the NCBI conserved domain database
Morris, J. H.
,
Wu, A.
,
Yamashita, R. A.
,
Marchler-Bauer, A.
,
Ferrin, T. E.
Journal:
Bioinformatics
Year:
2015
Language:
english
File:
PDF, 406 KB
Your tags:
english, 2015
5
Making novel proteins from pseudogenes
Shidhi, P. R.
,
Suravajhala, P.
,
Nayeema, A.
,
Nair, A. S.
,
Singh, S.
,
Dhar, P. K.
Journal:
Bioinformatics
Year:
2015
Language:
english
File:
PDF, 620 KB
Your tags:
english, 2015
6
CCharPPI web server: computational characterization of protein-protein interactions from structure
Moal, I. H.
,
Jimenez-Garcia, B.
,
Fernandez-Recio, J.
Journal:
Bioinformatics
Year:
2015
Language:
english
File:
PDF, 59 KB
Your tags:
english, 2015
7
VirVarSeq: a low-frequency virus variant detection pipeline for Illumina sequencing using adaptive base-calling accuracy filtering
Verbist, B. M. P.
,
Thys, K.
,
Reumers, J.
,
Wetzels, Y.
,
Van der Borght, K.
,
Talloen, W.
,
Aerssens, J.
,
Clement, L.
,
Thas, O.
Journal:
Bioinformatics
Year:
2015
Language:
english
File:
PDF, 1.00 MB
Your tags:
english, 2015
8
Improved rat genome gene prediction by integration of ESTs with RNA-Seq information
Li, L.
,
Chen, E.
,
Yang, C.
,
Zhu, J.
,
Jayaraman, P.
,
De Pons, J.
,
Kaczorowski, C. C.
,
Jacob, H. J.
,
Greene, A. S.
,
Hodges, M. R.
,
Cowley, A. W.
,
Liang, M.
,
Xu, H.
,
Liu, P.
,
Lu, Y.
Journal:
Bioinformatics
Year:
2015
Language:
english
File:
PDF, 1.11 MB
Your tags:
english, 2015
9
Individual-level analysis of differential expression of genes and pathways for personalized medicine
Wang, H.
,
Sun, Q.
,
Zhao, W.
,
Qi, L.
,
Gu, Y.
,
Li, P.
,
Zhang, M.
,
Li, Y.
,
Liu, S.-L.
,
Guo, Z.
Journal:
Bioinformatics
Year:
2015
Language:
english
File:
PDF, 436 KB
Your tags:
english, 2015
10
Genomon ITDetector: a tool for somatic internal tandem duplication detection from cancer genome sequencing data
Chiba, K.
,
Shiraishi, Y.
,
Nagata, Y.
,
Yoshida, K.
,
Imoto, S.
,
Ogawa, S.
,
Miyano, S.
Journal:
Bioinformatics
Year:
2015
Language:
english
File:
PDF, 432 KB
Your tags:
english, 2015
11
JAMM: a peak finder for joint analysis of NGS replicates
Ibrahim, M. M.
,
Lacadie, S. A.
,
Ohler, U.
Journal:
Bioinformatics
Year:
2015
Language:
english
File:
PDF, 4.30 MB
Your tags:
english, 2015
12
RAMONA: a Web application for gene set analysis on multilevel omics data
Sass, S.
,
Buettner, F.
,
Mueller, N. S.
,
Theis, F. J.
Journal:
Bioinformatics
Year:
2015
Language:
english
File:
PDF, 344 KB
Your tags:
english, 2015
13
Snowball: resampling combined with distance-based regression to discover transcriptional consequences of a driver mutation
Xu, Y.
,
Guo, X.
,
Sun, J.
,
Zhao, Z.
Journal:
Bioinformatics
Year:
2015
Language:
english
File:
PDF, 451 KB
Your tags:
english, 2015
14
mod_bio: Apache modules for Next-Generation sequencing data
Lindenbaum, P.
,
Redon, R.
Journal:
Bioinformatics
Year:
2015
Language:
english
File:
PDF, 241 KB
Your tags:
english, 2015
15
UNDO: a Bioconductor R package for unsupervised deconvolution of mixed gene expressions in tumor samples
Wang, N.
,
Gong, T.
,
Clarke, R.
,
Chen, L.
,
Shih, I.-M.
,
Zhang, Z.
,
Levine, D. A.
,
Xuan, J.
,
Wang, Y.
Journal:
Bioinformatics
Year:
2015
Language:
english
File:
PDF, 234 KB
Your tags:
english, 2015
16
GenPlay Multi-Genome, a tool to compare and analyze multiple human genomes in a graphical interface
Lajugie, J.
,
Fourel, N.
,
Bouhassira, E. E.
Journal:
Bioinformatics
Year:
2015
Language:
english
File:
PDF, 189 KB
Your tags:
english, 2015
17
SignalSpider: probabilistic pattern discovery on multiple normalized ChIP-Seq signal profiles
Wong, K.-C.
,
Li, Y.
,
Peng, C.
,
Zhang, Z.
Journal:
Bioinformatics
Year:
2015
Language:
english
File:
PDF, 733 KB
Your tags:
english, 2015
18
BigDataScript: a scripting language for data pipelines
Cingolani, P.
,
Sladek, R.
,
Blanchette, M.
Journal:
Bioinformatics
Year:
2015
Language:
english
File:
PDF, 339 KB
Your tags:
english, 2015
19
RCSB PDB Mobile: iOS and Android mobile apps to provide data access and visualization to the RCSB Protein Data Bank
Quinn, G. B.
,
Bi, C.
,
Christie, C. H.
,
Pang, K.
,
Prli , A.
,
Nakane, T.
,
Zardecki, C.
,
Voigt, M.
,
Berman, H. M.
,
Bourne, P. E.
,
Rose, P. W.
Journal:
Bioinformatics
Year:
2015
Language:
english
File:
PDF, 223 KB
Your tags:
english, 2015
20
Over-representation of correlation analysis (ORCA): a method for identifying associations between variable sets
Pomyen, Y.
,
Segura, M.
,
Ebbels, T. M. D.
,
Keun, H. C.
Journal:
Bioinformatics
Year:
2015
Language:
english
File:
PDF, 13.21 MB
Your tags:
english, 2015
21
Achievements and challenges in structural bioinformatics and computational biophysics
Samish, I.
,
Bourne, P. E.
,
Najmanovich, R. J.
Journal:
Bioinformatics
Year:
2015
Language:
english
File:
PDF, 389 KB
Your tags:
english, 2015
22
poRe: an R package for the visualization and analysis of nanopore sequencing data
Watson, M.
,
Thomson, M.
,
Risse, J.
,
Talbot, R.
,
Santoyo-Lopez, J.
,
Gharbi, K.
,
Blaxter, M.
Journal:
Bioinformatics
Year:
2015
Language:
english
File:
PDF, 154 KB
Your tags:
english, 2015
23
Prediction of Indel flanking regions in protein sequences using a variable-order Markov model
Al-Shatnawi, M.
,
Ahmad, M. O.
,
Swamy, M. N. S.
Journal:
Bioinformatics
Year:
2015
Language:
english
File:
PDF, 909 KB
Your tags:
english, 2015
24
PseKNC-General: a cross-platform package for generating various modes of pseudo nucleotide compositions
Chen, W.
,
Zhang, X.
,
Brooker, J.
,
Lin, H.
,
Zhang, L.
,
Chou, K.-C.
Journal:
Bioinformatics
Year:
2015
Language:
english
File:
PDF, 83 KB
Your tags:
english, 2015
25
Using population data for assessing next-generation sequencing performance
Houniet, D. T.
,
Rahman, T. J.
,
Al Turki, S.
,
Hurles, M. E.
,
Xu, Y.
,
Goodship, J.
,
Keavney, B.
,
Santibanez Koref, M.
Journal:
Bioinformatics
Year:
2015
Language:
english
File:
PDF, 361 KB
Your tags:
english, 2015
26
The Ensembl REST API: Ensembl Data for Any Language
Yates, A.
,
Beal, K.
,
Keenan, S.
,
McLaren, W.
,
Pignatelli, M.
,
Ritchie, G. R. S.
,
Ruffier, M.
,
Taylor, K.
,
Vullo, A.
,
Flicek, P.
Journal:
Bioinformatics
Year:
2015
Language:
english
File:
PDF, 89 KB
Your tags:
english, 2015
27
Estimation of GFP-tagged RNA numbers from temporal fluorescence intensity data
Hakkinen, A.
,
Ribeiro, A. S.
Journal:
Bioinformatics
Year:
2015
Language:
english
File:
PDF, 596 KB
Your tags:
english, 2015
28
BalestraWeb: efficient online evaluation of drug-target interactions
Cobanoglu, M. C.
,
Oltvai, Z. N.
,
Taylor, D. L.
,
Bahar, I.
Journal:
Bioinformatics
Year:
2015
Language:
english
File:
PDF, 244 KB
Your tags:
english, 2015
29
The GOBLET training portal: a global repository of bioinformatics training materials, courses and trainers
Corpas, M.
,
Jimenez, R. C.
,
Bongcam-Rudloff, E.
,
Budd, A.
,
Brazas, M. D.
,
Fernandes, P. L.
,
Gaeta, B.
,
van Gelder, C.
,
Korpelainen, E.
,
Lewitter, F.
,
McGrath, A.
,
MacLean, D.
,
Palagi, P. M.
,
Rother, K
Journal:
Bioinformatics
Year:
2015
Language:
english
File:
PDF, 159 KB
Your tags:
english, 2015
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