Volume 31; Issue 3

Main
Bioinformatics
Volume 31; Issue 3

Bioinformatics

Volume 31; Issue 3

1

SNP-SIG 2013: the state of the art of genomic variant interpretation

Bromberg, Y., Capriotti, E.

Journal:

Year:

2015

Language:

english

File:

PDF, 142 KB

english, 2015

2

MulRF: a software package for phylogenetic analysis using multi-copy gene trees

Chaudhary, R., Fernandez-Baca, D., Burleigh, J. G.

Journal:

Year:

2015

Language:

english

File:

PDF, 68 KB

english, 2015

3

Visual workflows for 13C-metabolic flux analysis

Noh, K., Droste, P., Wiechert, W.

Journal:

Year:

2015

Language:

english

File:

PDF, 835 KB

english, 2015

4

PDB-wide collection of binding data: current status of the PDBbind database

Liu, Z., Li, Y., Han, L., Li, J., Liu, J., Zhao, Z., Nie, W., Liu, Y., Wang, R.

Journal:

Year:

2015

Language:

english

File:

PDF, 1.02 MB

english, 2015

5

Rcount: simple and flexible RNA-Seq read counting

Schmid, M. W., Grossniklaus, U.

Journal:

Year:

2015

Language:

english

File:

PDF, 228 KB

english, 2015

6

SIST: stress-induced structural transitions in superhelical DNA

Zhabinskaya, D., Madden, S., Benham, C. J.

Journal:

Year:

2015

Language:

english

File:

PDF, 103 KB

english, 2015

7

An alternative approach to multiple testing for methylation QTL mapping reduces the proportion of falsely identified CpGs

Luijk, R., Goeman, J. J., Slagboom, E. P., Heijmans, B. T., van Zwet, E. W.

Journal:

Year:

2015

Language:

english

File:

PDF, 288 KB

english, 2015

8

NOVA: a software to analyze complexome profiling data

Giese, H., Ackermann, J., Heide, H., Bleier, L., Drose, S., Wittig, I., Brandt, U., Koch, I.

Journal:

Year:

2015

Language:

english

File:

PDF, 954 KB

english, 2015

9

LocalAli: an evolutionary-based local alignment approach to identify functionally conserved modules in multiple networks

Hu, J., Reinert, K.

Journal:

Year:

2015

Language:

english

File:

PDF, 255 KB

english, 2015

10

CompMap: a reference-based compression program to speed up read mapping to related reference sequences

Zhu, Z., Li, L., Zhang, Y., Yang, Y., Yang, X.

Journal:

Year:

2015

Language:

english

File:

PDF, 295 KB

english, 2015

11

VCF2Networks: applying genotype networks to single-nucleotide variants data

Dall'Olio, G. M., Vahdati, A. R., Bertranpetit, J., Wagner, A., Laayouni, H.

Journal:

Year:

2015

Language:

english

File:

PDF, 174 KB

english, 2015

12

Integrative data analysis indicates an intrinsic disordered domain character of Argonaute-binding motifs

Zielezinski, A., Karlowski, W. M.

Journal:

Year:

2015

Language:

english

File:

PDF, 929 KB

english, 2015

13

Log-odds sequence logos

Yu, Y.-K., Capra, J. A., Stojmirovi , A., Landsman, D., Altschul, S. F.

Journal:

Year:

2015

Language:

english

File:

PDF, 512 KB

english, 2015

14

Computing autocatalytic sets to unravel inconsistencies in metabolic network reconstructions

Schmidt, R., Waschina, S., Boettger-Schmidt, D., Kost, C., Kaleta, C.

Journal:

Year:

2015

Language:

english

File:

PDF, 364 KB

english, 2015

15

Inference of protein kinetics by stochastic modeling and simulation of fluorescence recovery after photobleaching experiments

Rapsomaniki, M. A., Cinquemani, E., Giakoumakis, N. N., Kotsantis, P., Lygeros, J., Lygerou, Z.

Journal:

Year:

2015

Language:

english

File:

PDF, 748 KB

english, 2015

16

ExomeAI: detection of recurrent allelic imbalance in tumors using whole-exome sequencing data

Nadaf, J., Majewski, J., Fahiminiya, S.

Journal:

Year:

2015

Language:

english

File:

PDF, 93 KB

english, 2015

17

PhosphoPICK: modelling cellular context to map kinase-substrate phosphorylation events

Patrick, R., Le Cao, K.-A., Kobe, B., Boden, M.

Journal:

Year:

2015

Language:

english

File:

PDF, 146 KB

english, 2015

18

Pooled assembly of marine metagenomic datasets: enriching annotation through chimerism

Magasin, J. D., Gerloff, D. L.

Journal:

Year:

2015

Language:

english

File:

PDF, 1008 KB

english, 2015

19

Deviance residuals-based sparse PLS and sparse kernel PLS regression for censored data

Bastien, P., Bertrand, F., Meyer, N., Maumy-Bertrand, M.

Journal:

Year:

2015

Language:

english

File:

PDF, 712 KB

english, 2015

20

Tabhu: tools for antibody humanization

Olimpieri, P. P., Marcatili, P., Tramontano, A.

Journal:

Year:

2015

Language:

english

File:

PDF, 58 KB

english, 2015

21

SNPsnap: a Web-based tool for identification and annotation of matched SNPs

Pers, T. H., Timshel, P., Hirschhorn, J. N.

Journal:

Year:

2015

Language:

english

File:

PDF, 180 KB

english, 2015

22

GeneNet Toolbox for MATLAB: a flexible platform for the analysis of gene connectivity in biological networks

Taylor, A., Steinberg, J., Andrews, T. S., Webber, C.

Journal:

Year:

2015

Language:

english

File:

PDF, 95 KB

english, 2015

23

WhopGenome: high-speed access to whole-genome variation and sequence data in R

Wittelsburger, U., Pfeifer, B., Lercher, M. J.

Journal:

Year:

2015

Language:

english

File:

PDF, 90 KB

english, 2015

24

Using the plurality of codon positions to identify deleterious variants in human exomes

Subramanian, S.

Journal:

Year:

2015

Language:

english

File:

PDF, 326 KB

english, 2015

25

FungiFun2: a comprehensive online resource for systematic analysis of gene lists from fungal species

Priebe, S., Kreisel, C., Horn, F., Guthke, R., Linde, J.

Journal:

Year:

2015

Language:

english

File:

PDF, 224 KB

english, 2015

26

OrthoInspector 2.0: Software and database updates

Linard, B., Allot, A., Schneider, R., Morel, C., Ripp, R., Bigler, M., Thompson, J. D., Poch, O., Lecompte, O.

Journal:

Year:

2015

Language:

english

File:

PDF, 191 KB

english, 2015

27

A stochastic automaton model for simulating kinesin processivity

Khataee, H., Liew, A. W.-C.

Journal:

Year:

2015

Language:

english

File:

PDF, 457 KB

english, 2015

28

DupliPHY-Web: a web server for DupliPHY and DupliPHY-ML

Ames, R. M., Lovell, S. C.

Journal:

Year:

2015

Language:

english

File:

PDF, 167 KB

english, 2015

29

Genome measures used for quality control are dependent on gene function and ancestry

Wang, J., Raskin, L., Samuels, D. C., Shyr, Y., Guo, Y.

Journal:

Year:

2015

Language:

english

File:

PDF, 154 KB

english, 2015

30

Novel function discovery with GeneMANIA: a new integrated resource for gene function prediction in Escherichia coli

Vlasblom, J., Zuberi, K., Rodriguez, H., Arnold, R., Gagarinova, A., Deineko, V., Kumar, A., Leung, E., Rizzolo, K., Samanfar, B., Chang, L., Phanse, S., Golshani, A., Greenblatt, J. F., Houry, W. A.,

Journal:

Year:

2015

Language:

english

File:

PDF, 338 KB

english, 2015

31

The RNA shapes studio

Janssen, S., Giegerich, R.

Journal:

Year:

2015

Language:

english

File:

PDF, 689 KB

english, 2015