Volume 32; Issue 6

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Bioinformatics
Volume 32; Issue 6

Bioinformatics

Volume 32; Issue 6

1

CDSfold: an algorithm for designing a protein-coding sequence with the most stable secondary structure

Terai, Goro, Kamegai, Satoshi, Asai, Kiyoshi

Journal:

Year:

2016

Language:

english

File:

PDF, 364 KB

english, 2016

2

Uncovering multiloci-ordering by algebraic property of Laplacian matrix and its Fiedler vector

Cheon, Mookyung, Kim, Choongrak, Chang, Iksoo

Journal:

Year:

2016

Language:

english

File:

PDF, 913 KB

english, 2016

3

Optimal design of gene knockout experiments for gene regulatory network inference

Ud-Dean, S. M. Minhaz, Gunawan, Rudiyanto

Journal:

Year:

2016

Language:

english

File:

PDF, 691 KB

english, 2016

4

KMAD: knowledge-based multiple sequence alignment for intrinsically disordered proteins

Lange, Joanna, Wyrwicz, Lucjan S., Vriend, Gert

Journal:

Year:

2016

File:

PDF, 668 KB

2016

5

Analyzing synergistic and non-synergistic interactions in signalling pathways using Boolean Nested Effect Models

Pirkl, Martin, Hand, Elisabeth, Kube, Dieter, Spang, Rainer

Journal:

Year:

2016

File:

PDF, 460 KB

2016

6

JSpeciesWS: a web server for prokaryotic species circumscription based on pairwise genome comparison

Richter, Michael, Rosselló-Móra, Ramon, Oliver Glöckner, Frank, Peplies, Jörg

Journal:

Year:

2016

Language:

english

File:

PDF, 77 KB

english, 2016

7

Annotation of rule-based models with formal semantics to enable creation, analysis, reuse and visualization

Misirli, Goksel, Cavaliere, Matteo, Waites, William, Pocock, Matthew, Madsen, Curtis, Gilfellon, Owen, Honorato-Zimmer, Ricardo, Zuliani, Paolo, Danos, Vincent, Wipat, Anil

Journal:

Year:

2016

Language:

english

File:

PDF, 1.07 MB

english, 2016

8

KMAD: knowledge-based multiple sequence alignment for intrinsically disordered proteins

Lange, Joanna, Wyrwicz, Lucjan S., Vriend, Gert

Journal:

Year:

2016

Language:

english

File:

PDF, 668 KB

english, 2016

9

Analyzing synergistic and non-synergistic interactions in signalling pathways using Boolean Nested Effect Models

Pirkl, Martin, Hand, Elisabeth, Kube, Dieter, Spang, Rainer

Journal:

Year:

2016

Language:

english

File:

PDF, 460 KB

english, 2016

10

BioPartsBuilder: a synthetic biology tool for combinatorial assembly of biological parts

Yang, Kun, Stracquadanio, Giovanni, Luo, Jingchuan, Boeke, Jef D., Bader, Joel S.

Journal:

Year:

2016

Language:

english

File:

PDF, 168 KB

english, 2016

11

CHRONOS : a time-varying method for microRNA-mediated subpathway enrichment analysis

Vrahatis, Aristidis G., Dimitrakopoulou, Konstantina, Balomenos, Panos, Tsakalidis, Athanasios K., Bezerianos, Anastasios

Journal:

Year:

2016

Language:

english

File:

PDF, 923 KB

english, 2016

12

PAPA: a flexible tool for identifying pleiotropic pathways using genome-wide association study summaries

Wen, Yan, Wang, Wenyu, Guo, Xiong, Zhang, Feng

Journal:

Year:

2016

Language:

english

File:

PDF, 96 KB

english, 2016

13

LocusExplorer: a user-friendly tool for integrated visualization of human genetic association data and biological annotations

Dadaev, Tokhir, Leongamornlert, Daniel A., Saunders, Edward J., Eeles, Rosalind, Kote-Jarai, Zsofia

Journal:

Year:

2016

Language:

english

File:

PDF, 157 KB

english, 2016