Volume 3

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MethodsX
Volume 3

MethodsX

Volume 3

1

NGS-based deep bisulfite sequencing

Lee, Suman, Kim, Joomyeong

Journal:

Year:

2016

Language:

english

File:

PDF, 1016 KB

english, 2016

2

Aqueous based reflux method for green synthesis of nanostructures: Application in CZTS synthesis

Aditha, Sai Kiran, Kurdekar, Aditya Dileep, Chunduri, L.A. Avinash, Patnaik, Sandeep, Kamisetti, Venkataramaniah

Journal:

Year:

2016

Language:

english

File:

PDF, 1.03 MB

english, 2016

3

Analysis of hair cortisol levels in captive chimpanzees: Effect of various methods on cortisol stability and variability

Yamanashi, Yumi, Teramoto, Migaku, Morimura, Naruki, Hirata, Satoshi, Suzuki, Juri, Hayashi, Misato, Kinoshita, Kodzue, Murayama, Miho, Idani, Gen’ichi

Journal:

Year:

2016

Language:

english

File:

PDF, 373 KB

english, 2016

4

Optimization of an in vitro human blood–brain barrier model: Application to blood monocyte transmigration assays

Paradis, Alexandre, Leblanc, David, Dumais, Nancy

Journal:

Year:

2016

Language:

english

File:

PDF, 918 KB

english, 2016

5

A quantitative PCR approach for quantification of functional genes involved in the degradation of polycyclic aromatic hydrocarbons in contaminated soils

Shahsavari, Esmaeil, Aburto-Medina, Arturo, Taha, Mohamed, Ball, Andrew S.

Journal:

Year:

2016

Language:

english

File:

PDF, 394 KB

english, 2016

6

Determination of ochratoxin A in pig tissues using enzymatic digestion coupled with high-performance liquid chromatography with a fluorescence detector

Giacomo, Luci, Michele, Vanni, Guido, Ferruzzi, Danilo, Mani, Luigi, Intorre, Valentina, Meucci

Journal:

Year:

2016

Language:

english

File:

PDF, 319 KB

english, 2016

7

Nanosculpt: A methodology for generating complex realistic configurations for atomistic simulations

Prakash, A., Hummel, M., Schmauder, S., Bitzek, E.

Journal:

Year:

2016

Language:

english

File:

PDF, 2.21 MB

english, 2016

8

Voxelization algorithms for geospatial applications

Nourian, Pirouz, Gonçalves, Romulo, Zlatanova, Sisi, Ohori, Ken Arroyo, Vu Vo, Anh

Journal:

Year:

2016

Language:

english

File:

PDF, 3.35 MB

english, 2016

9

Simple, fast, and accurate methodology for quantitative analysis using Fourier transform infrared spectroscopy, with bio-hybrid fuel cell examples

Mackie, David M., Jahnke, Justin P., Benyamin, Marcus S., Sumner, James J.

Journal:

Year:

2016

Language:

english

File:

PDF, 899 KB

english, 2016

10

An improved method for measuring metaldehyde in surface water using liquid chromatography tandem mass spectrometry

Schumacher, Melanie, Castle, Glenn, Gravell, Anthony, Mills, Graham A., Fones, Gary R.

Journal:

Year:

2016

Language:

english

File:

PDF, 475 KB

english, 2016

11

Computer-assisted image processing to detect spores from the fungus Pandora neoaphidis

Korsnes, Reinert, Westrum, Karin, Fløistad, Erling, Klingen, Ingeborg

Journal:

Year:

2016

Language:

english

File:

PDF, 1.38 MB

english, 2016

12

Determination of Sb(III) and Sb(V) by HPLC—Online isotopic dilution—ICP MS

Fontanella, Maria Chiara, Beone, Gian Maria

Journal:

Year:

2016

Language:

english

File:

PDF, 913 KB

english, 2016

13

SegWay: A simple framework for unsupervised sleep segmentation in experimental EEG recordings

Yaghouby, Farid, Sunderam, Sridhar

Journal:

Year:

2016

Language:

english

File:

PDF, 3.42 MB

english, 2016

14

Determining wave direction using curvature parameters

de Queiroz, Eduardo Vitarelli, de Carvalho, João Luiz Baptista

Journal:

Year:

2016

Language:

english

File:

PDF, 793 KB

english, 2016

15

Ultra-high-pressure liquid chromatography tandem mass spectrometry method for the determination of 9 organophosphate flame retardants in water samples

Lorenzo, María, Campo, Julián, Picó, Yolanda

Journal:

Year:

2016

Language:

english

File:

PDF, 1.04 MB

english, 2016

16

Numerical study of the shape parameter dependence of the local radial point interpolation method in linear elasticity

Moussaoui, Ahmed, Bouziane, Touria

Journal:

Year:

2016

Language:

english

File:

PDF, 835 KB

english, 2016

17

Corrigendum to “Detection of BRAF mutations from solid tumors using Tumorplex™ technology” [MethodsX 2 (2015), 316–322]

Yo, Jacob, Hay, Katie S.L., Vinayagamoorthy, Dilanthi, Maryanski, Danielle, Carter, Mark, Wiegel, Joseph, Vinayagamoorthy, Thuraiayah

Journal:

Year:

2016

Language:

english

File:

PDF, 158 KB

english, 2016

18

Fabrication of molecular tension probes

Kim, Sung Bae, Fujii, Rika

Journal:

Year:

2016

Language:

english

File:

PDF, 744 KB

english, 2016

19

Nanodisc-Tm: Rapid functional assessment of nanodisc reconstituted membrane proteins by CPM assay

Ashok, Yashwanth, Jaakola, Veli-Pekka

Journal:

Year:

2016

Language:

english

File:

PDF, 407 KB

english, 2016

20

A new approach to assessment of the left ventricle

Poppe, Katrina K., Doughty, Rob N., Whalley, Gillian A., Triggs, Christopher M.

Journal:

Year:

2016

Language:

english

File:

PDF, 398 KB

english, 2016

21

Universal method to determine acidic licit and illicit drugs and personal care products in water by liquid chromatography quadrupole time-of-flight

Andrés-Costa, María Jesús, Carmona, Eric, Picó, Yolanda

Journal:

Year:

2016

Language:

english

File:

PDF, 895 KB

english, 2016

22

A data sheet for the simultaneous assessment of dual radioactive tracer uptake in the heart

Journal:

Year:

2016

Language:

english

File:

PDF, 493 KB

english, 2016

23

Transfection of insect cell in suspension for efficient baculovirus generation

Roest, S., Kapps-Fouthier, S., Klopp, J., Rieffel, S., Gerhartz, B., Shrestha, B.

Journal:

Year:

2016

Language:

english

File:

PDF, 918 KB

english, 2016

24

Analytical methodologies based on LC–MS/MS for monitoring selected emerging compounds in liquid and solid phases of the sewage sludge

Boix, C., Ibáñez, M., Fabregat-Safont, D., Morales, E., Pastor, L., Sancho, J.V., Sánchez-Ramírez, J.E., Hernández, F.

Journal:

Year:

2016

Language:

english

File:

PDF, 431 KB

english, 2016

25

A highly versatile and easily configurable system for plant electrophysiology

Gunsé, Benet, Poschenrieder, Charlotte, Rankl, Simone, Schröeder, Peter, Rodrigo-Moreno, Ana, Barceló, Juan

Journal:

Year:

2016

Language:

english

File:

PDF, 2.71 MB

english, 2016

26

AZDAST the new horizon in antimicrobial synergism detection

Ziaei-Darounkalaei, Navid, Ameri, Mehrdad, Zahraei-Salehi, Taghi, Ziaei-Darounkalaei, Omid, Mohajer-Tabrizi, Tahereh, Bornaei, Lotfollah

Journal:

Year:

2016

Language:

english

File:

PDF, 743 KB

english, 2016

27

An LC–MS/MS method for the determination of budesonide and 16α-hydroxyprednisolone in dog plasma

Gazzotti, Teresa, Barbarossa, Andrea, Zironi, Elisa, Roncada, Paola, Pietra, Marco, Pagliuca, Giampiero

Journal:

Year:

2016

Language:

english

File:

PDF, 501 KB

english, 2016

28

Comparison of rapid solvent extraction systems for the GC–MS/MS characterization of polycyclic aromatic hydrocarbons in aged, contaminated soil

Haleyur, Nagalakshmi, Shahsavari, Esmaeil, Mansur, Abdulatif A., Koshlaf, Eman, Morrison, Paul D., Osborn, A. Mark, Ball, Andrew S.

Journal:

Year:

2016

Language:

english

File:

PDF, 393 KB

english, 2016

29

Integrated modelling of crop production and nitrate leaching with the Daisy model

Manevski, Kiril, Børgesen, Christen D., Li, Xiaoxin, Andersen, Mathias N., Abrahamsen, Per, Hu, Chunsheng, Hansen, Søren

Journal:

Year:

2016

Language:

english

File:

PDF, 1.51 MB

english, 2016

30

Isolation and analysis of sugar nucleotides using solid phase extraction and fluorophore assisted carbohydrate electrophoresis

Barnes, Jarrod, Tian, Liping, Loftis, Jacqueline, Hiznay, James, Comhair, Suzy, Lauer, Mark, Dweik, Raed

Journal:

Year:

2016

Language:

english

File:

PDF, 894 KB

english, 2016

31

‘nparACT’ package for R: A free software tool for the non-parametric analysis of actigraphy data

Blume, Christine, Santhi, Nayantara, Schabus, Manuel

Journal:

Year:

2016

Language:

english

File:

PDF, 418 KB

english, 2016

32

A Discounted Cash Flow variant to detect the optimal amount of additional burdens in Public-Private Partnership transactions

Copiello, Sergio

Journal:

Year:

2016

Language:

english

File:

PDF, 1.07 MB

english, 2016

33

Production and purification of a soluble hydrogenase from Ralstonia eutropha H16 for potential hydrogen fuel cell applications

Jugder, Bat-Erdene, Lebhar, Helene, Aguey-Zinsou, Kondo-Francois, Marquis, Christopher P.

Journal:

Year:

2016

Language:

english

File:

PDF, 850 KB

english, 2016

34

Rotation axis demultiplexer enabling simultaneous computed tomography of multiple samples

Trtik, Pavel, Geiger, Fabian, Hovind, Jan, Lang, Udo, Lehmann, Eberhard, Vontobel, Peter, Peetermans, Steven

Journal:

Year:

2016

Language:

english

File:

PDF, 1006 KB

english, 2016

35

Detection of phosphorylated Akt and MAPK in cell culture assays

Molgaard, Simon, Ulrichsen, Maj, Olsen, Ditte, Glerup, Simon

Journal:

Year:

2016

Language:

english

File:

PDF, 2.91 MB

english, 2016

36

A simple and rapid method for combining fluorescent in situ RNA hybridization (FISH) and immunofluorescence in the C. elegans germline

Yoon, Dong Suk, Pendergrass, DeQwon L., Lee, Myon-Hee

Journal:

Year:

2016

Language:

english

File:

PDF, 1.14 MB

english, 2016

37

A simple and effective heat induced antigen retrieval method

K.R., Vinod, Jones, Denny, Udupa, Venkatesha

Journal:

Year:

2016

Language:

english

File:

PDF, 1.27 MB

english, 2016

38

Determination of dimensions of exfoliating materials in aqueous suspensions

Karpovich, Anastasia L., Vlasova, Maria F., Sapronova, Natalya I., Sukharev, Valentin S., Ivanov, Victor V.

Journal:

Year:

2016

Language:

english

File:

PDF, 482 KB

english, 2016

39

The optimal algorithm for Multi-source RS image fusion

Fu, Wei, Huang, Shui-guang, Li, Zeng-shun, Shen, Hao, Li, Jun-shuai, Wang, Peng-yuan

Journal:

Year:

2016

Language:

english

File:

PDF, 1.20 MB

english, 2016

40

Invert emulsion: Method of preparation and application as proper formulation of entomopathogenic fungi

Batta, Yacoub A.

Journal:

Year:

2016

Language:

english

File:

PDF, 303 KB

english, 2016

41

BDA: A novel method for identifying defects in body-centered cubic crystals

Möller, Johannes J., Bitzek, Erik

Journal:

Year:

2016

Language:

english

File:

PDF, 1.93 MB

english, 2016

42

Design and construction of a low-cost nose poke system for rodents

Rizzi, Giorgio, Lodge, Meredith E., Tan, Kelly R.

Journal:

Year:

2016

Language:

english

File:

PDF, 1.53 MB

english, 2016

43

Nanometric resolution magnetic resonance imaging methods for mapping functional activity in neuronal networks

Boretti, Albert, Castelletto, Stefania

Journal:

Year:

2016

Language:

english

File:

PDF, 573 KB

english, 2016

44

Touch-free measurement of body temperature using close-up thermography of the ocular surface

Vogel, Benjamin, Wagner, Heike, Gmoser, Johanna, Wörner, Anja, Löschberger, Anna, Peters, Laura, Frey, Anna, Hofmann, Ulrich, Frantz, Stefan

Journal:

Year:

2016

Language:

english

File:

PDF, 1.37 MB

english, 2016

45

Chromosomal microarray analysis, or comparative genomic hybridization: A high throughput approach

Haeri, Mohammad, Gelowani, Violet, Beaudet, Arthur L.

Journal:

Year:

2016

Language:

english

File:

PDF, 1002 KB

english, 2016

46

Instrumentation to study myofibril mechanics from static to artificial simulations of cardiac cycle

Vikhorev, Petr G., Ferenczi, Michael A., Marston, Steven B.

Journal:

Year:

2016

Language:

english

File:

PDF, 2.07 MB

english, 2016

47

Preparation of purified perikaryal and synaptosomal mitochondrial fractions from relatively small hypothalamic brain samples

Kiss, David S., Toth, Istvan, Jocsak, Gergely, Sterczer, Agnes, Bartha, Tibor, Frenyo, Laszlo V., Zsarnovszky, Attila

Journal:

Year:

2016

Language:

english

File:

PDF, 1.29 MB

english, 2016

48

A simple, low cost GC/MS method for the sub-nanogram per litre measurement of organotins in coastal water

Cole, Russell F., Mills, Graham A., Bakir, Adil, Townsend, Ian, Gravell, Anthony, Fones, Gary R.

Journal:

Year:

2016

Language:

english

File:

PDF, 404 KB

english, 2016

49

A genetically encoded bioluminescent indicator for illuminating proinflammatory cytokines

Kim, Sung Bae, Ozawa, Takeaki, Umezawa, Yoshio

Journal:

Year:

2016

Language:

english

File:

PDF, 1.16 MB

english, 2016

50

Use of cross-reactivity immunoassay to orient insulin replacement in diabetic patients with high levels of insulin antibodies

Cardoso Landaburu, Alejandro, Pomares, María, Avalos, Alfredo, Lapertosa, Silvia, Frechtel, Gustavo, Poskus, Edgardo

Journal:

Year:

2016

Language:

english

File:

PDF, 251 KB

english, 2016

51

A landscape-based cluster analysis using recursive search instead of a threshold parameter

Gladwin, Thomas E., Vink, Matthijs, Mars, Roger B.

Journal:

Year:

2016

Language:

english

File:

PDF, 494 KB

english, 2016

52

A method to implement the reservoir-wave hypothesis using phase-contrast magnetic resonance imaging

Gray, Robert D.M., Parker, Kim H., Quail, Michael A., Taylor, Andrew M., Biglino, Giovanni

Journal:

Year:

2016

Language:

english

File:

PDF, 458 KB

english, 2016

53

A re-usable wave bioreactor for protein production in insect cells

Scholz, J., Suppmann, S.

Journal:

Year:

2016

Language:

english

File:

PDF, 589 KB

english, 2016

54

Bquant – Novel script for batch quantification of LCMS data

Rožman, Marko, Petrović, Mira

Journal:

Year:

2016

Language:

english

File:

PDF, 369 KB

english, 2016

55

Vacuum system upgrade for extended Q-range small-angle neutron scattering diffractometer (EQ-SANS) at SNS

Stone, Christopher, Williams, Derrick, Price, Jeremy

Journal:

Year:

2016

Language:

english

File:

PDF, 1.50 MB

english, 2016

56

100Hz neutron radiography at the BOA beamline using a parabolic focussing guide

Trtik, Pavel, Morgano, Manuel, Bentz, Roman, Lehmann, Eberhard

Journal:

Year:

2016

Language:

english

File:

PDF, 772 KB

english, 2016

57

A filtering method to reveal crystalline patterns from atom probe microscopy desorption maps

Journal:

Year:

2016

Language:

english

File:

PDF, 2.40 MB

english, 2016

58

A simple and effective method for ultrastructural analysis of mitosis in Drosophila S2 cells

Strunov, Anton, Boldyreva, Lidiya V., Pavlova, Gera A., Pindyurin, Alexey V., Gatti, Maurizio, Kiseleva, Elena

Journal:

Year:

2016

Language:

english

File:

PDF, 4.30 MB

english, 2016

59

So much data, so little time: Using sequential data analysis to monitor behavioral changes

Walker, Tywanquila

Journal:

Year:

2016

Language:

english

File:

PDF, 624 KB

english, 2016

60

Automating hESC differentiation with 3D printing and legacy liquid handling solutions

Zluhan, Eric, Kelly, Kathleen, LeClair, Nick, Wortel, Danique, Moody, Kelsey

Journal:

Year:

2016

Language:

english

File:

PDF, 1.55 MB

english, 2016

61

A computationally efficient algorithm for fitting ion channel parameters

Teed, Zachary R., Silva, Jonathan R.

Journal:

Year:

2016

Language:

english

File:

PDF, 1.86 MB

english, 2016

62

LongQt: A cardiac electrophysiology simulation platform

Onal, Birce, Gratz, Daniel, Hund, Thomas

Journal:

Year:

2016

Language:

english

File:

PDF, 1.85 MB

english, 2016

63

Fabrication and characterization of carbon-backed thin 208Pb targets

Thakur, Meenu, Dubey, R., Abhilash, S.R, Behera, B.R., Mohanty, B.P., Kabiraj, D., Ojha, Sunil, Duggal, Heena

Journal:

Year:

2016

Language:

english

File:

PDF, 861 KB

english, 2016