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Volume 3; Issue 1
Main
BMC Bioinformatics
Volume 3; Issue 1
BMC Bioinformatics
Volume 3; Issue 1
1
Identification and characterization of subfamily-specific signatures in a large protein superfamily by a hidden Markov model approach
Kevin Truong
,
Mitsuhiko Ikura
Journal:
BMC Bioinformatics
Year:
2002
Language:
english
File:
PDF, 845 KB
Your tags:
english, 2002
2
RNA:(guanine-N2) methyltransferases RsmC/RsmD and their homologs revisited – bioinformatic analysis and prediction of the active site based on the uncharacterized Mj0882 protein structure
Janusz M Bujnicki
,
Leszek Rychlewski
Journal:
BMC Bioinformatics
Year:
2002
Language:
english
File:
PDF, 874 KB
Your tags:
english, 2002
3
Homology Induction: the use of machine learning to improve sequence similarity searches
Andreas Karwath
,
Ross D King
Journal:
BMC Bioinformatics
Year:
2002
Language:
english
File:
PDF, 383 KB
Your tags:
english, 2002
4
CoreGenes: A computational tool for identifying and cataloging "core" genes in a set of small genomes
Nikhat Zafar
,
Raja Mazumder
,
Donald Seto
Journal:
BMC Bioinformatics
Year:
2002
Language:
english
File:
PDF, 500 KB
Your tags:
english, 2002
5
NBLAST: a cluster variant of BLAST for NxN comparisons
Michel Dumontier
,
Christopher WV Hogue
Journal:
BMC Bioinformatics
Year:
2002
Language:
english
File:
PDF, 206 KB
Your tags:
english, 2002
6
RIO: Analyzing proteomes by automated phylogenomics using resampled inference of orthologs
Christian M Zmasek
,
Sean R Eddy
Journal:
BMC Bioinformatics
Year:
2002
Language:
english
File:
PDF, 461 KB
Your tags:
english, 2002
7
The Comparative RNA Web (CRW) Site: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs: Correction
Jamie J Cannone
,
Sankar Subramanian
,
Murray N Schnare
,
James R Collett
,
Lisa M D'Souza
,
Yushi Du
,
Brian Feng
,
Nan Lin
,
Lakshmi V Madabusi
,
Kirsten M Müller
,
Nupur Pande
,
Zhidi Shang
,
Nan Yu
,
Robin R G
Journal:
BMC Bioinformatics
Year:
2002
Language:
english
File:
PDF, 136 KB
Your tags:
english, 2002
8
Identifying functional relationships among human genes by systematic analysis of biological literature
Yong-Chuan Tao
,
Rudolph L Leibel
Journal:
BMC Bioinformatics
Year:
2002
Language:
english
File:
PDF, 304 KB
Your tags:
english, 2002
9
The limit fold change model: A practical approach for selecting differentially expressed genes from microarray data
David M Mutch
,
Alvin Berger
,
Robert Mansourian
,
Andreas Rytz
,
Matthew-Alan Roberts
Journal:
BMC Bioinformatics
Year:
2002
Language:
english
File:
PDF, 460 KB
Your tags:
english, 2002
10
A memory-efficient dynamic programming algorithm for optimal alignment of a sequence to an RNA secondary structure
Sean R Eddy
Journal:
BMC Bioinformatics
Year:
2002
Language:
english
File:
PDF, 434 KB
Your tags:
english, 2002
11
Visualizing the genome: techniques for presenting human genome data and annotations
Ann E Loraine
,
Gregg A Helt
Journal:
BMC Bioinformatics
Year:
2002
Language:
english
File:
PDF, 533 KB
Your tags:
english, 2002
12
The Comparative RNA Web (CRW) Site: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs
Jamie J Cannone
,
Sankar Subramanian
,
Murray N Schnare
,
James R Collett
,
Lisa M D'Souza
,
Yushi Du
,
Brian Feng
,
Nan Lin
,
Lakshmi V Madabusi
,
Kirsten M Müller
,
Nupur Pande
,
Zhidi Shang
,
Nan Yu
,
Robin R G
Journal:
BMC Bioinformatics
Year:
2002
Language:
english
File:
PDF, 1.09 MB
Your tags:
english, 2002
13
Kangaroo – A pattern-matching program for biological sequences
Doron Betel
,
Christopher WV Hogue
Journal:
BMC Bioinformatics
Year:
2002
Language:
english
File:
PDF, 258 KB
Your tags:
english, 2002
14
The SGS3 protein involved in PTGS finds a family
Alex Bateman
Journal:
BMC Bioinformatics
Year:
2002
Language:
english
File:
PDF, 272 KB
Your tags:
english, 2002
15
Microarray results: how accurate are they?
Ravi Kothapalli
,
Sean J Yoder
,
Shrikant Mane
,
Thomas P Loughran
Journal:
BMC Bioinformatics
Year:
2002
Language:
english
File:
PDF, 632 KB
Your tags:
english, 2002
16
Computational method for reducing variance with Affymetrix microarrays
Stephen Welle
,
Andrew I Brooks
,
Charles A Thornton
Journal:
BMC Bioinformatics
Year:
2002
Language:
english
File:
PDF, 2.22 MB
Your tags:
english, 2002
17
The functional importance of disease-associated mutation
Sean D Mooney
,
Teri E Klein
Journal:
BMC Bioinformatics
Year:
2002
Language:
english
File:
PDF, 246 KB
Your tags:
english, 2002
18
Prediction of MHC class I binding peptides, using SVMHC
Pierre Dönnes
,
Arne Elofsson
Journal:
BMC Bioinformatics
Year:
2002
Language:
english
File:
PDF, 296 KB
Your tags:
english, 2002
19
Expression profiling of human renal carcinomas with functional taxonomic analysis
Michael A Gieseg
,
Theresa Cody
,
Michael Z Man
,
Steven J Madore
,
Mark A Rubin
,
Eric P Kaldjian
Journal:
BMC Bioinformatics
Year:
2002
Language:
english
File:
PDF, 821 KB
Your tags:
english, 2002
20
Oliz, a suite of Perl scripts that assist in the design of microarrays using 50mer oligonucleotides from the 3' untranslated region
Hao Chen
,
Burt M Sharp
Journal:
BMC Bioinformatics
Year:
2002
Language:
english
File:
PDF, 326 KB
Your tags:
english, 2002
21
Efficient Boolean implementation of universal sequence maps (bUSM)
John Schwacke
,
Jonas S Almeida
Journal:
BMC Bioinformatics
Year:
2002
Language:
english
File:
PDF, 378 KB
Your tags:
english, 2002
22
Simulation of DNA array hybridization experiments and evaluation of critical parameters during subsequent image and data analysis
Christoph K Wierling
,
Matthias Steinfath
,
Thorsten Elge
,
Steffen Schulze-Kremer
,
Pia Aanstad
,
Matthew Clark
,
Hans Lehrach
,
Ralf Herwig
Journal:
BMC Bioinformatics
Year:
2002
Language:
english
File:
PDF, 988 KB
Your tags:
english, 2002
23
Match-Only Integral Distribution (MOID) Algorithm for high-density oligonucleotide array analysis
Yingyao Zhou
,
Ruben Abagyan
Journal:
BMC Bioinformatics
Year:
2002
Language:
english
File:
PDF, 439 KB
Your tags:
english, 2002
24
Computational detection of genomiccis-regulatory modules applied to body patterning in the earlyDrosophilaembryo
Nikolaus Rajewsky
,
Massimo Vergassola
,
Ulrike Gaul
,
Eric D Siggia
Journal:
BMC Bioinformatics
Year:
2002
Language:
english
File:
PDF, 331 KB
Your tags:
english, 2002
25
Making sense of EST sequences by CLOBBing them
John Parkinson
,
David B Guiliano
,
Mark Blaxter
Journal:
BMC Bioinformatics
Year:
2002
Language:
english
File:
PDF, 293 KB
Your tags:
english, 2002
26
SeqHound: biological sequence and structure database as a platform for bioinformatics research
Katerina Michalickova
,
Gary D Bader
,
Michel Dumontier
,
Hao Lieu
,
Doron Betel
,
Ruth Isserlin
,
Christopher WV Hogue
Journal:
BMC Bioinformatics
Year:
2002
Language:
english
File:
PDF, 342 KB
Your tags:
english, 2002
27
Development and production of an oligonucleotide MuscleChip: use for validation of ambiguous ESTs
Rehannah HA Borup
,
Stefano Toppo
,
Yi-Wen Chen
,
Tanya M Teslovich
,
Gerolamo Lanfranchi
,
Giorgio Valle
,
Eric P Hoffman
Journal:
BMC Bioinformatics
Year:
2002
Language:
english
File:
PDF, 550 KB
Your tags:
english, 2002
28
Automated modelling of signal transduction networks
Martin Steffen
,
Allegra Petti
,
John Aach
,
Patrik D'haeseleer
,
George Church
Journal:
BMC Bioinformatics
Year:
2002
Language:
english
File:
PDF, 862 KB
Your tags:
english, 2002
29
FunSpec: a web-based cluster interpreter for yeast
Mark D Robinson
,
Jörg Grigull
,
Naveed Mohammad
,
Timothy R Hughes
Journal:
BMC Bioinformatics
Year:
2002
Language:
english
File:
PDF, 953 KB
Your tags:
english, 2002
30
Clustering of the SOM easily reveals distinct gene expression patterns: results of a reanalysis of lymphoma study
Junbai Wang
,
Jan Delabie
,
Hans Christian Aasheim
,
Erlend Smeland
,
Ola Myklebost
Journal:
BMC Bioinformatics
Year:
2002
Language:
english
File:
PDF, 868 KB
Your tags:
english, 2002
31
Total sequence decomposition distinguishes functional modules, "molegos" in apurinic/apyrimidinic endonucleases
Catherine H Schein
,
Numan Özgün
,
Tadahide Izumi
,
Werner Braun
Journal:
BMC Bioinformatics
Year:
2002
Language:
english
File:
PDF, 1.36 MB
Your tags:
english, 2002
32
Quantifying robustness of biochemical network models
Lan Ma
,
Pablo A Iglesias
Journal:
BMC Bioinformatics
Year:
2002
Language:
english
File:
PDF, 443 KB
Your tags:
english, 2002
33
Species-specific protein sequence and fold optimizations
Michel Dumontier
,
Katerina Michalickova
,
Christopher WV Hogue
Journal:
BMC Bioinformatics
Year:
2002
Language:
english
File:
PDF, 506 KB
Your tags:
english, 2002
34
Sources of variability and effect of experimental approach on expression profiling data interpretation
Marina Bakay
,
Yi-Wen Chen
,
Rehannah Borup
,
Po Zhao
,
Kanneboyina Nagaraju
,
Eric P Hoffman
Journal:
BMC Bioinformatics
Year:
2002
Language:
english
File:
PDF, 759 KB
Your tags:
english, 2002
35
ORFer – retrieval of protein sequences and open reading frames from GenBank and storage into relational databases or text files
Konrad Büssow
,
Steve Hoffmann
,
Volker Sievert
Journal:
BMC Bioinformatics
Year:
2002
Language:
english
File:
PDF, 229 KB
Your tags:
english, 2002
36
Re-annotation of genome microbial CoDing-Sequences: finding new genes and inaccurately annotated genes
Stéphanie Bocs
,
Antoine Danchin
,
Claudine Médigue
Journal:
BMC Bioinformatics
Year:
2002
Language:
english
File:
PDF, 441 KB
Your tags:
english, 2002
37
Universal sequence map (USM) of arbitrary discrete sequences
Jonas S Almeida
,
Susana Vinga
Journal:
BMC Bioinformatics
Year:
2002
Language:
english
File:
PDF, 849 KB
Your tags:
english, 2002
38
Correlating overrepresented upstream motifs to gene expression: a computational approach to regulatory element discovery in eukaryotes
Michele Caselle
,
Ferdinando Di Cunto
,
Paolo Provero
Journal:
BMC Bioinformatics
Year:
2002
Language:
english
File:
PDF, 607 KB
Your tags:
english, 2002
39
tacg – agrepfor DNA
Harry J Mangalam
Journal:
BMC Bioinformatics
Year:
2002
Language:
english
File:
PDF, 245 KB
Your tags:
english, 2002
40
An algorithm and program for finding sequence specific oligo-nucleotide probes for species identification
Alexander E Pozhitkov
,
Diethard Tautz
Journal:
BMC Bioinformatics
Year:
2002
Language:
english
File:
PDF, 200 KB
Your tags:
english, 2002
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