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Volume 16; Issue 1

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BMC Biology
Volume 16; Issue 1

BMC Biology

Volume 16; Issue 1

1

Q&A: How do gene regulatory networks control environmental responses in plants?

Sun, Ying, Dinneny, José R.

Journal:

Year:

2018

Language:

english

File:

PDF, 501 KB

english, 2018

2

Combined flow cytometry and high-throughput image analysis for the study of essential genes in Caenorhabditis elegans

Hernando-Rodríguez, Blanca, Erinjeri, Annmary Paul, Rodríguez-Palero, María Jesús, Millar, Val, González-Hernández, Sara, Olmedo, María, Schulze, Bettina, Baumeister, Ralf, Muñoz, Manuel J., Askjaer,

Journal:

Year:

2018

Language:

english

File:

PDF, 3.97 MB

english, 2018

3

An adaptable chromosome preparation methodology for use in invertebrate research organisms

Guo, Longhua, Accorsi, Alice, He, Shuonan, Guerrero-Hernández, Carlos, Sivagnanam, Shamilene, McKinney, Sean, Gibson, Matthew, Sánchez Alvarado, Alejandro

Journal:

Year:

2018

Language:

english

File:

PDF, 4.78 MB

english, 2018

4

Factors driving metabolic diversity in the budding yeast subphylum

Opulente, Dana A., Rollinson, Emily J., Bernick-Roehr, Cleome, Hulfachor, Amanda Beth, Rokas, Antonis, Kurtzman, Cletus P., Hittinger, Chris Todd

Journal:

Year:

2018

Language:

english

File:

PDF, 1.68 MB

english, 2018

5

Formation of chimeric genes with essential functions at the origin of eukaryotes

Méheust, Raphaël, Bhattacharya, Debashish, Pathmanathan, Jananan S., McInerney, James O., Lopez, Philippe, Bapteste, Eric

Journal:

Year:

2018

Language:

english

File:

PDF, 2.59 MB

english, 2018

6

Developing accurate prediction systems for the terrestrial environment

Lindenmayer, David B.

Journal:

Year:

2018

Language:

english

File:

PDF, 611 KB

english, 2018

7

An RNAi screen of Rho signalling networks identifies RhoH as a regulator of Rac1 in prostate cancer cell migration

Tajadura-Ortega, Virginia, Garg, Ritu, Allen, Richard, Owczarek, Claudia, Bright, Michael D., Kean, Samuel, Mohd-Noor, Aisyah, Grigoriadis, Anita, Elston, Timothy C., Hahn, Klaus M., Ridley, Anne J.

Journal:

Year:

2018

Language:

english

File:

PDF, 3.71 MB

english, 2018

8

How structural elements evolving from bacterial to human SLC6 transporters enabled new functional properties

Razavi, Asghar M., Khelashvili, George, Weinstein, Harel

Journal:

Year:

2018

Language:

english

File:

PDF, 2.39 MB

english, 2018

9

Downregulation of the NLRP3 inflammasome by adiponectin rescues Duchenne muscular dystrophy

Boursereau, Raphaël, Abou-Samra, Michel, Lecompte, Sophie, Noel, Laurence, Brichard, Sonia M.

Journal:

Year:

2018

Language:

english

File:

PDF, 2.42 MB

english, 2018

10

Identification of a neuronal population in the telencephalon essential for fear conditioning in zebrafish

Lal, Pradeep, Tanabe, Hideyuki, Suster, Maximiliano L., Ailani, Deepak, Kotani, Yuri, Muto, Akira, Itoh, Mari, Iwasaki, Miki, Wada, Hironori, Yaksi, Emre, Kawakami, Koichi

Journal:

Year:

2018

Language:

english

File:

PDF, 2.93 MB

english, 2018

11

The integrated stress response regulates BMP signalling through effects on translation

Malzer, Elke, Dominicus, Caia S., Chambers, Joseph E., Dickens, Jennifer A., Mookerjee, Souradip, Marciniak, Stefan J.

Journal:

Year:

2018

Language:

english

File:

PDF, 3.77 MB

english, 2018

12

Structural insights into the inactivation of CRISPR-Cas systems by diverse anti-CRISPR proteins

Zhu, Yuwei, Zhang, Fan, Huang, Zhiwei

Journal:

Year:

2018

Language:

english

File:

PDF, 2.82 MB

english, 2018

13

InsP3R-SEC5 interaction on phagosomes modulates innate immunity to Candida albicans by promoting cytosolic Ca2+ elevation and TBK1 activity

Yang, Long, Gu, Wenwen, Cheung, King-Ho, Yan, Lan, Tong, Benjamin Chun-Kit, Jiang, Yuanying, Yang, Jun

Journal:

Year:

2018

Language:

english

File:

PDF, 5.34 MB

english, 2018

14

Madagascar ground gecko genome analysis characterizes asymmetric fates of duplicated genes

Hara, Yuichiro, Takeuchi, Miki, Kageyama, Yuka, Tatsumi, Kaori, Hibi, Masahiko, Kiyonari, Hiroshi, Kuraku, Shigehiro

Journal:

Year:

2018

Language:

english

File:

PDF, 2.13 MB

english, 2018

15

Correction to: A sophisticated, differentiated Golgi in the ancestor of eukaryotes

Barlow, Lael D., Nývltová, Eva, Aguilar, Maria, Tachezy, Jan, Dacks, Joel B.

Journal:

Year:

2018

Language:

english

File:

PDF, 227 KB

english, 2018

16

Individual odour signatures that mice learn are shaped by involatile major urinary proteins (MUPs)

Roberts, Sarah A., Prescott, Mark C., Davidson, Amanda J., McLean, Lynn, Beynon, Robert J., Hurst, Jane L.

Journal:

Year:

2018

Language:

english

File:

PDF, 1.78 MB

english, 2018

17

Position-specific intron retention is mediated by the histone methyltransferase SDG725

Wei, Gang, Liu, Kunpeng, Shen, Ting, Shi, Jinlei, Liu, Bing, Han, Miao, Peng, Maolin, Fu, Haihui, Song, Yifan, Zhu, Jun, Dong, Aiwu, Ni, Ting

Journal:

Year:

2018

Language:

english

File:

PDF, 4.95 MB

english, 2018

18

Green monomeric photosensitizing fluorescent protein for photo-inducible protein inactivation and cell ablation

Riani, Yemima Dani, Matsuda, Tomoki, Takemoto, Kiwamu, Nagai, Takeharu

Journal:

Year:

2018

Language:

english

File:

PDF, 1.89 MB

english, 2018

19

A software tool ‘CroCo’ detects pervasive cross-species contamination in next generation sequencing data

Simion, Paul, Belkhir, Khalid, François, Clémentine, Veyssier, Julien, Rink, Jochen C., Manuel, Michaël, Philippe, Hervé, Telford, Maximilian J.

Journal:

Year:

2018

Language:

english

File:

PDF, 1.06 MB

english, 2018

20

Hormonal and environmental signals guiding stomatal development

Qi, Xingyun, Torii, Keiko U.

Journal:

Year:

2018

Language:

english

File:

PDF, 1.09 MB

english, 2018

21

Measuring behavior across scales

Berman, Gordon J.

Journal:

Year:

2018

Language:

english

File:

PDF, 879 KB

english, 2018

22

A Go-type opsin mediates the shadow reflex in the annelid Platynereis dumerilii

Ayers, Thomas, Tsukamoto, Hisao, Gühmann, Martin, Veedin Rajan, Vinoth Babu, Tessmar-Raible, Kristin

Journal:

Year:

2018

Language:

english

File:

PDF, 1.40 MB

english, 2018

23

From top to bottom: Cell polarity in Hedgehog and Wnt trafficking

Gradilla, Ana-Citlali, Sanchez-Hernandez, David, Brunt, Lucy, Scholpp, Steffen

Journal:

Year:

2018

Language:

english

File:

PDF, 1.23 MB

english, 2018

24

Phylogenomics resolves the evolutionary chronicle of our squirting closest relatives

Giribet, Gonzalo

Journal:

Year:

2018

Language:

english

File:

PDF, 413 KB

english, 2018

25

Cross-communication between Gi and Gs in a G-protein-coupled receptor heterotetramer guided by a receptor C-terminal domain

Navarro, Gemma, Cordomí, Arnau, Brugarolas, Marc, Moreno, Estefanía, Aguinaga, David, Pérez-Benito, Laura, Ferre, Sergi, Cortés, Antoni, Casadó, Vicent, Mallol, Josefa, Canela, Enric I., Lluís, Carme,

Journal:

Year:

2018

Language:

english

File:

PDF, 3.58 MB

english, 2018

26

A sophisticated, differentiated Golgi in the ancestor of eukaryotes

Barlow, Lael D., Nývltová, Eva, Aguilar, Maria, Tachezy, Jan, Dacks, Joel B.

Journal:

Year:

2018

Language:

english

File:

PDF, 1.95 MB

english, 2018

27

Nothing in cancer makes sense except…

Journal:

Year:

2018

Language:

english

File:

PDF, 1.34 MB

english, 2018

28

A phylogenomic framework and timescale for comparative studies of tunicates

Delsuc, Frédéric, Philippe, Hervé, Tsagkogeorga, Georgia, Simion, Paul, Tilak, Marie-Ka, Turon, Xavier, López-Legentil, Susanna, Piette, Jacques, Lemaire, Patrick, Douzery, Emmanuel J. P.

Journal:

Year:

2018

Language:

english

File:

PDF, 1.20 MB

english, 2018

29

Genomics analysis of Aphanomyces spp. identifies a new class of oomycete effector associated with host adaptation

Gaulin, Elodie, Pel, Michiel J. C., Camborde, Laurent, San-Clemente, Hélène, Courbier, Sarah, Dupouy, Marie-Alexane, Lengellé, Juliette, Veyssiere, Marine, Le Ru, Aurélie, Grandjean, Frédéric, Cordaux

Journal:

Year:

2018

Language:

english

File:

PDF, 2.31 MB

english, 2018

30

Pangenome analyses of the wheat pathogen Zymoseptoria tritici reveal the structural basis of a highly plastic eukaryotic genome

Plissonneau, Clémence, Hartmann, Fanny E., Croll, Daniel

Journal:

Year:

2018

Language:

english

File:

PDF, 2.01 MB

english, 2018

31

Systematic target function annotation of human transcription factors

Li, Yong Fuga, Altman, Russ B.

Journal:

Year:

2018

Language:

english

File:

PDF, 7.42 MB

english, 2018

32

PINK1 import regulation; a fine system to convey mitochondrial stress to the cytosol

Sekine, Shiori, Youle, Richard J.

Journal:

Year:

2018

Language:

english

File:

PDF, 1.23 MB

english, 2018

33

Phthiocerol dimycocerosates promote access to the cytosol and intracellular burden of Mycobacterium tuberculosis in lymphatic endothelial cells

Lerner, Thomas R., Queval, Christophe J., Fearns, Antony, Repnik, Urska, Griffiths, Gareth, Gutierrez, Maximiliano G.

Journal:

Year:

2018

Language:

english

File:

PDF, 5.22 MB

english, 2018

34

A role for endothelial nitric oxide synthase in intestinal stem cell proliferation and mesenchymal colorectal cancer

Peñarando, Jon, López-Sánchez, Laura M., Mena, Rafael, Guil-Luna, Silvia, Conde, Francisco, Hernández, Vanessa, Toledano, Marta, Gudiño, Victoria, Raponi, Michela, Billard, Caroline, Villar, Carlos, D

Journal:

Year:

2018

Language:

english

File:

PDF, 6.76 MB

english, 2018

35

De novo assembly of the complex genome of Nippostrongylus brasiliensis using MinION long reads

Eccles, David, Chandler, Jodie, Camberis, Mali, Henrissat, Bernard, Koren, Sergey, Le Gros, Graham, Ewbank, Jonathan J.

Journal:

Year:

2018

Language:

english

File:

PDF, 2.75 MB

english, 2018

36

Hsp70 at the membrane: driving protein translocation

Craig, Elizabeth A.

Journal:

Year:

2018

Language:

english

File:

PDF, 1.54 MB

english, 2018

37

A live cell assay of GPCR coupling allows identification of optogenetic tools for controlling Go and Gi signaling

Ballister, Edward R., Rodgers, Jessica, Martial, Franck, Lucas, Robert J.

Journal:

Year:

2018

Language:

english

File:

PDF, 2.01 MB

english, 2018

38

Will human influences on evolutionary dynamics in the wild pervade the Anthropocene?

Pelletier, Fanie, Coltman, David W.

Journal:

Year:

2018

Language:

english

File:

PDF, 1.02 MB

english, 2018

39

WorMachine: machine learning-based phenotypic analysis tool for worms

Hakim, Adam, Mor, Yael, Toker, Itai Antoine, Levine, Amir, Neuhof, Moran, Markovitz, Yishai, Rechavi, Oded

Journal:

Year:

2018

Language:

english

File:

PDF, 1.55 MB

english, 2018

40

Two-step interphase microtubule disassembly aids spindle morphogenesis

Mchedlishvili, Nunu, Matthews, Helen K., Corrigan, Adam, Baum, Buzz

Journal:

Year:

2018

Language:

english

File:

PDF, 7.87 MB

english, 2018

41

Alarm pheromone and kairomone detection via bitter taste receptors in the mouse Grueneberg ganglion

Moine, Fabian, Brechbühl, Julien, Nenniger Tosato, Monique, Beaumann, Manon, Broillet, Marie-Christine

Journal:

Year:

2018

Language:

english

File:

PDF, 4.82 MB

english, 2018

42

A genetically encoded Ca2+ indicator based on circularly permutated sea anemone red fluorescent protein eqFP578

Shen, Yi, Dana, Hod, Abdelfattah, Ahmed S., Patel, Ronak, Shea, Jamien, Molina, Rosana S., Rawal, Bijal, Rancic, Vladimir, Chang, Yu-Fen, Wu, Lanshi, Chen, Yingche, Qian, Yong, Wiens, Matthew D., Hamb

Journal:

Year:

2018

Language:

english

File:

PDF, 4.61 MB

english, 2018

43

Marked differences in tight junction composition and macromolecular permeability among different intestinal cell types

Pearce, Sarah C., Al-Jawadi, Arwa, Kishida, Kunihiro, Yu, Shiyan, Hu, Madeleine, Fritzky, Luke F., Edelblum, Karen L., Gao, Nan, Ferraris, Ronaldo P.

Journal:

Year:

2018

Language:

english

File:

PDF, 4.55 MB

english, 2018

44

Phylogenomics of the olive tree (Olea europaea) reveals the relative contribution of ancient allo- and autopolyploidization events

Julca, Irene, Marcet-Houben, Marina, Vargas, Pablo, Gabaldón, Toni

Journal:

Year:

2018

Language:

english

File:

PDF, 1.75 MB

english, 2018

45

ADMP controls the size of Spemann's organizer through a network of self-regulating expansion-restriction signals

Leibovich, Avi, Kot-Leibovich, Hadas, Ben-Zvi, Danny, Fainsod, Abraham

Journal:

Year:

2018

Language:

english

File:

PDF, 4.31 MB

english, 2018

46

Stress-induced reproductive arrest in Drosophila occurs through ETH deficiency-mediated suppression of oogenesis and ovulation

Meiselman, Matthew R., Kingan, Timothy G., Adams, Michael E.

Journal:

Year:

2018

Language:

english

File:

PDF, 3.95 MB

english, 2018

47

Sox5 is involved in germ-cell regulation and sex determination in medaka following co-option of nested transposable elements

Schartl, Manfred, Schories, Susanne, Wakamatsu, Yuko, Nagao, Yusuke, Hashimoto, Hisashi, Bertin, Chloé, Mourot, Brigitte, Schmidt, Cornelia, Wilhelm, Dagmar, Centanin, Lazaro, Guiguen, Yann, Herpin, A

Journal:

Year:

2018

Language:

english

File:

PDF, 3.07 MB

english, 2018

48

Q&A: Trash talk: disposal and remote degradation of neuronal garbage

Arnold, Meghan Lee, Melentijevic, Ilija, Smart, Anna Joelle, Driscoll, Monica

Journal:

Year:

2018

Language:

english

File:

PDF, 1.22 MB

english, 2018

49

A phosphoinositide map at the shoot apical meristem in Arabidopsis thaliana

Stanislas, Thomas, Platre, Matthieu Pierre, Liu, Mengying, Rambaud-Lavigne, Léa E. S., Jaillais, Yvon, Hamant, Olivier

Journal:

Year:

2018

Language:

english

File:

PDF, 8.22 MB

english, 2018

50

Early life diet conditions the molecular response to post-weaning protein restriction in the mouse

Danson, Amy F., Marzi, Sarah J., Lowe, Robert, Holland, Michelle L., Rakyan, Vardhman K.

Journal:

Year:

2018

Language:

english

File:

PDF, 1.62 MB

english, 2018

51

Time-resolved transcriptome and proteome landscape of human regulatory T cell (Treg) differentiation reveals novel regulators of FOXP3

Schmidt, Angelika, Marabita, Francesco, Kiani, Narsis A., Gross, Catharina C., Johansson, Henrik J., Éliás, Szabolcs, Rautio, Sini, Eriksson, Matilda, Fernandes, Sunjay Jude, Silberberg, Gilad, Ullah,

Journal:

Year:

2018

Language:

english

File:

PDF, 6.51 MB

english, 2018

52

Harnessing single-cell genomics to improve the physiological fidelity of organoid-derived cell types

Mead, Benjamin E., Ordovas-Montanes, Jose, Braun, Alexandra P., Levy, Lauren E., Bhargava, Prerna, Szucs, Matthew J., Ammendolia, Dustin A., MacMullan, Melanie A., Yin, Xiaolei, Hughes, Travis K., Wad

Journal:

Year:

2018

Language:

english

File:

PDF, 5.42 MB

english, 2018

53

Transposable element insertions shape gene regulation and melanin production in a fungal pathogen of wheat

Krishnan, Parvathy, Meile, Lukas, Plissonneau, Clémence, Ma, Xin, Hartmann, Fanny E., Croll, Daniel, McDonald, Bruce A., Sánchez-Vallet, Andrea

Journal:

Year:

2018

Language:

english

File:

PDF, 3.46 MB

english, 2018

54

A gene regulatory network underlying the formation of pre-placodal ectoderm in Xenopus laevis

Maharana, Santosh Kumar, Schlosser, Gerhard

Journal:

Year:

2018

Language:

english

File:

PDF, 5.73 MB

english, 2018

55

CDC42 controls the activation of primordial follicles by regulating PI3K signaling in mouse oocytes

Yan, Hao, Zhang, Jiawei, Wen, Jia, Wang, Yibo, Niu, Wanbao, Teng, Zhen, Zhao, Tongtong, Dai, Yanli, Zhang, Yan, Wang, Chao, Qin, Yingying, Xia, Guoliang, Zhang, Hua

Journal:

Year:

2018

Language:

english

File:

PDF, 16.14 MB

english, 2018

56

Comparison of village dog and wolf genomes highlights the role of the neural crest in dog domestication

Pendleton, Amanda L., Shen, Feichen, Taravella, Angela M., Emery, Sarah, Veeramah, Krishna R., Boyko, Adam R., Kidd, Jeffrey M.

Journal:

Year:

2018

Language:

english

File:

PDF, 3.46 MB

english, 2018

57

Structural complexity of the co-chaperone SGTA: a conserved C-terminal region is implicated in dimerization and substrate quality control

Martínez-Lumbreras, Santiago, Krysztofinska, Ewelina M., Thapaliya, Arjun, Spilotros, Alessandro, Matak-Vinkovic, Dijana, Salvadori, Enrico, Roboti, Peristera, Nyathi, Yvonne, Muench, Janina H., Roess

Journal:

Year:

2018

Language:

english

File:

PDF, 4.05 MB

english, 2018

58

FlashFry: a fast and flexible tool for large-scale CRISPR target design

McKenna, Aaron, Shendure, Jay

Journal:

Year:

2018

Language:

english

File:

PDF, 858 KB

english, 2018

59

Altering cortical input unmasks synaptic phenotypes in the YAC128 cortico-striatal co-culture model of Huntington disease

Schmidt, Mandi E., Buren, Caodu, Mackay, James P., Cheung, Daphne, Dal Cengio, Louisa, Raymond, Lynn A., Hayden, Michael R.

Journal:

Year:

2018

Language:

english

File:

PDF, 2.78 MB

english, 2018

60

Synaptopathy, circuitopathy and the computational biology of Huntington’s disease

Hannan, Anthony J.

Journal:

Year:

2018

Language:

english

File:

PDF, 314 KB

english, 2018

61

Comparative genomics of the miniature wasp and pest control agent Trichogramma pretiosum

Lindsey, Amelia R. I., Kelkar, Yogeshwar D., Wu, Xin, Sun, Dan, Martinson, Ellen O., Yan, Zhichao, Rugman-Jones, Paul F., Hughes, Daniel S. T., Murali, Shwetha C., Qu, Jiaxin, Dugan, Shannon, Lee, San

Journal:

Year:

2018

Language:

english

File:

PDF, 2.88 MB

english, 2018

62

Horizons in the evolution of aging

Flatt, Thomas, Partridge, Linda

Journal:

Year:

2018

File:

PDF, 2.44 MB

2018

63

Open questions: How many genes do we have?

Salzberg, Steven L.

Journal:

Year:

2018

File:

PDF, 293 KB

2018

64

The different axes of the mammalian mitochondrial unfolded protein response

Münch, Christian

Journal:

Year:

2018

Language:

english

File:

PDF, 1.19 MB

english, 2018

65

A bacterial route for folic acid supplementation

Maynard, Claire, Cummins, Ian, Green, Jacalyn, Weinkove, David

Journal:

Year:

2018

Language:

english

File:

PDF, 1.29 MB

english, 2018

66

Stable predictive markers for Phytophthora sojae avirulence genes that impair infection of soybean uncovered by whole genome sequencing of 31 isolates

Arsenault-Labrecque, Geneviève, Sonah, Humira, Lebreton, Amandine, Labbé, Caroline, Marchand, Geneviève, Xue, Allen, Belzile, François, Knaus, Brian J., Grünwald, Niklaus J., Bélanger, Richard R.

Journal:

Year:

2018

Language:

english

File:

PDF, 3.07 MB

english, 2018

67

Light sheet theta microscopy for rapid high-resolution imaging of large biological samples

Migliori, Bianca, Datta, Malika S., Dupre, Christophe, Apak, Mehmet C., Asano, Shoh, Gao, Ruixuan, Boyden, Edward S., Hermanson, Ola, Yuste, Rafael, Tomer, Raju

Journal:

Year:

2018

Language:

english

File:

PDF, 5.42 MB

english, 2018

68

Glucocorticoid-dependent REDD1 expression reduces muscle metabolism to enable adaptation under energetic stress

Britto, Florian A., Cortade, Fabienne, Belloum, Yassine, Blaquière, Marine, Gallot, Yann S., Docquier, Aurélie, Pagano, Allan F., Jublanc, Elodie, Bendridi, Nadia, Koechlin-Ramonatxo, Christelle, Chab

Journal:

Year:

2018

Language:

english

File:

PDF, 2.13 MB

english, 2018

69

Naked mole-rat transcriptome signatures of socially suppressed sexual maturation and links of reproduction to aging

Bens, Martin, Szafranski, Karol, Holtze, Susanne, Sahm, Arne, Groth, Marco, Kestler, Hans A., Hildebrandt, Thomas B., Platzer, Matthias

Journal:

Year:

2018

Language:

english

File:

PDF, 1.45 MB

english, 2018

70

Species comparison of liver proteomes reveals links to naked mole-rat longevity and human aging

Heinze, Ivonne, Bens, Martin, Calzia, Enrico, Holtze, Susanne, Dakhovnik, Oleksandr, Sahm, Arne, Kirkpatrick, Joanna M., Szafranski, Karol, Romanov, Natalie, Sama, Sai Nagender, Holzer, Kerstin, Singe

Journal:

Year:

2018

Language:

english

File:

PDF, 1.50 MB

english, 2018

71

Using in vivo oxidation status of one- and two-component redox relays to determine H2O2 levels linked to signaling and toxicity

Domènech, Alba, Ayté, José, Antunes, Fernando, Hidalgo, Elena

Journal:

Year:

2018

Language:

english

File:

PDF, 2.61 MB

english, 2018

72

Proteasomal degradation competes with Mia40-mediated import into mitochondria

Zöller, Eva, Todd Alexander, R., Herrmann, Johannes M.

Journal:

Year:

2018

Language:

english

File:

PDF, 722 KB

english, 2018

73

Viral diversity is an obligate consideration in CRISPR/Cas9 designs for targeting the HIV reservoir

Roychoudhury, Pavitra, De Silva Feelixge, Harshana, Reeves, Daniel, Mayer, Bryan T., Stone, Daniel, Schiffer, Joshua T., Jerome, Keith R.

Journal:

Year:

2018

Language:

english

File:

PDF, 1.74 MB

english, 2018

74

A GWAS on Helicobacter pylori strains points to genetic variants associated with gastric cancer risk

Berthenet, Elvire, Yahara, Koji, Thorell, Kaisa, Pascoe, Ben, Meric, Guillaume, Mikhail, Jane M., Engstrand, Lars, Enroth, Helena, Burette, Alain, Megraud, Francis, Varon, Christine, Atherton, John C,

Journal:

Year:

2018

Language:

english

File:

PDF, 1.46 MB

english, 2018

75

Small RNA profiling of low biomass samples: identification and removal of contaminants

Heintz-Buschart, Anna, Yusuf, Dilmurat, Kaysen, Anne, Etheridge, Alton, Fritz, Joëlle V., May, Patrick, de Beaufort, Carine, Upadhyaya, Bimal B., Ghosal, Anubrata, Galas, David J., Wilmes, Paul

Journal:

Year:

2018

Language:

english

File:

PDF, 1.62 MB

english, 2018

76

Structural and functional characterization of protein–lipid interactions of the Salmonella typhimurium melibiose transporter MelB

Hariharan, Parameswaran, Tikhonova, Elena, Medeiros-Silva, João, Jeucken, Aike, Bogdanov, Mikhail V., Dowhan, William, Brouwers, Jos F., Weingarth, Markus, Guan, Lan

Journal:

Year:

2018

Language:

english

File:

PDF, 1.95 MB

english, 2018

77

Comparative analysis of single-stranded DNA donors to generate conditional null mouse alleles

Lanza, Denise G., Gaspero, Angelina, Lorenzo, Isabel, Liao, Lan, Zheng, Ping, Wang, Ying, Deng, Yu, Cheng, Chonghui, Zhang, Chuansheng, Seavitt, John R., DeMayo, Francesco J., Xu, Jianming, Dickinson,

Journal:

Year:

2018

Language:

english

File:

PDF, 1.72 MB

english, 2018

78

Towards a Dynamic Interaction Network of Life to unify and expand the evolutionary theory

Bapteste, Eric, Huneman, Philippe

Journal:

Year:

2018

Language:

english

File:

PDF, 1.17 MB

english, 2018

79

Entering an era of dynamic structural biology…

Orville, Allen M.

Journal:

Year:

2018

Language:

english

File:

PDF, 618 KB

english, 2018

80

Determinants of the cytosolic turnover of mitochondrial intermembrane space proteins

Kowalski, Lukasz, Bragoszewski, Piotr, Khmelinskii, Anton, Glow, Edyta, Knop, Michael, Chacinska, Agnieszka

Journal:

Year:

2018

Language:

english

File:

PDF, 4.00 MB

english, 2018

81

Caring for parents: an evolutionary rationale

Garay, J., Számadó, S., Varga, Z., Szathmáry, E.

Journal:

Year:

2018

Language:

english

File:

PDF, 1.95 MB

english, 2018

82

Enzyme intermediates captured “on the fly” by mix-and-inject serial crystallography

Olmos, Jose L., Pandey, Suraj, Martin-Garcia, Jose M., Calvey, George, Katz, Andrea, Knoska, Juraj, Kupitz, Christopher, Hunter, Mark S., Liang, Mengning, Oberthuer, Dominik, Yefanov, Oleksandr, Wiedo

Journal:

Year:

2018

Language:

english

File:

PDF, 1.68 MB

english, 2018

83

Attention decouples action potentials from the phase of local field potentials in macaque visual cortical area MT

Esghaei, Moein, Daliri, Mohammad Reza, Treue, Stefan

Journal:

Year:

2018

Language:

english

File:

PDF, 1010 KB

english, 2018

84

Evolutionary stability of topologically associating domains is associated with conserved gene regulation

Krefting, Jan, Andrade-Navarro, Miguel A., Ibn-Salem, Jonas

Journal:

Year:

2018

Language:

english

File:

PDF, 1.24 MB

english, 2018

85

Application of long single-stranded DNA donors in genome editing: generation and validation of mouse mutants

Codner, Gemma F., Mianné, Joffrey, Caulder, Adam, Loeffler, Jorik, Fell, Rachel, King, Ruairidh, Allan, Alasdair J., Mackenzie, Matthew, Pike, Fran J., McCabe, Christopher V., Christou, Skevoulla, Joy

Journal:

Year:

2018

Language:

english

File:

PDF, 1.63 MB

english, 2018

86

Targeting the Tie2–αvβ3 integrin axis with bi-specific reagents for the inhibition of angiogenesis

Shlamkovich, Tomer, Aharon, Lidan, Koslawsky, Dana, Einav, Yulia, Papo, Niv

Journal:

Year:

2018

Language:

english

File:

PDF, 5.61 MB

english, 2018

87

A unified resource for transcriptional regulation in Escherichia coli K-12 incorporating high-throughput-generated binding data into RegulonDB version 10.0

Santos-Zavaleta, Alberto, Sánchez-Pérez, Mishael, Salgado, Heladia, Velázquez-Ramírez, David A., Gama-Castro, Socorro, Tierrafría, Víctor H., Busby, Stephen J. W., Aquino, Patricia, Fang, Xin, Palsson

Journal:

Year:

2018

Language:

english

File:

PDF, 1.43 MB

english, 2018

88

Horizons in the evolution of aging

Flatt, Thomas, Partridge, Linda

Journal:

Year:

2018

Language:

english

File:

PDF, 2.44 MB

english, 2018

89

Open questions: How many genes do we have?

Salzberg, Steven L.

Journal:

Year:

2018

Language:

english

File:

PDF, 293 KB

english, 2018

90

Ultrastructural analysis of mitotic Drosophila S2 cells identifies distinctive microtubule and intracellular membrane behaviors

Strunov, Anton, Boldyreva, Lidiya V., Andreyeva, Evgeniya N., Pavlova, Gera A., Popova, Julia V., Razuvaeva, Alena V., Anders, Alina F., Renda, Fioranna, Pindyurin, Alexey V., Gatti, Maurizio, Kiselev

Journal:

Year:

2018

Language:

english

File:

PDF, 15.29 MB

english, 2018

91

Additive contributions of melanopsin and both cone types provide broadband sensitivity to mouse pupil control

Hayter, Edward A., Brown, Timothy M.

Journal:

Year:

2018

Language:

english

File:

PDF, 5.20 MB

english, 2018

92

Real-time tracking of complex ubiquitination cascades using a fluorescent confocal on-bead assay

Koszela, Joanna, Pham, Nhan T., Evans, David, Mann, Stefan, Perez-Pi, Irene, Shave, Steven, Ceccarelli, Derek F. J., Sicheri, Frank, Tyers, Mike, Auer, Manfred

Journal:

Year:

2018

Language:

english

File:

PDF, 1.43 MB

english, 2018

93

Ontogenetic and phylogenetic simplification during white stripe evolution in clownfishes

Salis, Pauline, Roux, Natacha, Soulat, Olivier, Lecchini, David, Laudet, Vincent, Frédérich, Bruno

Journal:

Year:

2018

Language:

english

File:

PDF, 3.62 MB

english, 2018

94

Dehydration triggers ecdysone-mediated recognition-protein priming and elevated anti-bacterial immune responses in Drosophila Malpighian tubule renal cells

Zheng, Wenjing, Rus, Florentina, Hernandez, Ana, Kang, Ping, Goldman, William, Silverman, Neal, Tatar, Marc

Journal:

Year:

2018

Language:

english

File:

PDF, 2.92 MB

english, 2018

95

Microdomain formation is a general property of bacterial membrane proteins and induces heterogeneity of diffusion patterns

Lucena, Daniella, Mauri, Marco, Schmidt, Felix, Eckhardt, Bruno, Graumann, Peter L.

Journal:

Year:

2018

Language:

english

File:

PDF, 3.62 MB

english, 2018

96

Clonal raider ant brain transcriptomics identifies candidate molecular mechanisms for reproductive division of labor

Libbrecht, Romain, Oxley, Peter R., Kronauer, Daniel J. C.

Journal:

Year:

2018

Language:

english

File:

PDF, 994 KB

english, 2018

97

Parkinson’s disease-linked Parkin mutations impair glutamatergic signaling in hippocampal neurons

Zhu, Mei, Cortese, Giuseppe P., Waites, Clarissa L.

Journal:

Year:

2018

Language:

english

File:

PDF, 7.40 MB

english, 2018

98

The piRNA pathway responds to environmental signals to establish intergenerational adaptation to stress

Belicard, Tony, Jareosettasin, Pree, Sarkies, Peter

Journal:

Year:

2018

Language:

english

File:

PDF, 1.26 MB

english, 2018

99

Genome sequencing of rice subspecies and genetic analysis of recombinant lines reveals regional yield- and quality-associated loci

Li, Xiukun, Wu, Lian, Wang, Jiahong, Sun, Jian, Xia, Xiuhong, Geng, Xin, Wang, Xuhong, Xu, Zhengjin, Xu, Quan

Journal:

Year:

2018

Language:

english

File:

PDF, 2.39 MB

english, 2018

100

Open questions: CRISPR biology

Koonin, Eugene V.

Journal:

Year:

2018

Language:

english

File:

PDF, 272 KB

english, 2018

101

Reduced PRC2 function alters male germline epigenetic programming and paternal inheritance

Stringer, Jessica M., Forster, Samuel C., Qu, Zhipeng, Prokopuk, Lexie, O’Bryan, Moira K., Gardner, David K., White, Stefan J., Adelson, David, Western, Patrick S.

Journal:

Year:

2018

Language:

english

File:

PDF, 2.81 MB

english, 2018

102

Heterogeneous combinatorial expression of Hoxd genes in single cells during limb development

Fabre, P. J., Leleu, M., Mascrez, B., Lo Giudice, Q., Cobb, J., Duboule, D.

Journal:

Year:

2018

Language:

english

File:

PDF, 2.09 MB

english, 2018

103

Histone variants H2A.Z and H3.3 coordinately regulate PRC2-dependent H3K27me3 deposition and gene expression regulation in mES cells

Wang, Yan, Long, Haizhen, Yu, Juan, Dong, Liping, Wassef, Michel, Zhuo, Baowen, Li, Xia, Zhao, Jicheng, Wang, Min, Liu, Cuifang, Wen, Zengqi, Chang, Luyuan, Chen, Ping, Wang, Qian-fei, Xu, Xueqing, Ma

Journal:

Year:

2018

Language:

english

File:

PDF, 7.83 MB

english, 2018

104

Synaptic coupling of inner ear sensory cells is controlled by brevican-based extracellular matrix baskets resembling perineuronal nets

Sonntag, Mandy, Blosa, Maren, Schmidt, Sophie, Reimann, Katja, Blum, Kerstin, Eckrich, Tobias, Seeger, Gudrun, Hecker, Dietmar, Schick, Bernhard, Arendt, Thomas, Engel, Jutta, Morawski, Markus

Journal:

Year:

2018

Language:

english

File:

PDF, 12.97 MB

english, 2018

105

Brevican “nets” voltage-gated calcium channels at the hair cell ribbon synapse

Coate, Thomas M., Conant, Katherine

Journal:

Year:

2018

Language:

english

File:

PDF, 764 KB

english, 2018

106

Loss of males from mixed-sex societies in termites

Yashiro, Toshihisa, Lo, Nathan, Kobayashi, Kazuya, Nozaki, Tomonari, Fuchikawa, Taro, Mizumoto, Nobuaki, Namba, Yusuke, Matsuura, Kenji

Journal:

Year:

2018

Language:

english

File:

PDF, 2.11 MB

english, 2018

107

The disposable male— the ultimate emancipation of females?

Journal:

Year:

2018

Language:

english

File:

PDF, 900 KB

english, 2018

108

Cell type-specific expression profiling unravels the development and evolution of stinging cells in sea anemone

Sunagar, Kartik, Columbus-Shenkar, Yaara Y, Fridrich, Arie, Gutkovich, Nadya, Aharoni, Reuven, Moran, Yehu

Journal:

Year:

2018

Language:

english

File:

PDF, 4.36 MB

english, 2018

109

VOPP1 promotes breast tumorigenesis by interacting with the tumor suppressor WWOX

Bonin, Florian, Taouis, Karim, Azorin, Paula, Petitalot, Ambre, Tariq, Zakia, Nola, Sebastien, Bouteille, Nadège, Tury, Sandrine, Vacher, Sophie, Bièche, Ivan, Rais, Khadija Ait, Pierron, Gaelle, Fuhr

Journal:

Year:

2018

Language:

english

File:

PDF, 6.93 MB

english, 2018

110

UBN1/2 of HIRA complex is responsible for recognition and deposition of H3.3 at cis-regulatory elements of genes in mouse ES cells

Xiong, Chaoyang, Wen, Zengqi, Yu, Juan, Chen, Jun, Liu, Chao-Pei, Zhang, Xiaodong, Chen, Ping, Xu, Rui-Ming, Li, Guohong

Journal:

Year:

2018

Language:

english

File:

PDF, 4.32 MB

english, 2018

111

Identification of cell types in a mouse brain single-cell atlas using low sampling coverage

Bhaduri, Aparna, Nowakowski, Tomasz J, Pollen, Alex A, Kriegstein, Arnold R

Journal:

Year:

2018

Language:

english

File:

PDF, 3.00 MB

english, 2018

112

Food perception without ingestion leads to metabolic changes and irreversible developmental arrest in C. elegans

Kaplan, Rebecca E. W., Webster, Amy K., Chitrakar, Rojin, Dent, Joseph A., Baugh, L. Ryan

Journal:

Year:

2018

Language:

english

File:

PDF, 2.03 MB

english, 2018

113

Open questions: knowing who’s who in multicellular animals is not always as simple as we imagine

Weiss, Robin A.

Journal:

Year:

2018

Language:

english

File:

PDF, 288 KB

english, 2018

114

Microtubule polyglutamylation and acetylation drive microtubule dynamics critical for platelet formation

van Dijk, Juliette, Bompard, Guillaume, Cau, Julien, Kunishima, Shinji, Rabeharivelo, Gabriel, Mateos-Langerak, Julio, Cazevieille, Chantal, Cavelier, Patricia, Boizet-Bonhoure, Brigitte, Delsert, Cla

Journal:

Year:

2018

Language:

english

File:

PDF, 2.78 MB

english, 2018

115

Quantifying and reducing spurious alignments for the analysis of ultra-short ancient DNA sequences

de Filippo, Cesare, Meyer, Matthias, Prüfer, Kay

Journal:

Year:

2018

Language:

english

File:

PDF, 1.11 MB

english, 2018

116

From bacterial genomics to clinical epidemiology: an interview with Bill Hanage

Hanage, William P.

Journal:

Year:

2018

Language:

english

File:

PDF, 496 KB

english, 2018

117

Startling responses of zebrafish: an interview with Harold Burgess

Burgess, Harold A.

Journal:

Year:

2018

Language:

english

File:

PDF, 435 KB

english, 2018

118

From plant immunity to food security: an interview with Ksenia Krasileva

Krasileva, Ksenia

Journal:

Year:

2018

Language:

english

File:

PDF, 595 KB

english, 2018

119

On microbes, aging and the worm: an interview with David Weinkove

Weinkove, David

Journal:

Year:

2018

Language:

english

File:

PDF, 435 KB

english, 2018

120

Open questions: why should we care about ER-phagy and ER remodelling?

Journal:

Year:

2018

Language:

english

File:

PDF, 463 KB

english, 2018

121

Horizons in evolutionary genomics: an interview with David Ferrier

Ferrier, David E. K.

Journal:

Year:

2018

Language:

english

File:

PDF, 630 KB

english, 2018

122

Open questions: respiratory chain supercomplexes—why are they there and what do they do?

Journal:

Year:

2018

Language:

english

File:

PDF, 629 KB

english, 2018

123

Evolving eukaryotes: an interview with Joel Dacks

Journal:

Year:

2018

Language:

english

File:

PDF, 387 KB

english, 2018

124

Dissecting the forces that shape crops: an interview with Ryohei Terauchi

Terauchi, Ryohei

Journal:

Year:

2018

Language:

english

File:

PDF, 604 KB

english, 2018

125

Studying the microbiome and its complexities: an interview with Alan Walker

Walker, Alan W.

Journal:

Year:

2018

Language:

english

File:

PDF, 385 KB

english, 2018

126

When a physicist wanders into biology…: an interview with KC Huang

Huang, Kerwyn Casey

Journal:

Year:

2018

Language:

english

File:

PDF, 361 KB

english, 2018

127

Unraveling rain forest biodiversity: an interview with Thomas Couvreur

Couvreur, Thomas L. P.

Journal:

Year:

2018

Language:

english

File:

PDF, 2.01 MB

english, 2018

128

Open questions: why are babies rarely born with cancer?

Monje, Michelle

Journal:

Year:

2018

Language:

english

File:

PDF, 243 KB

english, 2018

129

Correction to: The introduction history of invasive garden ants in Europe: integrating genetic, chemical and behavioural approaches

Ugelvig, Line V., Drijfhout, Falko P., Kronauer, Daniel J. C., Boomsma, Jacobus J., Pedersen, Jes S., Cremer, Sylvia

Journal:

Year:

2018

Language:

english

File:

PDF, 316 KB

english, 2018

130

Open questions: what are the genes underlying antagonistic coevolution?

Journal:

Year:

2018

Language:

english

File:

PDF, 263 KB

english, 2018

131

Systems biology of meristems: an interview with Teva Vernoux

Journal:

Year:

2018

Language:

english

File:

PDF, 423 KB

english, 2018

132

Classifying human promoters by occupancy patterns identifies recurring sequence elements, combinatorial binding, and spatial interactions

Yang, Xinyi, Vingron, Martin

Journal:

Year:

2018

Language:

english

File:

PDF, 5.72 MB

english, 2018

133

Precise A•T to G•C base editing in the zebrafish genome

Qin, Wei, Lu, Xiaochan, Liu, Yunxing, Bai, Haipeng, Li, Song, Lin, Shuo

Journal:

Year:

2018

Language:

english

File:

PDF, 3.33 MB

english, 2018

134

Communicating through scents: an interview with Jane Hurst

Journal:

Year:

2018

Language:

english

File:

PDF, 602 KB

english, 2018

135

Common ancestry of heterodimerizing TALE homeobox transcription factors across Metazoa and Archaeplastida

Joo, Sunjoo, Wang, Ming Hsiu, Lui, Gary, Lee, Jenny, Barnas, Andrew, Kim, Eunsoo, Sudek, Sebastian, Worden, Alexandra Z., Lee, Jae-Hyeok

Journal:

Year:

2018

Language:

english

File:

PDF, 4.59 MB

english, 2018

136

Nuclear genome sequence of the plastid-lacking cryptomonad Goniomonas avonlea provides insights into the evolution of secondary plastids

Cenci, Ugo, Sibbald, Shannon J., Curtis, Bruce A., Kamikawa, Ryoma, Eme, Laura, Moog, Daniel, Henrissat, Bernard, Maréchal, Eric, Chabi, Malika, Djemiel, Christophe, Roger, Andrew J., Kim, Eunsoo, Arc

Journal:

Year:

2018

Language:

english

File:

PDF, 5.06 MB

english, 2018

137

Detecting neural assemblies in calcium imaging data

Mölter, Jan, Avitan, Lilach, Goodhill, Geoffrey J.

Journal:

Year:

2018

Language:

english

File:

PDF, 6.15 MB

english, 2018

138

Genome of tiny predator with big appetite

McFadden, Geoffrey Ian

Journal:

Year:

2018

Language:

english

File:

PDF, 1.35 MB

english, 2018

139

Migration through a small pore disrupts inactive chromatin organization in neutrophil-like cells

Jacobson, Elsie C., Perry, Jo K., Long, David S., Olins, Ada L., Olins, Donald E., Wright, Bryon E., Vickers, Mark H., O’Sullivan, Justin M.

Journal:

Year:

2018

Language:

english

File:

PDF, 2.25 MB

english, 2018

140

Evolution of mitochondrial TAT translocases illustrates the loss of bacterial protein transport machines in mitochondria

Petrů, Markéta, Wideman, Jeremy, Moore, Kristoffer, Alcock, Felicity, Palmer, Tracy, Doležal, Pavel

Journal:

Year:

2018

Language:

english

File:

PDF, 2.78 MB

english, 2018

141

Trait heritability in major transitions

Herron, Matthew D., Zamani-Dahaj, Seyed A., Ratcliff, William C.

Journal:

Year:

2018

Language:

english

File:

PDF, 3.36 MB

english, 2018

142

Mitochondrial unfolded protein response transcription factor ATFS-1 promotes longevity in a long-lived mitochondrial mutant through activation of stress response pathways

Wu, Ziyun, Senchuk, Megan M., Dues, Dylan J., Johnson, Benjamin K., Cooper, Jason F., Lew, Leira, Machiela, Emily, Schaar, Claire E., DeJonge, Heather, Blackwell, T. Keith, Van Raamsdonk, Jeremy M.

Journal:

Year:

2018

Language:

english

File:

PDF, 6.02 MB

english, 2018

143

Biological clock function is linked to proactive and reactive personality types

Tudorache, Christian, Slabbekoorn, Hans, Robbers, Yuri, Hin, Eline, Meijer, Johanna H., Spaink, Herman P., Schaaf, Marcel J. M.

Journal:

Year:

2018

Language:

english

File:

PDF, 1.28 MB

english, 2018

144

BE-FLARE: a fluorescent reporter of base editing activity reveals editing characteristics of APOBEC3A and APOBEC3B

Coelho, Matthew A., Li, Songyuan, Pane, Luna Simona, Firth, Mike, Ciotta, Giovanni, Wrigley, Jonathan D., Cuomo, Maria Emanuela, Maresca, Marcello, Taylor, Benjamin J. M.

Journal:

Year:

2018

Language:

english

File:

PDF, 2.65 MB

english, 2018

145

Pathological mutations differentially affect the self-assembly and polymerisation of the innate immune system signalling adaptor molecule MyD88

O’Carroll, Ailís, Chauvin, Brieuc, Brown, James W. P., Meagher, Ava, Coyle, Joanne, Schill, Jurgen, Bhumkhar, Akshay, Hunter, Dominic J. B., Ve, Thomas, Kobe, Bostjan, Sierecki, Emma, Gambin, Yann

Journal:

Year:

2018

Language:

english

File:

PDF, 4.03 MB

english, 2018

146

Homology-independent multiallelic disruption via CRISPR/Cas9-based knock-in yields distinct functional outcomes in human cells

Zhang, Chenzi, He, Xiangjun, Kwok, Yvonne K., Wang, Feng, Xue, Junyi, Zhao, Hui, Suen, Kin Wah, Wang, Chi Chiu, Ren, Jianwei, Chen, George G., Lai, Paul B. S., Li, Jiangchao, Xia, Yin, Chan, Andrew M.

Journal:

Year:

2018

Language:

english

File:

PDF, 3.80 MB

english, 2018

147

Host-parasite interactions: an interview with Emily Troemel

Journal:

Year:

2018

Language:

english

File:

PDF, 418 KB

english, 2018