Volume 9; Issue 1

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BMC Biology
Volume 9; Issue 1

BMC Biology

Volume 9; Issue 1

1

Screening for genes that wire the cerebral cortex

Ludmilla Lokmane, Sonia Garel

Journal:

Year:

2011

Language:

english

File:

PDF, 441 KB

english, 2011

2

Quantitative imaging strategies pave the way for testable biological concepts

Journal:

Year:

2011

Language:

english

File:

PDF, 830 KB

english, 2011

3

Resolving the infection process reveals striking differences in the contribution of environment, genetics and phylogeny to host-parasite interactions

David Duneau, Pepijn Luijckx, Frida Ben-Ami, Christian Laforsch, Dieter Ebert

Journal:

Year:

2011

Language:

english

File:

PDF, 4.98 MB

english, 2011

4

Q&A: What is biophysics?

Huan-Xiang Zhou

Journal:

Year:

2011

Language:

english

File:

PDF, 1.55 MB

english, 2011

5

Evc2 is a positive modulator of Hedgehog signalling that interacts with Evc at the cilia membrane and is also found in the nucleus

Helen J Blair, Stuart Tompson, Yu-Ning Liu, Jennifer Campbell, Katie MacArthur, Chris P Ponting, Victor L Ruiz-Perez, Judith A Goodship

Journal:

Year:

2011

Language:

english

File:

PDF, 1.88 MB

english, 2011

6

History and phylogeny of intermediate filaments: Now in insects

Harald Herrmann, Sergei V Strelkov

Journal:

Year:

2011

Language:

english

File:

PDF, 673 KB

english, 2011

7

Isomin: a novel cytoplasmic intermediate filament protein from an arthropod species

Caterina Mencarelli, Silvia Ciolfi, Daniela Caroti, Pietro Lupetti, Romano Dallai

Journal:

Year:

2011

Language:

english

File:

PDF, 5.95 MB

english, 2011

8

The scavenging of superoxide radicals promotes apoptosis induced by a novel cell-permeable fusion protein, sTRAIL:FeSOD, in tumor necrosis factor-related apoptosis-inducing ligand-resistant leukemia cells

Hongyun Tang, Yong Qin, Jianyong Li, Xingguo Gong

Journal:

Year:

2011

Language:

english

File:

PDF, 3.49 MB

english, 2011

9

A next-generation sequencing method for overcoming the multiple gene copy problem in polyploid phylogenetics, applied toPoagrasses

Philippa C Griffin, Charles Robin, Ary A Hoffmann

Journal:

Year:

2011

Language:

english

File:

PDF, 566 KB

english, 2011

10

Inland post-glacial dispersal in East Asia revealed by mitochondrial haplogroup M9a'b

Min-Sheng Peng, Gounder Malliya Palanichamy, Yong-Gang Yao, Bikash Mitra, Yao-Ting Cheng, Mian Zhao, Jia Liu, Hua-Wei Wang, Hui Pan, Wen-Zhi Wang, A-Mei Zhang, Wen Zhang, Dong Wang, Yang Zou, Yang Yan

Journal:

Year:

2011

Language:

english

File:

PDF, 2.88 MB

english, 2011

11

Q&A: Who isH. sapiensreally, and how do we know?

Mason Liang, Rasmus Nielsen

Journal:

Year:

2011

Language:

english

File:

PDF, 412 KB

english, 2011

12

Toward forward genetic screens in malaria-causing parasites using the piggyBac transposon

Brendan S Crabb, Tania F de Koning-Ward, Paul R Gilson

Journal:

Year:

2011

Language:

english

File:

PDF, 346 KB

english, 2011

13

Learning to live together: mutualism between self-splicing introns and their hosts

David R Edgell, Venkata R Chalamcharla, Marlene Belfort

Journal:

Year:

2011

Language:

english

File:

PDF, 1.99 MB

english, 2011

14

The miswired brain: making connections from neurodevelopment to psychopathology

Kevin J Mitchell

Journal:

Year:

2011

Language:

english

File:

PDF, 162 KB

english, 2011

15

Polyploidization increases meiotic recombination frequency inArabidopsis

Ales Pecinka, Wei Fang, Marc Rehmsmeier, Avraham A Levy, Ortrun Mittelsten Scheid

Journal:

Year:

2011

Language:

english

File:

PDF, 1.99 MB

english, 2011

16

Promiscuity and preferences of metallothioneins: the cell rules

Andrew W Foster, Nigel J Robinson

Journal:

Year:

2011

Language:

english

File:

PDF, 312 KB

english, 2011

17

Butterfly eyespot serial homology: enter the Hox genes

Castelli-Gair James Hombría

Journal:

Year:

2011

Language:

english

File:

PDF, 340 KB

english, 2011

18

Expression of constitutively active erythropoietin receptor in pyramidal neurons of cortex and hippocampus boosts higher cognitive functions in mice

Derya Sargin, Ahmed El-Kordi, Amit Agarwal, Michael Müller, Sonja M Wojcik, Imam Hassouna, Swetlana Sperling, Klaus-Armin Nave, Hannelore Ehrenreich

Journal:

Year:

2011

Language:

english

File:

PDF, 1.71 MB

english, 2011

19

Architectures of archaeal GINS complexes, essential DNA replication initiation factors

Takuji Oyama, Sonoko Ishino, Seiji Fujino, Hiromi Ogino, Tsuyoshi Shirai, Kouta Mayanagi, Mihoko Saito, Naoko Nagasawa, Yoshizumi Ishino, Kosuke Morikawa

Journal:

Year:

2011

Language:

english

File:

PDF, 4.35 MB

english, 2011

20

Lack of global meiotic sex chromosome inactivation, and paucity of tissue-specific gene expression on theDrosophila Xchromosome

Lyudmila M Mikhaylova, Dmitry I Nurminsky

Journal:

Year:

2011

Language:

english

File:

PDF, 564 KB

english, 2011

21

Tunicates push the limits of animal evo-devo

David EK Ferrier

Journal:

Year:

2011

Language:

english

File:

PDF, 684 KB

english, 2011

22

Sex, sex chromosomes and gene expression

Xuemei Lu, Chung-I Wu

Journal:

Year:

2011

Language:

english

File:

PDF, 342 KB

english, 2011

23

PKC isoforms interact with and phosphorylate DNMT1

Geneviève Lavoie, Pierre-Olivier Estève, Nathalie Bibens Laulan, Sriharsa Pradhan, Yves St-Pierre

Journal:

Year:

2011

Language:

english

File:

PDF, 5.23 MB

english, 2011

24

Real-time visualization of heterotrimeric G protein Gq activation in living cells

Merel JW Adjobo-Hermans, Joachim Goedhart, Laura van Weeren, Saskia Nijmeijer, Erik MM Manders, Stefan Offermanns, Theodorus WJ Gadella

Journal:

Year:

2011

Language:

english

File:

PDF, 1.75 MB

english, 2011

25

Identification of a functional docking site in the Rpn1 LRR domain for the UBA-UBL domain protein Ddi1

Tara A Gomez, Natalie Kolawa, Marvin Gee, Michael J Sweredoski, Raymond J Deshaies

Journal:

Year:

2011

Language:

english

File:

PDF, 2.25 MB

english, 2011

26

Microarrays, deep sequencing and the true measure of the transcriptome

John H Malone, Brian Oliver

Journal:

Year:

2011

Language:

english

File:

PDF, 1.80 MB

english, 2011

27

No small feat: microRNA responses during vocal communication in songbirds

Claudio V Mello, Peter V Lovell

Journal:

Year:

2011

Language:

english

File:

PDF, 385 KB

english, 2011

28

DNA replication: archaeal oriGINS

Journal:

Year:

2011

Language:

english

File:

PDF, 392 KB

english, 2011

29

A novel deconvolution method for modeling UDP-N-acetyl-D-glucosamine biosynthetic pathways based on13C mass isotopologue profiles under non-steady-state conditions

Hunter NB Moseley, Andrew N Lane, Alex C Belshoff, Richard M Higashi, Teresa WM Fan

Journal:

Year:

2011

Language:

english

File:

PDF, 2.25 MB

english, 2011

30

Concurrent detection of autolysosome formation and lysosomal degradation by flow cytometry in a high-content screen for inducers of autophagy

Phillip Hundeshagen, Anne Hamacher-Brady, Roland Eils, Nathan R Brady

Journal:

Year:

2011

Language:

english

File:

PDF, 5.95 MB

english, 2011

31

Following autophagy step by step

Tom Egil Hansen, Terje Johansen

Journal:

Year:

2011

Language:

english

File:

PDF, 541 KB

english, 2011

32

Shaping mechanisms of metal specificity in a family of metazoan metallothioneins: evolutionary differentiation of mollusc metallothioneins

Òscar Palacios, Ayelen Pagani, Sílvia Pérez-Rafael, Margit Egg, Martina Höckner, Anita Brandstätter, Mercè Capdevila, Sílvia Atrian, Reinhard Dallinger

Journal:

Year:

2011

Language:

english

File:

PDF, 1.86 MB

english, 2011

33

The individuality of stem cells

Arthur D Lander

Journal:

Year:

2011

Language:

english

File:

PDF, 201 KB

english, 2011

34

Stochastic dynamics and the evolution of mutations in stem cells

David Dingli, Jorge M Pacheco

Journal:

Year:

2011

Language:

english

File:

PDF, 414 KB

english, 2011

35

Stem cell biology and drug discovery

Lee L Rubin, Kelly M Haston

Journal:

Year:

2011

Language:

english

File:

PDF, 662 KB

english, 2011

36

Selecting synaptic partners: GRASPing the role of UNC-6/netrin

QueeLim Ch’ng

Journal:

Year:

2011

Language:

english

File:

PDF, 553 KB

english, 2011

37

Origin and global diversification patterns of tropical rain forests: inferences from a complete genus-level phylogeny of palms

Thomas LP Couvreur, Félix Forest, William J Baker

Journal:

Year:

2011

Language:

english

File:

PDF, 2.46 MB

english, 2011

38

Centriole polarisation to the immunological synapse directs secretion from cytolytic cells of both the innate and adaptive immune systems

Jane C Stinchcombe, Mariolina Salio, Vincenzo Cerundolo, Daniela Pende, Maurizo Arico, Gillian M Griffiths

Journal:

Year:

2011

Language:

english

File:

PDF, 5.87 MB

english, 2011

39

Robustness and fault tolerance make brains harder to study

Shyam Srinivasan, Charles F Stevens

Journal:

Year:

2011

Language:

english

File:

PDF, 431 KB

english, 2011

40

Structural and functional basis for RNA cleavage by Ire1

Alexei V Korennykh, Andrei A Korostelev, Pascal F Egea, Janet Finer-Moore, Robert M Stroud, Chao Zhang, Kevan M Shokat, Peter Walter

Journal:

Year:

2011

Language:

english

File:

PDF, 2.52 MB

english, 2011

41

Cofactor-mediated conformational control in the bifunctional kinase/RNase Ire1

Alexei V Korennykh, Pascal F Egea, Andrei A Korostelev, Janet Finer-Moore, Robert M Stroud, Chao Zhang, Kevan M Shokat, Peter Walter

Journal:

Year:

2011

Language:

english

File:

PDF, 1.38 MB

english, 2011

42

Mouse maternal systemic inflammation at the zygote stage causes blunted cytokine responsiveness in lipopolysaccharide-challenged adult offspring

Charlotte L Williams, Jessica L Teeling, V Hugh Perry, Tom P Fleming

Journal:

Year:

2011

Language:

english

File:

PDF, 1.42 MB

english, 2011

43

Visualization of protein interactions in livingDrosophilaembryos by the bimolecular fluorescence complementation assay

Bruno Hudry, Séverine Viala, Yacine Graba, Samir Merabet

Journal:

Year:

2011

Language:

english

File:

PDF, 1.62 MB

english, 2011

44

Noncoding RNA, antigenic variation, and the virulence genes ofPlasmodium falciparum

A Taylor Bright, Elizabeth A Winzeler

Journal:

Year:

2011

Language:

english

File:

PDF, 969 KB

english, 2011

45

Tracing lineages to uncover neuronal identity

Lia Panman, Thomas Perlmann

Journal:

Year:

2011

Language:

english

File:

PDF, 376 KB

english, 2011

46

The noncoding universe

Kester Jarvis, Miranda Robertson

Journal:

Year:

2011

Language:

english

File:

PDF, 249 KB

english, 2011

47

Identification of specificity determining residues in peptide recognition domains using an information theoretic approach applied to large-scale binding maps

Kevin Y Yip, Lukas Utz, Simon Sitwell, Xihao Hu, Sachdev S Sidhu, Benjamin E Turk, Mark Gerstein, Philip M Kim

Journal:

Year:

2011

Language:

english

File:

PDF, 568 KB

english, 2011

48

Identification and characterization of a set of conserved and new regulators of cytoskeletal organization, cell morphology and migration

Siau Wei Bai, Maria Teresa Herrera-Abreu, Jennifer L Rohn, Victor Racine, Virginia Tajadura, Narendra Suryavanshi, Stephanie Bechtel, Stefan Wiemann, Buzz Baum, Anne J Ridley

Journal:

Year:

2011

Language:

english

File:

PDF, 1.42 MB

english, 2011

49

The taming of an impossible child: a standardized all-in approach to the phylogeny of Hymenoptera using public database sequences

Ralph S Peters, Benjamin Meyer, Lars Krogmann, Janus Borner, Karen Meusemann, Kai Schütte, Oliver Niehuis, Bernhard Misof

Journal:

Year:

2011

Language:

english

File:

PDF, 386 KB

english, 2011

50

Is sex necessary?

Sheng Sun, Joseph Heitman

Journal:

Year:

2011

Language:

english

File:

PDF, 167 KB

english, 2011

51

Origins of cellular geometry

Wallace F Marshall

Journal:

Year:

2011

Language:

english

File:

PDF, 561 KB

english, 2011

52

A novel reporter of notch signalling indicates regulated and random notch activation during vertebrate neurogenesis

Filipe Vilas-Boas, Rita Fior, Jason R Swedlow, Kate G Storey, Domingos Henrique

Journal:

Year:

2011

Language:

english

File:

PDF, 1.03 MB

english, 2011

53

Inferring the Tree of Life: chopping a phylogenomic problem down to size?

Olaf RP Bininda-Emonds

Journal:

Year:

2011

Language:

english

File:

PDF, 278 KB

english, 2011

54

Modularity of gene-regulatory networks revealed in sea-star development

Carmel McDougall, Bernard M Degnan

Journal:

Year:

2011

Language:

english

File:

PDF, 311 KB

english, 2011

55

The conservation and uniqueness of the caspase family in the basal chordate, amphioxus

Liqun Xu, Shaochun Yuan, Jun Li, Jie Ruan, Shengfeng Huang, Manyi Yang, Huiqing Huang, Shangwu Chen, Zhenghua Ren, Anlong Xu

Journal:

Year:

2011

Language:

english

File:

PDF, 1.19 MB

english, 2011

56

The intriguing evolutionary dynamics of plant mitochondrial DNA

Nicolas Galtier

Journal:

Year:

2011

Language:

english

File:

PDF, 93 KB

english, 2011

57

Mobile DNA transposition in somatic cells

Haig H Kazazian

Journal:

Year:

2011

Language:

english

File:

PDF, 108 KB

english, 2011

58

What is the Golgi apparatus, and why are we asking?

Journal:

Year:

2011

Language:

english

File:

PDF, 554 KB

english, 2011

59

Double-strand break repair processes drive evolution of the mitochondrial genome in Arabidopsis

Jaime I Davila, Maria P Arrieta-Montiel, Yashitola Wamboldt, Jun Cao, Joerg Hagmann, Vikas Shedge, Ying-Zhi Xu, Detlef Weigel, Sally A Mackenzie

Journal:

Year:

2011

Language:

english

File:

PDF, 1.08 MB

english, 2011

60

Drosophilainsulin and target of rapamycin (TOR) pathways regulate GSK3 beta activity to control Myc stability and determine Myc expression in vivo

Federica Parisi, Sara Riccardo, Margaret Daniel, Mahesh Saqcena, Nandini Kundu, Annalisa Pession, Daniela Grifoni, Hugo Stocker, Esteban Tabak, Paola Bellosta

Journal:

Year:

2011

Language:

english

File:

PDF, 939 KB

english, 2011

61

Characterization of the axon initial segment (AIS) of motor neurons and identification of a para-AIS and a juxtapara-AIS, organized by protein 4.1B

Amandine Duflocq, Fabrice Chareyre, Marco Giovannini, François Couraud, Marc Davenne

Journal:

Year:

2011

Language:

english

File:

PDF, 2.58 MB

english, 2011

62

Host-parasite relationships in the genome

John FY Brookfield

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Year:

2011

Language:

english

File:

PDF, 90 KB

english, 2011

63

Toward a comprehensive language for biological systems

Journal:

Year:

2011

Language:

english

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PDF, 132 KB

english, 2011

64

Appetite for destruction: the inhibition of glycolysis as a therapy for tuberous sclerosis complex-related tumors

Alfredo Csibi, John Blenis

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Year:

2011

Language:

english

File:

PDF, 2.74 MB

english, 2011

65

The activation mechanism of Irga6, an interferon-inducible GTPase contributing to mouse resistance againstToxoplasma gondii

Nikolaus Pawlowski, Aliaksandr Khaminets, Julia P Hunn, Natasa Papic, Andreas Schmidt, Revathy C Uthaiah, Rita Lange, Gabriela Vopper, Sascha Martens, Eva Wolf, Jonathan C Howard

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Year:

2011

Language:

english

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PDF, 4.72 MB

english, 2011

66

Molecular dynamics simulations and drug discovery

Jacob D Durrant, J Andrew McCammon

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Year:

2011

Language:

english

File:

PDF, 366 KB

english, 2011

67

Proteasome inhibition, the pursuit of new cancer therapeutics, and the adaptor molecule p130Cas

Dharminder Chauhan, Kenneth C Anderson

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Year:

2011

Language:

english

File:

PDF, 128 KB

english, 2011

68

The docking protein p130Cas regulates cell sensitivity to proteasome inhibition

Ming Zhao, Kristiina Vuori

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Year:

2011

Language:

english

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PDF, 954 KB

english, 2011

69

Sumo-dependent substrate targeting of the SUMO protease Ulp1

Zachary C Elmore, Megan Donaher, Brooke C Matson, Helen Murphy, Jason W Westerbeck, Oliver Kerscher

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Year:

2011

Language:

english

File:

PDF, 770 KB

english, 2011

70

Requirement for Pdx1 in specification of latent endocrine progenitors in zebrafish

Robin A Kimmel, Lucas Onder, Armin Wilfinger, Elin Ellertsdottir, Dirk Meyer

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Year:

2011

Language:

english

File:

PDF, 2.33 MB

english, 2011

71

Following the genes: a framework for animal modeling of psychiatric disorders

Kevin J Mitchell, Z Josh Huang, Bita Moghaddam, Akira Sawa

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Year:

2011

Language:

english

File:

PDF, 254 KB

english, 2011

72

Two patients walk into a clinic...a genomics perspective on the future of schizophrenia

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Year:

2011

Language:

english

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PDF, 405 KB

english, 2011

73

Genes, animal models and the current understanding of psychiatric

Penelope Austin

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Year:

2011

Language:

english

File:

PDF, 75 KB

english, 2011

74

How plants cope with temperature stress

Virginia Walbot

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Year:

2011

Language:

english

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PDF, 208 KB

english, 2011

75

Not just another genome

Journal:

Year:

2011

Language:

english

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PDF, 456 KB

english, 2011

76

Clustered ChIP-Seq-defined transcription factor binding sites and histone modifications map distinct classes of regulatory elements

Morten Rye, Pål Sætrom, Tony Håndstad, Finn Drabløs

Journal:

Year:

2011

Language:

english

File:

PDF, 384 KB

english, 2011

77

Motion dazzle and camouflage as distinct anti-predator defenses

Martin Stevens, W Tom L Searle, Jenny E Seymour, Kate LA Marshall, Graeme D Ruxton

Journal:

Year:

2011

Language:

english

File:

PDF, 393 KB

english, 2011

78

Notch1 binds and induces degradation of Snail in hepatocellular carcinoma

Seung-Oe Lim, Hyeon Seop Kim, Xiaoyuan Quan, Sun-Min Ahn, Hongtae Kim, David Hsieh, Je Kyung Seong, Guhung Jung

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Year:

2011

Language:

english

File:

PDF, 768 KB

english, 2011

79

Pit-bull reviewing, the pursuit of perfection and the victims of success

Miranda Robertson

Journal:

Year:

2011

Language:

english

File:

PDF, 86 KB

english, 2011

80

Putting the pH into phosphatidic acid signaling

John JH Shin, Christopher JR Loewen

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Year:

2011

Language:

english

File:

PDF, 248 KB

english, 2011

81

The majority of total nuclear-encoded non-ribosomal RNA in a human cell is 'dark matter' un-annotated RNA

Philipp Kapranov, Georges St Laurent, Tal Raz, Fatih Ozsolak, C Patrick Reynolds, Poul HB Sorensen, Gregory Reaman, Patrice Milos, Robert J Arceci, John F Thompson, Timothy J Triche

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Year:

2011

Language:

english

File:

PDF, 70 KB

english, 2011

82

Multiple origins of endosymbiosis within the Enterobacteriaceae (γ-Proteobacteria): convergence of complex phylogenetic approaches

Filip Husník, Tomáš Chrudimský, Václav Hypša

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Year:

2011

Language:

english

File:

PDF, 2.10 MB

english, 2011

83

Endothelio-hematopoietic relationship: getting closer to the beginnings

Sabrina Gordon-Keylock, Alexander Medvinsky

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Year:

2011

Language:

english

File:

PDF, 125 KB

english, 2011

84

Computational and phylogenetic validation of nematode horizontal gene transfer

Elizabeth H Scholl, David McK Bird

Journal:

Year:

2011

Language:

english

File:

PDF, 361 KB

english, 2011

85

The bending of cell sheets - from folding to rolling

Ray Keller, David Shook

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Year:

2011

Language:

english

File:

PDF, 422 KB

english, 2011

86

Difficult phylogenetic questions: more data, maybe; better methods, certainly

Hervé Philippe, Béatrice Roure

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Year:

2011

Language:

english

File:

PDF, 133 KB

english, 2011

87

Biophysics - whence, whither, wherefore - or Hold that hyphen

Walter B Gratzer

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Year:

2011

Language:

english

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PDF, 254 KB

english, 2011

88

Haploinsufficiency and the sex chromosomes from yeasts to humans

Michaela de Clare, Pınar Pir, Stephen G Oliver

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Year:

2011

Language:

english

File:

PDF, 435 KB

english, 2011

89

Genome-wide assessment of the carriers involved in the cellular uptake of drugs: a model system in yeast

Karin Lanthaler, Elizabeth Bilsland, Paul D Dobson, Harry J Moss, Pınar Pir, Douglas B Kell, Stephen G Oliver

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Year:

2011

Language:

english

File:

PDF, 948 KB

english, 2011

90

Bidirectional remodeling of β1-integrin adhesions during chemotropic regulation of nerve growth

Lucas P Carlstrom, Jacob H Hines, Steven J Henle, John R Henley

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Year:

2011

Language:

english

File:

PDF, 1.73 MB

english, 2011

91

There is more than one way to turn a spherical cellular monolayer inside out: type B embryo inversion inVolvox globator

Stephanie Höhn, Armin Hallmann

Journal:

Year:

2011

Language:

english

File:

PDF, 1.57 MB

english, 2011

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