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Volume 5; Issue 1
Main
BMC Evolutionary Biology
Volume 5; Issue 1
BMC Evolutionary Biology
Volume 5; Issue 1
1
Quasispecies theory in the context of population genetics
Claus O Wilke
Journal:
BMC Evolutionary Biology
Year:
2005
Language:
english
File:
PDF, 329 KB
Your tags:
english, 2005
2
The WRKY transcription factor superfamily: its origin in eukaryotes and expansion in plants
Yuanji Zhang
,
Liangjiang Wang
Journal:
BMC Evolutionary Biology
Year:
2005
Language:
english
File:
PDF, 786 KB
Your tags:
english, 2005
3
Structural similarity of loops in protein families: toward the understanding of protein evolution
Anna R Panchenko
,
Thomas Madej
Journal:
BMC Evolutionary Biology
Year:
2005
Language:
english
File:
PDF, 323 KB
Your tags:
english, 2005
4
Functional evolution of ADAMTS genes: Evidence from analyses of phylogeny and gene organization
Ainsley C Nicholson
,
Shehre-Banoo Malik
,
John M Logsdon
,
Erwin G Van Meir
Journal:
BMC Evolutionary Biology
Year:
2005
Language:
english
File:
PDF, 1.27 MB
Your tags:
english, 2005
5
DNA repeat arrays in chicken and human genomes and the adaptive evolution of avian genome size
Austin L Hughes
,
Helen Piontkivska
Journal:
BMC Evolutionary Biology
Year:
2005
Language:
english
File:
PDF, 235 KB
Your tags:
english, 2005
6
The evolution of the Sin1 gene product, a little known protein implicated in stress responses and type I interferon signaling in vertebrates
Shu-Zong Wang
,
R Michael Roberts
Journal:
BMC Evolutionary Biology
Year:
2005
Language:
english
File:
PDF, 2.30 MB
Your tags:
english, 2005
7
Evolution of the relaxin-like peptide family
Tracey N Wilkinson
,
Terence P Speed
,
Geoffrey W Tregear
,
Ross AD Bathgate
Journal:
BMC Evolutionary Biology
Year:
2005
Language:
english
File:
PDF, 454 KB
Your tags:
english, 2005
8
The architecture of mammalian ribosomal protein promoters
Robert P Perry
Journal:
BMC Evolutionary Biology
Year:
2005
Language:
english
File:
PDF, 2.42 MB
Your tags:
english, 2005
9
Rate variation in parasitic plants: correlated and uncorrelated patterns among plastid genes of different function
Nelson D Young
,
Claude W de Pamphilis
Journal:
BMC Evolutionary Biology
Year:
2005
Language:
english
File:
PDF, 550 KB
Your tags:
english, 2005
10
Out of Tanganyika: Genesis, explosive speciation, key-innovations and phylogeography of the haplochromine cichlid fishes
Walter Salzburger
,
Tanja Mack
,
Erik Verheyen
,
Axel Meyer
Journal:
BMC Evolutionary Biology
Year:
2005
Language:
english
File:
PDF, 2.97 MB
Your tags:
english, 2005
11
Analysis of the humanAluYe lineage
Abdel-Halim Salem
,
David A Ray
,
Dale J Hedges
,
Jerzy Jurka
,
Mark A Batzer
Journal:
BMC Evolutionary Biology
Year:
2005
Language:
english
File:
PDF, 549 KB
Your tags:
english, 2005
12
Consequences of the historical demography on the global population structure of two highly migratory cosmopolitan marine fishes: the yellowfin tuna (Thunnus albacares) and the skipjack tuna (Katsuwonus pelamis)
Bert Ely
,
Jordi Viñas
,
Jaime R Alvarado Bremer
,
Donna Black
,
Luciano Lucas
,
Kelly Covello
,
Alexis V Labrie
,
Eric Thelen
Journal:
BMC Evolutionary Biology
Year:
2005
Language:
english
File:
PDF, 295 KB
Your tags:
english, 2005
13
Rooting a phylogenetic tree with nonreversible substitution models
Von Bing Yap
,
Terry Speed
Journal:
BMC Evolutionary Biology
Year:
2005
Language:
english
File:
PDF, 266 KB
Your tags:
english, 2005
14
TheSinbadretrotransposon from the genome of the human blood fluke,Schistosoma mansoni, and the distribution of relatedPao-like elements
Claudia S Copeland
,
Victoria H Mann
,
Maria E Morales
,
Bernd H Kalinna
,
Paul J Brindley
Journal:
BMC Evolutionary Biology
Year:
2005
Language:
english
File:
PDF, 1.39 MB
Your tags:
english, 2005
15
Using equilibrium frequencies in models of sequence evolution
Bjarne Knudsen
,
Michael M Miyamoto
Journal:
BMC Evolutionary Biology
Year:
2005
Language:
english
File:
PDF, 230 KB
Your tags:
english, 2005
16
Phylogenomic approaches to common problems encountered in the analysis of low copy repeats: The sulfotransferase 1A gene family example
Michael E Bradley
,
Steven A Benner
Journal:
BMC Evolutionary Biology
Year:
2005
Language:
english
File:
PDF, 710 KB
Your tags:
english, 2005
17
Comparative analysis of theSaccharomyces cerevisiaeandCaenorhabditis elegansprotein interaction networks
Ino Agrafioti
,
Jonathan Swire
,
James Abbott
,
Derek Huntley
,
Sarah Butcher
,
Michael PH Stumpf
Journal:
BMC Evolutionary Biology
Year:
2005
Language:
english
File:
PDF, 920 KB
Your tags:
english, 2005
18
Evolutionary cores of domain co-occurrence networks
Stefan Wuchty
,
Eivind Almaas
Journal:
BMC Evolutionary Biology
Year:
2005
Language:
english
File:
PDF, 1.04 MB
Your tags:
english, 2005
19
Shooting darts: co-evolution and counter-adaptation in hermaphroditic snails
Joris M Koene
,
Hinrich Schulenburg
Journal:
BMC Evolutionary Biology
Year:
2005
Language:
english
File:
PDF, 939 KB
Your tags:
english, 2005
20
Phylogeny and antiquity of M macrohaplogroup inferred from complete mt DNA sequence of Indian specific lineages
Revathi Rajkumar
,
Jheelam Banerjee
,
Hima Bindu Gunturi
,
R Trivedi
,
VK Kashyap
Journal:
BMC Evolutionary Biology
Year:
2005
Language:
english
File:
PDF, 299 KB
Your tags:
english, 2005
21
Deduction of probable events of lateral gene transfer through comparison of phylogenetic trees by recursive consolidation and rearrangement
Dave MacLeod
,
Robert L Charlebois
,
Ford Doolittle
,
Eric Bapteste
Journal:
BMC Evolutionary Biology
Year:
2005
Language:
english
File:
PDF, 710 KB
Your tags:
english, 2005
22
Subfunctionalization of duplicated genes as a transition state to neofunctionalization
Shruti Rastogi
,
David A Liberles
Journal:
BMC Evolutionary Biology
Year:
2005
Language:
english
File:
PDF, 399 KB
Your tags:
english, 2005
23
Mitochondrial haplotype diversity in the tortoise speciesTestudo graecafrom North Africa and the Middle East
Antoinette C van der Kuyl
,
Donato LP Ballasina
,
Fokla Zorgdrager
Journal:
BMC Evolutionary Biology
Year:
2005
Language:
english
File:
PDF, 274 KB
Your tags:
english, 2005
24
The genetics of ray pattern variation inCaenorhabditis briggsae
Scott Everet Baird
,
Cynthia R Davidson
,
Justin C Bohrer
Journal:
BMC Evolutionary Biology
Year:
2005
Language:
english
File:
PDF, 455 KB
Your tags:
english, 2005
25
Diaspora, a large family ofTy3-gypsyretrotransposons inGlycine max, is an envelope-less member of an endogenous plant retrovirus lineage
Sho T Yano
,
Bahman Panbehi
,
Arpita Das
,
Howard M Laten
Journal:
BMC Evolutionary Biology
Year:
2005
Language:
english
File:
PDF, 401 KB
Your tags:
english, 2005
26
The integrins of the urochordateCiona intestinalisprovide novel insights into the molecular evolution of the vertebrate integrin family
Richard Ewan
,
Julie Huxley-Jones
,
Paul A Mould
,
Martin J Humphries
,
David L Robertson
,
Raymond P Boot-Handford
Journal:
BMC Evolutionary Biology
Year:
2005
Language:
english
File:
PDF, 6.22 MB
Your tags:
english, 2005
27
The complexity of selection at the major primate β-defensin locus
Colin AM Semple
,
Alison Maxwell
,
Philippe Gautier
,
Fiona M Kilanowski
,
Hayden Eastwood
,
Perdita E Barran
,
Julia R Dorin
Journal:
BMC Evolutionary Biology
Year:
2005
Language:
english
File:
PDF, 560 KB
Your tags:
english, 2005
28
Do orthologous gene phylogenies really support tree-thinking?
E Bapteste
,
E Susko
,
J Leigh
,
D MacLeod
,
RL Charlebois
,
WF Doolittle
Journal:
BMC Evolutionary Biology
Year:
2005
Language:
english
File:
PDF, 724 KB
Your tags:
english, 2005
29
Automatic selection of representative proteins for bacterial phylogeny
Marshall Bern
,
David Goldberg
Journal:
BMC Evolutionary Biology
Year:
2005
Language:
english
File:
PDF, 386 KB
Your tags:
english, 2005
30
Evolutionary history ofWolbachiainfections in the fire antSolenopsis invicta
Michael E Ahrens
,
Dewayne Shoemaker
Journal:
BMC Evolutionary Biology
Year:
2005
Language:
english
File:
PDF, 894 KB
Your tags:
english, 2005
31
An emerging phylogenetic core of Archaea: phylogenies of transcription and translation machineries converge following addition of new genome sequences
Céline Brochier
,
Patrick Forterre
,
Simonetta Gribaldo
Journal:
BMC Evolutionary Biology
Year:
2005
Language:
english
File:
PDF, 287 KB
Your tags:
english, 2005
32
Mating-induced reduction in accessory reproductive organ size in the stalk-eyed flyCyrtodiopsis dalmanni
David W Rogers
,
Tracey Chapman
,
Kevin Fowler
,
Andrew Pomiankowski
Journal:
BMC Evolutionary Biology
Year:
2005
Language:
english
File:
PDF, 395 KB
Your tags:
english, 2005
33
Discovery of the photosynthetic relatives of the "Maltese mushroom"Cynomorium
Daniel L Nickrent
,
Joshua P Der
,
Frank E Anderson
Journal:
BMC Evolutionary Biology
Year:
2005
Language:
english
File:
PDF, 511 KB
Your tags:
english, 2005
34
Conservation of pregnancy-specific glycoprotein (PSG) N domains following independent expansions of the gene families in rodents and primates
Andrew S McLellan
,
Wolfgang Zimmermann
,
Tom Moore
Journal:
BMC Evolutionary Biology
Year:
2005
Language:
english
File:
PDF, 680 KB
Your tags:
english, 2005
35
Climate change and recent genetic flux in populations ofDrosophila robusta
Max Levitan
,
William J Etges
Journal:
BMC Evolutionary Biology
Year:
2005
Language:
english
File:
PDF, 2.62 MB
Your tags:
english, 2005
36
Diverse spatial, temporal, and sexual expression of recently duplicated androgen-binding protein genes inMus musculus
Christina M Laukaitis
,
Stephen R Dlouhy
,
Richard D Emes
,
Chris P Ponting
,
Robert C Karn
Journal:
BMC Evolutionary Biology
Year:
2005
Language:
english
File:
PDF, 844 KB
Your tags:
english, 2005
37
Genome wide survey of G protein-coupled receptors inTetraodon nigroviridis
Raghu Prasad Rao Metpally
,
Ramanathan Sowdhamini
Journal:
BMC Evolutionary Biology
Year:
2005
Language:
english
File:
PDF, 395 KB
Your tags:
english, 2005
38
Evolution of a microbial nitrilase gene family: a comparative and environmental genomics study
Mircea Podar
,
Jonathan R Eads
,
Toby H Richardson
Journal:
BMC Evolutionary Biology
Year:
2005
Language:
english
File:
PDF, 645 KB
Your tags:
english, 2005
39
The genomic environment around the Aromatase gene: evolutionary insights
L Filipe C Castro
,
Miguel M Santos
,
Maria A Reis-Henriques
Journal:
BMC Evolutionary Biology
Year:
2005
Language:
english
File:
PDF, 1.38 MB
Your tags:
english, 2005
40
An ancient spliceosomal intron in the ribosomal protein L7a gene (Rpl7a) ofGiardia lamblia
Anthony G Russell
,
Timothy E Shutt
,
Russell F Watkins
,
Michael W Gray
Journal:
BMC Evolutionary Biology
Year:
2005
Language:
english
File:
PDF, 339 KB
Your tags:
english, 2005
41
Ribosomal intergenic spacer (IGS) length variation across the Drosophilinae (Diptera: Drosophilidae)
Mariana Mateos
,
Therese A Markow
Journal:
BMC Evolutionary Biology
Year:
2005
Language:
english
File:
PDF, 359 KB
Your tags:
english, 2005
42
A comparison of variation between a MHC pseudogene and microsatellite loci of the little greenbul (Andropadus virens)
Andres Aguilar
,
Thomas B Smith
,
Robert K Wayne
Journal:
BMC Evolutionary Biology
Year:
2005
Language:
english
File:
PDF, 278 KB
Your tags:
english, 2005
43
Phylogenetic analysis of eIF4E-family members
Bhavesh Joshi
,
Kibwe Lee
,
Dennis L Maeder
,
Rosemary Jagus
Journal:
BMC Evolutionary Biology
Year:
2005
Language:
english
File:
PDF, 680 KB
Your tags:
english, 2005
44
Late Quaternary loss of genetic diversity in muskox (Ovibos)
Ross DE MacPhee
,
Alexei N Tikhonov
,
Dick Mol
,
Alex D Greenwood
Journal:
BMC Evolutionary Biology
Year:
2005
Language:
english
File:
PDF, 697 KB
Your tags:
english, 2005
45
Validating viral quasispecies with digital organisms: a re-examination of the critical mutation rate
Iñaki Comas
,
Andrés Moya
,
Fernando González-Candelas
Journal:
BMC Evolutionary Biology
Year:
2005
Language:
english
File:
PDF, 300 KB
Your tags:
english, 2005
46
Heterotachy and long-branch attraction in phylogenetics
Hervé Philippe
,
Yan Zhou
,
Henner Brinkmann
,
Nicolas Rodrigue
,
Frédéric Delsuc
Journal:
BMC Evolutionary Biology
Year:
2005
Language:
english
File:
PDF, 580 KB
Your tags:
english, 2005
47
TrackingAluevolution in New World primates
David A Ray
,
Mark A Batzer
Journal:
BMC Evolutionary Biology
Year:
2005
Language:
english
File:
PDF, 672 KB
Your tags:
english, 2005
48
Evidence of recombination among early-vaccination era measles virus strains
Mikkel H Schierup
,
Carl H Mordhorst
,
Claude P Muller
,
Laurids S Christensen
Journal:
BMC Evolutionary Biology
Year:
2005
Language:
english
File:
PDF, 541 KB
Your tags:
english, 2005
49
The key role for local base order in the generation of multiple forms of China HIV-1 B'/C intersubtype recombinants
Chi-Yu Zhang
,
Ji-Fu Wei
,
Shao-Heng He
Journal:
BMC Evolutionary Biology
Year:
2005
Language:
english
File:
PDF, 344 KB
Your tags:
english, 2005
50
MammalianBEX,WEXandGASPgenes: Coding and non-coding chimaerism sustained by gene conversion events
Eitan E Winter
,
Chris P Ponting
Journal:
BMC Evolutionary Biology
Year:
2005
Language:
english
File:
PDF, 1.27 MB
Your tags:
english, 2005
51
Evolutionary, structural and functional relationships revealed by comparative analysis of syntenic genes in Rhizobiales
Gabriela Guerrero
,
Humberto Peralta
,
Alejandro Aguilar
,
Rafael Díaz
,
Miguel Angel Villalobos
,
Arturo Medrano-Soto
,
Jaime Mora
Journal:
BMC Evolutionary Biology
Year:
2005
Language:
english
File:
PDF, 1.94 MB
Your tags:
english, 2005
52
Lineage-specific variations of congruent evolution among DNA sequences from three genomes, and relaxed selective constraints onrbcL inCryptomonas(Cryptophyceae)
Kerstin Hoef-Emden
,
Hoang-Dung Tran
,
Michael Melkonian
Journal:
BMC Evolutionary Biology
Year:
2005
Language:
english
File:
PDF, 357 KB
Your tags:
english, 2005
53
Comparative genomics ofThermus thermophilusandDeinococcus radiodurans: divergent routes of adaptation to thermophily and radiation resistance
Marina V Omelchenko
,
Yuri I Wolf
,
Elena K Gaidamakova
,
Vera Y Matrosova
,
Alexander Vasilenko
,
Min Zhai
,
Michael J Daly
,
Eugene V Koonin
,
Kira S Makarova
Journal:
BMC Evolutionary Biology
Year:
2005
Language:
english
File:
PDF, 504 KB
Your tags:
english, 2005
54
The efficiency of different search strategies in estimating parsimony jackknife, bootstrap, and Bremer support
Kai F Müller
Journal:
BMC Evolutionary Biology
Year:
2005
Language:
english
File:
PDF, 364 KB
Your tags:
english, 2005
55
Why do snails have hairs? A Bayesian inference of character evolution
Markus Pfenninger
,
Magda Hrabáková
,
Dirk Steinke
,
Aline Dèpraz
Journal:
BMC Evolutionary Biology
Year:
2005
Language:
english
File:
PDF, 583 KB
Your tags:
english, 2005
56
Inference of demographic history from genealogical trees using reversible jump Markov chain Monte Carlo
Rainer Opgen-Rhein
,
Ludwig Fahrmeir
,
Korbinian Strimmer
Journal:
BMC Evolutionary Biology
Year:
2005
Language:
english
File:
PDF, 378 KB
Your tags:
english, 2005
57
Avoid, attack or do both? Behavioral and physiological adaptations in natural enemies faced with novel hosts
Corinne Vacher
,
Sam P Brown
,
Michael E Hochberg
Journal:
BMC Evolutionary Biology
Year:
2005
Language:
english
File:
PDF, 326 KB
Your tags:
english, 2005
58
Genetic covariance between indices of body condition and immunocompetence in a passerine bird
Deborah J Gleeson
,
Mark W Blows
,
Ian PF Owens
Journal:
BMC Evolutionary Biology
Year:
2005
Language:
english
File:
PDF, 323 KB
Your tags:
english, 2005
59
Unusual linkage patterns of ligands and their cognate receptors indicate a novel reason for non-random gene order in the human genome
Laurence D Hurst
,
Martin J Lercher
Journal:
BMC Evolutionary Biology
Year:
2005
Language:
english
File:
PDF, 309 KB
Your tags:
english, 2005
60
Exploration of phylogenetic data using a global sequence analysis method
Charles Chapus
,
Christine Dufraigne
,
Scott Edwards
,
Alain Giron
,
Bernard Fertil
,
Patrick Deschavanne
Journal:
BMC Evolutionary Biology
Year:
2005
Language:
english
File:
PDF, 2.77 MB
Your tags:
english, 2005
61
Evolution of virulence: coinfection and propagule production in spore-producing parasites
Curtis M Lively
Journal:
BMC Evolutionary Biology
Year:
2005
Language:
english
File:
PDF, 357 KB
Your tags:
english, 2005
62
Testing for adaptive evolution of the female reproductive protein ZPC in mammals, birds and fishes reveals problems with the M7-M8 likelihood ratio test
Sofia Berlin
,
Nick GC Smith
Journal:
BMC Evolutionary Biology
Year:
2005
Language:
english
File:
PDF, 306 KB
Your tags:
english, 2005
63
Coiled-coil protein composition of 22 proteomes – differences and common themes in subcellular infrastructure and traffic control
Annkatrin Rose
,
Shannon J Schraegle
,
Eric A Stahlberg
,
Iris Meier
Journal:
BMC Evolutionary Biology
Year:
2005
Language:
english
File:
PDF, 549 KB
Your tags:
english, 2005
64
TheEnhancer of splitandAchaete-Scutecomplexes of Drosophilids derived from simple ur-complexes preserved in mosquito and honeybee
Rebekka Schlatter
,
Dieter Maier
Journal:
BMC Evolutionary Biology
Year:
2005
Language:
english
File:
PDF, 625 KB
Your tags:
english, 2005
65
Phylogenetic analyses suggest reverse splicing spread of group I introns in fungal ribosomal DNA
Debashish Bhattacharya
,
Valérie Reeb
,
Dawn M Simon
,
François Lutzoni
Journal:
BMC Evolutionary Biology
Year:
2005
Language:
english
File:
PDF, 527 KB
Your tags:
english, 2005
66
Evolution and origin of merlin, the product of theNeurofibromatosis type 2(NF2) tumor-suppressor gene
Kseniya Golovnina
,
Alexander Blinov
,
Elena M Akhmametyeva
,
Leonid V Omelyanchuk
,
Long-Sheng Chang
Journal:
BMC Evolutionary Biology
Year:
2005
Language:
english
File:
PDF, 1.40 MB
Your tags:
english, 2005
67
Genetics and geometry of canalization and developmental stability inDrosophila subobscura
Mauro Santos
,
Fernández Pedro Iriarte
,
Walkiria Céspedes
Journal:
BMC Evolutionary Biology
Year:
2005
Language:
english
File:
PDF, 1.65 MB
Your tags:
english, 2005
68
Molecular dating of caprines using ancient DNA sequences ofMyotragus balearicus, an extinct endemic Balearic mammal
Carles Lalueza-Fox
,
Jose Castresana
,
Lourdes Sampietro
,
Tomàs Marquès-Bonet
,
Josep Antoni Alcover
,
Jaume Bertranpetit
Journal:
BMC Evolutionary Biology
Year:
2005
Language:
english
File:
PDF, 311 KB
Your tags:
english, 2005
69
The largest subunit of RNA polymerase II from the Glaucocystophyta: functional constraint and short-branch exclusion in deep eukaryotic phylogeny
John W Stiller
,
Leslie Harrell
Journal:
BMC Evolutionary Biology
Year:
2005
Language:
english
File:
PDF, 1.24 MB
Your tags:
english, 2005
70
Genome-wide comparative analysis of theIQDgene families inArabidopsis thalianaandOryza sativa
Steffen Abel
,
Tatyana Savchenko
,
Maggie Levy
Journal:
BMC Evolutionary Biology
Year:
2005
Language:
english
File:
PDF, 2.71 MB
Your tags:
english, 2005
71
Multiple major increases and decreases in mitochondrial substitution rates in the plant family Geraniaceae
Christopher L Parkinson
,
Jeffrey P Mower
,
Yin-Long Qiu
,
Andrew J Shirk
,
Keming Song
,
Nelson D Young
,
Claude W de Pamphilis
,
Jeffrey D Palmer
Journal:
BMC Evolutionary Biology
Year:
2005
Language:
english
File:
PDF, 384 KB
Your tags:
english, 2005
72
Bayesian and maximum likelihood phylogenetic analyses of protein sequence data under relative branch-length differences and model violation
Jessica C Mar
,
Timothy J Harlow
,
Mark A Ragan
Journal:
BMC Evolutionary Biology
Year:
2005
Language:
english
File:
PDF, 510 KB
Your tags:
english, 2005
73
Phenotypic error threshold; additivity and epistasis in RNA evolution
Nobuto Takeuchi
,
Petrus H Poorthuis
,
Paulien Hogeweg
Journal:
BMC Evolutionary Biology
Year:
2005
Language:
english
File:
PDF, 335 KB
Your tags:
english, 2005
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