Volume 4

F1000Research

Volume 4

1

Differential analyses for RNA-seq: transcript-level estimates improve gene-level inferences

Soneson, Charlotte, Love, Michael I., Robinson, Mark D.

Journal:

Year:

2016

Language:

english

File:

PDF, 1.88 MB

english, 2016

2

Regulation of IL-10 and IL-12 production and function in macrophages and dendritic cells

Ma, Xiaojing, Yan, Wenjun, Zheng, Hua, Du, Qinglin, Zhang, Lixing, Ban, Yi, Li, Na, Wei, Fang

Journal:

Year:

2015

Language:

english

File:

PDF, 2.08 MB

english, 2015

3

HiCUP: pipeline for mapping and processing Hi-C data

Wingett, Steven, Ewels, Philip, Furlan-Magaril, Mayra, Nagano, Takashi, Schoenfelder, Stefan, Fraser, Peter, Andrews, Simon

Journal:

Year:

2015

Language:

english

File:

PDF, 1.22 MB

english, 2015

4

RNA-Seq workflow: gene-level exploratory analysis and differential expression

Love, Michael I., Anders, Simon, Kim, Vladislav, Huber, Wolfgang

Journal:

Year:

2015

Language:

english

File:

PDF, 8.42 MB

english, 2015

5

Villain of Molecular Biology: Why are we not reproducible in research?

Bhardwaj, Vikash

Journal:

Year:

2015

Language:

english

File:

PDF, 912 KB

english, 2015

6

Machine learning models identify molecules active against the Ebola virus in vitro

Ekins, Sean, Freundlich, Joel S., Clark, Alex M., Anantpadma, Manu, Davey, Robert A., Madrid, Peter

Journal:

Year:

2016

Language:

english

File:

PDF, 3.15 MB

english, 2016

7

Cannabis microbiome sequencing reveals several mycotoxic fungi native to dispensary grade Cannabis flowers

McKernan, Kevin, Spangler, Jessica, Zhang, Lei, Tadigotla, Vasisht, Helbert, Yvonne, Foss, Theodore, Smith, Douglas R.

Journal:

Year:

2016

Language:

english

File:

PDF, 5.14 MB

english, 2016

8

MinION Analysis and Reference Consortium: Phase 1 data release and analysis

Ip, Camilla L.C., Loose, Matthew, Tyson, John R., de Cesare, Mariateresa, Brown, Bonnie L., Jain, Miten, Leggett, Richard M., Eccles, David A., Zalunin, Vadim, Urban, John M., Piazza, Paolo, Bowden, R

Journal:

Year:

2015

Language:

english

File:

PDF, 20.41 MB

english, 2015

9

Metagenomic Chromosome Conformation Capture (3C): techniques, applications, and challenges

Liu, Michael, Darling, Aaron

Journal:

Year:

2015

Language:

english

File:

PDF, 2.11 MB

english, 2015

10

Null hypothesis significance testing: a short tutorial

Journal:

Year:

2016

Language:

english

File:

PDF, 1.69 MB

english, 2016

11

Capsaicin from chili (Capsicum spp.) inhibits vascular smooth muscle cell proliferation

Liu, Rongxia, Heiss, Elke H., Guo, Dean, Dirsch, Verena M., Atanasov, Atanas G.

Journal:

Year:

2015

Language:

english

File:

PDF, 965 KB

english, 2015

12

Understanding carbon regulation in aquatic systems - Bacteriophages as a model

Sanmukh, Swapnil, Khairnar, Krishna, Paunikar, Waman, Lokhande, Satish

Journal:

Year:

2015

Language:

english

File:

PDF, 1.76 MB

english, 2015

13

The dorsal posterior insula is not an island in pain but subserves a fundamental role - Response to: “Evidence against pain specificity in the dorsal posterior insula” by Davis et al.

Segerdahl, Andrew R., Mezue, Melvin, Okell, Thomas W., Farrar, John T., Tracey, Irene

Journal:

Year:

2015

Language:

english

File:

PDF, 842 KB

english, 2015

14

Prediction of multi-drug resistance transporters using a novel sequence analysis method

McDermott, Jason E., Bruillard, Paul, Overall, Christopher C., Gosink, Luke, Lindemann, Stephen R.

Journal:

Year:

2015

Language:

english

File:

PDF, 4.37 MB

english, 2015

15

Computer-aided drug discovery

Bajorath, Jürgen

Journal:

Year:

2015

File:

PDF, 1.75 MB

2015

16

I drink for my liver, Doc: emerging evidence that coffee prevents cirrhosis

Feld, Jordan J., Lavoie, Élise G., Fausther, Michel, Dranoff, Jonathan A.

Journal:

Year:

2015

Language:

english

File:

PDF, 574 KB

english, 2015

17

The role of new echocardiographic techniques in athlete’s heart

D'Andrea, Antonello, Bossone, Eduardo, Radmilovic, Juri, Caso, Pio, Calabrò, Raffaele, Russo, Maria Giovanna, Galderisi, Maurizio

Journal:

Year:

2015

Language:

english

File:

PDF, 1.66 MB

english, 2015

18

Nelfinavir and other protease inhibitors in cancer: mechanisms involved in anticancer activity

Journal:

Year:

2015

Language:

english

File:

PDF, 1.47 MB

english, 2015

19

The therapeutic potential of genome editing for β-thalassemia

Glaser, Astrid, McColl, Bradley, Vadolas, Jim

Journal:

Year:

2015

Language:

english

File:

PDF, 1.27 MB

english, 2015

20

Portrayed emotions in the movie "Forrest Gump"

Labs, Annika, Reich, Theresa, Schulenburg, Helene, Boennen, Manuel, Mareike, Gehrke, Golz, Madleen, Hartigs, Benita, Hoffmann, Nico, Keil, Sebastian, Perlow, Malú, Peukmann, Anne Katrin, Rabe, Lea Noe

Journal:

Year:

2015

Language:

english

File:

PDF, 2.15 MB

english, 2015

21

Recent advances in understanding of chronic kidney disease

Yamaguchi, Junna, Tanaka, Tetsuhiro, Nangaku, Masaomi

Journal:

Year:

2015

Language:

english

File:

PDF, 1.11 MB

english, 2015

22

A Case Study of the Impediments to the Commercialization of Research at the University of Kentucky

Vanderford, Nathan L., Marcinkowski, Elizabeth

Journal:

Year:

2015

Language:

english

File:

PDF, 931 KB

english, 2015

23

Quantification of polysaccharides fixed to Gram stained slides using lactophenol cotton blue and digital image processing

Ericksen, Bryan

Journal:

Year:

2017

Language:

english

File:

PDF, 1.77 MB

english, 2017

24

A Case Study of the Impediments to the Commercialization of Research at the University of Kentucky

Vanderford, Nathan L., Marcinkowski, Elizabeth

Journal:

Year:

2015

File:

PDF, 931 KB

2015

25

Biomarkers and recent advances in the management and therapy of sickle cell disease

Telen, Marilyn J.

Journal:

Year:

2015

Language:

english

File:

PDF, 959 KB

english, 2015

26

A home-based comprehensive care model in patients with Multiple Sclerosis: A study pre-protocol

Young, Lufei, Healey, Kathleen, Charlton, Mary, Schmid, Kendra, Zabad, Rana, Wester, Rebecca

Journal:

Year:

2015

File:

PDF, 1.13 MB

2015

27

Transgenic supplementation of SIRT1 fails to alleviate acute loss of nigrostriatal dopamine neurons and gliosis in a mouse model of MPTP-induced parkinsonism

Kitao, Yasuko, Ageta-Ishihara, Natsumi, Takahashi, Ryosuke, Kinoshita, Makoto, Hori, Osamu

Journal:

Year:

2015

Language:

english

File:

PDF, 3.44 MB

english, 2015

28

BioShaDock: a community driven bioinformatics shared Docker-based tools registry

Moreews, François, Sallou, Olivier, Ménager, Hervé, Le bras, Yvan, Monjeaud, Cyril, Blanchet, Christophe, Collin, Olivier

Journal:

Year:

2015

Language:

english

File:

PDF, 3.76 MB

english, 2015

29

Biomarkers and recent advances in the management and therapy of sickle cell disease

Telen, Marilyn J.

Journal:

Year:

2015

File:

PDF, 959 KB

2015

30

Neutrophil Lymphocyte Ratio as a predictor of systemic inflammation - A cross-sectional study in a pre-admission setting.

Venkatraghavan, Lashmi, Tan, Tze Ping, Mehta, Jigesh, Arekapudi, Anil, Govindarajulu, Arun, Siu, Eric

Journal:

Year:

2015

File:

PDF, 611 KB

2015

31

Transgenic supplementation of SIRT1 fails to alleviate acute loss of nigrostriatal dopamine neurons and gliosis in a mouse model of MPTP-induced parkinsonism

Kitao, Yasuko, Ageta-Ishihara, Natsumi, Takahashi, Ryosuke, Kinoshita, Makoto, Hori, Osamu

Journal:

Year:

2015

File:

PDF, 3.44 MB

2015

32

BioShaDock: a community driven bioinformatics shared Docker-based tools registry

Moreews, François, Sallou, Olivier, Ménager, Hervé, Le bras, Yvan, Monjeaud, Cyril, Blanchet, Christophe, Collin, Olivier

Journal:

Year:

2015

File:

PDF, 3.76 MB

2015

33

Creating 3D visualizations of MRI data: A brief guide

Madan, Christopher R.

Journal:

Year:

2015

Language:

english

File:

PDF, 8.89 MB

english, 2015

34

Nutrition transition in South Asia: the emergence of non-communicable chronic diseases

Bishwajit, Ghose

Journal:

Year:

2015

Language:

english

File:

PDF, 1.83 MB

english, 2015

35

Mitochondrial DNA Damage and Diseases

Singh, Gyanesh, Pachouri, U C, Khaidem, Devika Chanu, Kundu, Aman, Chopra, Chirag, Singh, Pushplata

Journal:

Year:

2015

Language:

english

File:

PDF, 888 KB

english, 2015

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