Volume 1

Scientific Data

Volume 1

1

Direct infusion mass spectrometry metabolomics dataset: a benchmark for data processing and quality control

Kirwan, Jennifer A, Weber, Ralf J M, Broadhurst, David I, Viant, Mark R

Journal:

Scientific Data

Year:

2014

Language:

english

File:

PDF, 597 KB

english, 2014

2

Comprehensive analysis of the venom gland transcriptome of the spider Dolomedes fimbriatus

Kozlov, Sergey A., Lazarev, Vassili N., Kostryukova, Elena S., Selezneva, Oksana V., Ospanova, Elena A., Alexeev, Dmitry G., Govorun, Vadim M., Grishin, Eugene V.

Journal:

Scientific Data

Year:

2014

Language:

english

File:

PDF, 166 KB

english, 2014

3

Transcriptomic profiling of rat liver samples in a comprehensive study design by RNA-Seq

Gong, Binsheng, Wang, Charles, Su, Zhenqiang, Hong, Huixiao, Thierry-Mieg, Jean, Thierry-Mieg, Danielle, Shi, Leming, Auerbach, Scott S., Tong, Weida, Xu, Joshua

Journal:

Scientific Data

Year:

2014

Language:

english

File:

PDF, 574 KB

english, 2014

4

A comprehensive collection of systems biology data characterizing the host response to viral infection

Aevermann, Brian D., Pickett, Brett E., Kumar, Sanjeev, Klem, Edward B., Agnihothram, Sudhakar, Askovich, Peter S., Bankhead, Armand, Bolles, Meagen, Carter, Victoria, Chang, Jean, Clauss, Therese R.W

Journal:

Scientific Data

Year:

2014

Language:

english

File:

PDF, 733 KB

english, 2014

5

Long-read, whole-genome shotgun sequence data for five model organisms

Kim, Kristi E, Peluso, Paul, Babayan, Primo, Yeadon, P. Jane, Yu, Charles, Fisher, William W, Chin, Chen-Shan, Rapicavoli, Nicole A, Rank, David R, Li, Joachim, Catcheside, David E. A, Celniker, Susan

Journal:

Scientific Data

Year:

2014

Language:

english

File:

PDF, 343 KB

english, 2014

6

Simplified data access on human skeletal muscle transcriptome responses to differentiated exercise

Vissing, Kristian, Schjerling, Peter

Journal:

Scientific Data

Year:

2014

Language:

english

File:

PDF, 1.29 MB

english, 2014

7

A repository of assays to quantify 10,000 human proteins by SWATH-MS

Rosenberger, George, Koh, Ching Chiek, Guo, Tiannan, Röst, Hannes L., Kouvonen, Petri, Collins, Ben C., Heusel, Moritz, Liu, Yansheng, Caron, Etienne, Vichalkovski, Anton, Faini, Marco, Schubert, Olga

Journal:

Scientific Data

Year:

2014

Language:

english

File:

PDF, 957 KB

english, 2014

8

Building the graph of medicine from millions of clinical narratives

Finlayson, Samuel G., LePendu, Paea, Shah, Nigam H.

Journal:

Scientific Data

Year:

2014

Language:

english

File:

PDF, 477 KB

english, 2014

9

An open science resource for establishing reliability and reproducibility in functional connectomics

Zuo, Xi-Nian, Anderson, Jeffrey S, Bellec, Pierre, Birn, Rasmus M, Biswal, Bharat B, Blautzik, Janusch, Breitner, John C.S, Buckner, Randy L, Calhoun, Vince D, Castellanos, F. Xavier, Chen, Antao, Che

Journal:

Scientific Data

Year:

2014

Language:

english

File:

PDF, 1.20 MB

english, 2014

10

Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies

Cowley, Glenn S, Weir, Barbara A, Vazquez, Francisca, Tamayo, Pablo, Scott, Justine A, Rusin, Scott, East-Seletsky, Alexandra, Ali, Levi D, Gerath, William FJ, Pantel, Sarah E, Lizotte, Patrick H, Jia

Journal:

Scientific Data

Year:

2014

Language:

english

File:

PDF, 668 KB

english, 2014

11

Electromyography data for non-invasive naturally-controlled robotic hand prostheses

Atzori, Manfredo, Gijsberts, Arjan, Castellini, Claudio, Caputo, Barbara, Hager, Anne-Gabrielle Mittaz, Elsig, Simone, Giatsidis, Giorgio, Bassetto, Franco, Müller, Henning

Journal:

Scientific Data

Year:

2014

Language:

english

File:

PDF, 1.04 MB

english, 2014

12

Metabolic differences in ripening of Solanum lycopersicum ‘Ailsa Craig’ and three monogenic mutants

Beisken, Stephan, Earll, Mark, Baxter, Charles, Portwood, David, Ament, Zsuzsanna, Kende, Aniko, Hodgman, Charlie, Seymour, Graham, Smith, Rebecca, Fraser, Paul, Seymour, Mark, Salek, Reza M., Steinbe

Journal:

Scientific Data

Year:

2014

Language:

english

File:

PDF, 389 KB

english, 2014

13

Flow-dependent regulation of genome-wide mRNA and microRNA expression in endothelial cells in vivo

Kumar, Sandeep, Kim, Chan Woo, Son, Dong Ju, Ni, Chih Wen, Jo, Hanjoong

Journal:

Scientific Data

Year:

2014

Language:

english

File:

PDF, 2.07 MB

english, 2014

14

DNA methylation temporal profiling following peripheral versus central nervous system axotomy

Lindner, Ricco, Puttagunta, Radhika, Nguyen, Tuan, Di Giovanni, Simone

Journal:

Scientific Data

Year:

2014

Language:

english

File:

PDF, 1.28 MB

english, 2014

15

Reliability of brain volume measurements: A test-retest dataset

Maclaren, Julian, Han, Zhaoying, Vos, Sjoerd B, Fischbein, Nancy, Bammer, Roland

Journal:

Scientific Data

Year:

2014

Language:

english

File:

PDF, 4.18 MB

english, 2014

16

microclim: Global estimates of hourly microclimate based on long-term monthly climate averages

Kearney, Michael R, Isaac, Andrew P, Porter, Warren P

Journal:

Scientific Data

Year:

2014

Language:

english

File:

PDF, 428 KB

english, 2014

17

Global integrated drought monitoring and prediction system

Hao, Zengchao, AghaKouchak, Amir, Nakhjiri, Navid, Farahmand, Alireza

Journal:

Scientific Data

Year:

2014

Language:

english

File:

PDF, 3.58 MB

english, 2014

18

Multi-channel EEG recordings during 3,936 grasp and lift trials with varying weight and friction

Luciw, Matthew D, Jarocka, Ewa, Edin, Benoni B

Journal:

Scientific Data

Year:

2014

Language:

english

File:

PDF, 1.12 MB

english, 2014

19

Comprehensive RNA-Seq transcriptomic profiling across 11 organs, 4 ages, and 2 sexes of Fischer 344 rats

Yu, Ying, Zhao, Chen, Su, Zhenqiang, Wang, Charles, Fuscoe, James C, Tong, Weida, Shi, Leming

Journal:

Scientific Data

Year:

2014

Language:

english

File:

PDF, 412 KB

english, 2014

20

Time-resolved gene expression profiling during reprogramming of C/EBPα-pulsed B cells into iPS cells

Di Stefano, Bruno, Collombet, Samuel, Graf, Thomas

Journal:

Scientific Data

Year:

2014

Language:

english

File:

PDF, 897 KB

english, 2014

21

Life history profiles for 27 strepsirrhine primate taxa generated using captive data from the Duke Lemur Center

Zehr, Sarah M, Roach, Richard G, Haring, David, Taylor, Julie, Cameron, Freda H, Yoder, Anne D

Journal:

Scientific Data

Year:

2014

Language:

english

File:

PDF, 1.98 MB

english, 2014

22

Genome-wide functional genomic and transcriptomic analyses for genes regulating sensitivity to vorinostat

Falkenberg, Katrina J, Gould, Cathryn M, Johnstone, Ricky W, Simpson, Kaylene J

Journal:

Scientific Data

Year:

2014

Language:

english

File:

PDF, 691 KB

english, 2014

23

A draft genome for the African crocodilian trypanosome Trypanosoma grayi

Kelly, Steven, Ivens, Alasdair, Manna, Paul T., Gibson, Wendy, Field, Mark C.

Journal:

Scientific Data

Year:

2014

Language:

english

File:

PDF, 1.60 MB

english, 2014

24

miRNA expression atlas in male rat

Minami, Keiichi, Uehara, Takeki, Morikawa, Yuji, Omura, Ko, Kanki, Masayuki, Horinouchi, Akira, Ono, Atsushi, Yamada, Hiroshi, Ohno, Yasuo, Urushidani, Tetsuro

Journal:

Scientific Data

Year:

2014

Language:

english

File:

PDF, 1.60 MB

english, 2014

25

A comprehensive database of the geographic spread of past human Ebola outbreaks

Mylne, Adrian, Brady, Oliver J., Huang, Zhi, Pigott, David M., Golding, Nick, Kraemer, Moritz U.G., Hay, Simon I.

Journal:

Scientific Data

Year:

2014

Language:

english

File:

PDF, 1.14 MB

english, 2014

26

Multi-modal ultra-high resolution structural 7-Tesla MRI data repository

Forstmann, Birte U, Keuken, Max C, Schafer, Andreas, Bazin, Pierre-Louis, Alkemade, Anneke, Turner, Robert

Journal:

Scientific Data

Year:

2014

Language:

english

File:

PDF, 1.76 MB

english, 2014

27

Global database of leishmaniasis occurrence locations, 1960–2012

Pigott, David M, Golding, Nick, Messina, Jane P, Battle, Katherine E, Duda, Kirsten A, Balard, Yves, Bastien, Patrick, Pratlong, Francine, Brownstein, John S, Freifeld, Clark C, Mekaru, Sumiko R, Mado

Journal:

Scientific Data

Year:

2014

Language:

english

File:

PDF, 714 KB

english, 2014

28

A global compendium of human dengue virus occurrence

Messina, Jane P, Brady, Oliver J, Pigott, David M, Brownstein, John S, Hoen, Anne G, Hay, Simon I

Journal:

Scientific Data

Year:

2014

Language:

english

File:

PDF, 223 KB

english, 2014

29

Quantum chemistry structures and properties of 134 kilo molecules

Ramakrishnan, Raghunathan, Dral, Pavlo O., Rupp, Matthias, von Lilienfeld, O. Anatole

Journal:

Scientific Data

Year:

2014

Language:

english

File:

PDF, 542 KB

english, 2014

30

A high-resolution 7-Tesla fMRI dataset from complex natural stimulation with an audio movie

Hanke, Michael, Baumgartner, Florian J., Ibe, Pierre, Kaule, Falko R., Pollmann, Stefan, Speck, Oliver, Zinke, Wolf, Stadler, Jörg

Journal:

Scientific Data

Year:

2014

Language:

english

File:

PDF, 1.60 MB

english, 2014

31

An extended Arctic proxy temperature database for the past 2,000 years

McKay, Nicholas P., Kaufman, Darrell S.

Journal:

Scientific Data

Year:

2014

Language:

english

File:

PDF, 783 KB

english, 2014

32

Tree of Sex: A database of sexual systems

Ashman, Tia-Lynn, Bachtrog, Doris, Blackmon, Heath, Goldberg, Emma E, Hahn, Matthew W, Kirkpatrick, Mark, Kitano, Jun, Mank, Judith E, Mayrose, Itay, Ming, Ray, Otto, Sarah P, Peichel, Catherine L, Pe

Journal:

Scientific Data

Year:

2014

Language:

english

File:

PDF, 1.99 MB

english, 2014

33

Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies

Cowley, Glenn S, Weir, Barbara A, Vazquez, Francisca, Tamayo, Pablo, Scott, Justine A, Rusin, Scott, East-Seletsky, Alexandra, Ali, Levi D, Gerath, William F.J, Pantel, Sarah E, Lizotte, Patrick H, Ji

Journal:

Scientific Data

Year:

2014

Language:

english

File:

PDF, 59 KB

english, 2014

34

Genomes of diverse isolates of the marine cyanobacterium Prochlorococcus

Biller, Steven J., Berube, Paul M., Berta-Thompson, Jessie W., Kelly, Libusha, Roggensack, Sara E., Awad, Lana, Roache-Johnson, Kathryn H., Ding, Huiming, Giovannoni, Stephen J., Rocap, Gabrielle, Moo

Journal:

Scientific Data

Year:

2014

Language:

english

File:

PDF, 226 KB

english, 2014

35

Concentrations and ratios of particulate organic carbon, nitrogen, and phosphorus in the global ocean

Martiny, Adam C, Vrugt, Jasper A, Lomas, Michael W

Journal:

Scientific Data

Year:

2014

Language:

english

File:

PDF, 458 KB

english, 2014

36

Cross-platform ultradeep transcriptomic profiling of human reference RNA samples by RNA-Seq

Xu, Joshua, Su, Zhenqiang, Hong, Huixiao, Thierry-Mieg, Jean, Thierry-Mieg, Danielle, Kreil, David P., Mason, Christopher E., Tong, Weida, Shi, Leming

Journal:

Scientific Data

Year:

2014

Language:

english

File:

PDF, 1.01 MB

english, 2014

37

The systematic identification of cytoskeletal genes required for Drosophila melanogaster muscle maintenance

Perkins, Alexander D, Lee, Michael J J, Tanentzapf, Guy

Journal:

Scientific Data

Year:

2014

Language:

english

File:

PDF, 318 KB

english, 2014

38

Systematic global assessment of reef fish communities by the Reef Life Survey program

Edgar, Graham J, Stuart-Smith, Rick D

Journal:

Scientific Data

Year:

2014

Language:

english

File:

PDF, 543 KB

english, 2014

39

A Southern Indian Ocean database of hydrographic profiles obtained with instrumented elephant seals

Roquet, Fabien, Williams, Guy, Hindell, Mark A., Harcourt, Rob, McMahon, Clive, Guinet, Christophe, Charrassin, Jean-Benoit, Reverdin, Gilles, Boehme, Lars, Lovell, Phil, Fedak, Mike

Journal:

Scientific Data

Year:

2014

Language:

english

File:

PDF, 1.34 MB

english, 2014

40

Scrutinizing the datasets obtained from nanoscale features of spider silk fibres

Silva, Luciano P, Rech, Elibio L

Journal:

Scientific Data

Year:

2014

Language:

english

File:

PDF, 424 KB

english, 2014

41

Assessment of lipidomic species in hepatocyte lipid droplets from stressed mouse models

Hartler, Jürgen, Köfeler, Harald C, Trötzmüller, Martin, Thallinger, Gerhard G, Spener, Friedrich

Journal:

Scientific Data

Year:

2014

Language:

english

File:

PDF, 446 KB

english, 2014

42

A time-indexed reference standard of adverse drug reactions

Harpaz, Rave, Odgers, David, Gaskin, Greg, DuMouchel, William, Winnenburg, Rainer, Bodenreider, Olivier, Ripple, Anna, Szarfman, Ana, Sorbello, Alfred, Horvitz, Eric, White, Ryen W., Shah, Nigam H.

Journal:

Scientific Data

Year:

2014

Language:

english

File:

PDF, 984 KB

english, 2014

43

More bang for your byte

Journal:

Scientific Data

Year:

2014

Language:

english

File:

PDF, 85 KB

english, 2014

44

Transcriptomic analysis of midbrain and individual hindbrain rhombomeres in the chick embryo

Wilson, Leigh, Chambers, David

Journal:

Scientific Data

Year:

2014

Language:

english

File:

PDF, 735 KB

english, 2014

45

The Clodia database: a long time series of fishery data from the Adriatic Sea

Mazzoldi, Carlotta, Sambo, Andrea, Riginella, Emilio

Journal:

Scientific Data

Year:

2014

Language:

english

File:

PDF, 1002 KB

english, 2014

46

Longitudinal recordings of the vocalizations of immature Gombe chimpanzees for developmental studies

Plooij, Frans X., van de Rijt-Plooij, Hetty, Fischer, Martha, Pusey, Anne

Journal:

Scientific Data

Year:

2014

Language:

english

File:

PDF, 1.11 MB

english, 2014

47

Artificial selection on anther exsertion in wild radish, Raphanus raphanistrum

Conner, Jeffrey K., Mills, Cynthia J., Koelling, Vanessa A., Karoly, Keith

Journal:

Scientific Data

Year:

2014

Language:

english

File:

PDF, 461 KB

english, 2014

48

Open data for evolutionary synthesis: an introduction to the NESCent collection

Vision, Todd J., Cranston, Karen

Journal:

Scientific Data

Year:

2014

Language:

english

File:

PDF, 97 KB

english, 2014

49

Synaptic molecular imaging in spared and deprived columns of mouse barrel cortex with array tomography

Weiler, Nicholas C, Collman, Forrest, Vogelstein, Joshua T, Burns, Randal, Smith, Stephen J

Journal:

Scientific Data

Year:

2014

Language:

english

File:

PDF, 2.24 MB

english, 2014

50

A reanalysis dataset of the South China Sea

Zeng, Xuezhi, Peng, Shiqiu, Li, Zhijin, Qi, Yiquan, Chen, Rongyu

Journal:

Scientific Data

Year:

2014

Language:

english

File:

PDF, 3.92 MB

english, 2014

51

The species translation challenge—A systems biology perspective on human and rat bronchial epithelial cells

Poussin, Carine, Mathis, Carole, Alexopoulos, Leonidas G, Messinis, Dimitris E, Dulize, Rémi H J, Belcastro, Vincenzo, Melas, Ioannis N, Sakellaropoulos, Theodore, Rhrissorrakrai, Kahn, Bilal, Erhan,

Journal:

Scientific Data

Year:

2014

Language:

english

File:

PDF, 1.61 MB

english, 2014

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