Volume 12; Issue 1

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BMC Molecular Biology
Volume 12; Issue 1

BMC Molecular Biology

Volume 12; Issue 1

1

TEAD1-dependent expression of theFoxO3agene in mouse skeletal muscle

Haifang Qiu, Fengli Wang, Chuxin Liu, Xuewen Xu, Bang Liu

Journal:

BMC Molecular Biology

Year:

2011

Language:

english

File:

PDF, 1.15 MB

english, 2011

2

Mapping and functional characterization of the murine Smoothelin-like 1 promoter

Annegret Ulke-Lemée, Sara R Turner, Saad H Mughal, Meredith A Borman, Robert J Winkfein, Justin A MacDonald

Journal:

BMC Molecular Biology

Year:

2011

Language:

english

File:

PDF, 1.20 MB

english, 2011

3

High throughput nano-liter RT-qPCR to classify soil contamination using a soil arthropod

Muriel E de Boer, Sandra Berg, Martijn JTN Timmermans, Johan T den Dunnen, Nico M van Straalen, Jacintha Ellers, Dick Roelofs

Journal:

BMC Molecular Biology

Year:

2011

Language:

english

File:

PDF, 2.04 MB

english, 2011

4

Recombination Phenotypes ofEscherichia coli greAMutants

Anthony R Poteete

Journal:

BMC Molecular Biology

Year:

2011

Language:

english

File:

PDF, 725 KB

english, 2011

5

Drosophila Ctf4 is essential for efficient DNA replication and normal cell cycle progression

Justin A Gosnell, Tim W Christensen

Journal:

BMC Molecular Biology

Year:

2011

Language:

english

File:

PDF, 2.76 MB

english, 2011

6

Northern blotting analysis of microRNAs, their precursors and RNA interference triggers

Edyta Koscianska, Julia Starega-Roslan, Lukasz J Sznajder, Marta Olejniczak, Paulina Galka-Marciniak, Wlodzimierz J Krzyzosiak

Journal:

BMC Molecular Biology

Year:

2011

Language:

english

File:

PDF, 1.61 MB

english, 2011

7

A cDNA microarray, UniShrimpChip, for identification of genes relevant to testicular development in the black tiger shrimp (Penaeus monodon)

Rungnapa Leelatanawit, Umaporn Uawisetwathana, Sirawut Klinbunga, Nitsara Karoonuthaisiri

Journal:

BMC Molecular Biology

Year:

2011

Language:

english

File:

PDF, 12.42 MB

english, 2011

8

Functional characterization of an alkaline exonuclease and single strand annealing protein from the SXT genetic element ofVibrio cholerae

Wen-yang Chen, John WS Ho, Jian-dong Huang, Rory M Watt

Journal:

BMC Molecular Biology

Year:

2011

Language:

english

File:

PDF, 1.71 MB

english, 2011

9

RecA Proteins fromDeinococcus geothermalisandDeinococcus murrayi- Cloning, Purification and Biochemical Characterisation

Marta Wanarska, Beata Krawczyk, Piotr Hildebrandt, Józef Kur

Journal:

BMC Molecular Biology

Year:

2011

Language:

english

File:

PDF, 4.01 MB

english, 2011

10

Novel reference genes for quantifying transcriptional responses ofEscherichia colito protein overexpression by quantitative PCR

Kang Zhou, Lihan Zhou, Qing ’En Lim, Ruiyang Zou, Gregory Stephanopoulos, Heng-Phon Too

Journal:

BMC Molecular Biology

Year:

2011

Language:

english

File:

PDF, 463 KB

english, 2011

11

Clarifying mammalian RISC assemblyin vitro

Grace S Tan, Barry G Garchow, Xuhang Liu, David Metzler, Marianthi Kiriakidou

Journal:

BMC Molecular Biology

Year:

2011

Language:

english

File:

PDF, 3.53 MB

english, 2011

12

Microarray estimation of genomic inter-strain variability in the genusEctocarpus(Phaeophyceae)

Simon M Dittami, Caroline Proux, Sylvie Rousvoal, Akira F Peters, J Mark Cock, Jean-Yves Coppée, Catherine Boyen, Thierry Tonon

Journal:

BMC Molecular Biology

Year:

2011

Language:

english

File:

PDF, 534 KB

english, 2011

13

The four Zn fingers of MBNL1 provide a flexible platform for recognition of its RNA binding elements

Danielle Cass, Rachel Hotchko, Paul Barber, Kimberly Jones, Devika P Gates, J Andrew Berglund

Journal:

BMC Molecular Biology

Year:

2011

Language:

english

File:

PDF, 2.13 MB

english, 2011

14

Cell-to-cell diversity in protein levels of a gene driven by a tetracycline inducible promoter

Olli-Pekka Smolander, Meenakshisundaram Kandhavelu, Henrik Mannerström, Eero Lihavainen, Shanmugapriya Kalaichelvan, Shannon Healy, Olli Yli-Harja, Matti Karp, Andre S Ribeiro

Journal:

BMC Molecular Biology

Year:

2011

Language:

english

File:

PDF, 496 KB

english, 2011

15

GhMPK16, a novel stress-responsive group D MAPK gene from cotton, is involved in disease resistance and drought sensitivity

Jing Shi, Liang Zhang, Hailong An, Changai Wu, Xingqi Guo

Journal:

BMC Molecular Biology

Year:

2011

Language:

english

File:

PDF, 2.35 MB

english, 2011

16

Recombination phenotypes of the NCI-60 collection of human cancer cells

Dawn M Stults, Michael W Killen, Brent J Shelton, Andrew J Pierce

Journal:

BMC Molecular Biology

Year:

2011

Language:

english

File:

PDF, 2.84 MB

english, 2011

17

Exon sequence requirements for excisionin vivoof the bacterial group II intron RmInt1

Antonio Barrientos-Durán, Isabel Chillón, Francisco Martínez-Abarca, Nicolás Toro

Journal:

BMC Molecular Biology

Year:

2011

Language:

english

File:

PDF, 2.14 MB

english, 2011

18

Functional characterization of the ER stress induced X-box-binding protein-1 (Xbp-1) in the porcine system

Jin-Yu Zhang, Kyu-Sun Lee, Ji-Su Kim, Bong-Seok Song, Dong-Il Jin, Deog-Bon Koo, Kweon Yu

Journal:

BMC Molecular Biology

Year:

2011

Language:

english

File:

PDF, 2.72 MB

english, 2011

19

Alternative splicing of the human gene SYBL1 modulates protein domain architecture of longin VAMP7/TI-VAMP, showing both non-SNARE and synaptobrevin-like isoforms

Marcella Vacca, Lara Albania, Della Floriana Ragione, Andrea Carpi, Valeria Rossi, Maria Strazzullo, Nicola De Franceschi, Ornella Rossetto, Francesco Filippini, Maurizio D’Esposito

Journal:

BMC Molecular Biology

Year:

2011

Language:

english

File:

PDF, 1.85 MB

english, 2011

20

Liposome-based DNA carriers may induce cellular stress response and change gene expression pattern in transfected cells

Anna Fiszer-Kierzkowska, Natalia Vydra, Aleksandra Wysocka-Wycisk, Zuzana Kronekova, Michał Jarząb, Katarzyna Marta Lisowska, Zdzisław Krawczyk

Journal:

BMC Molecular Biology

Year:

2011

Language:

english

File:

PDF, 1.43 MB

english, 2011

21

CGGBP1 regulates cell cycle in cancer cells

Umashankar Singh, Pernilla Roswall, Lene Uhrbom, Bengt Westermark

Journal:

BMC Molecular Biology

Year:

2011

Language:

english

File:

PDF, 2.48 MB

english, 2011

22

Regulation of bombesin-stimulated cyclooxygenase-2 expression in prostate cancer cells

Xiaodong Wen, Celia Chao, Kirk Ives, Mark R Hellmich

Journal:

BMC Molecular Biology

Year:

2011

Language:

english

File:

PDF, 2.83 MB

english, 2011

23

Strand-specific transcriptome profiling with directly labeled RNA on genomic tiling microarrays

Wen-Han Yu, Hedda Høvik, Ingar Olsen, Tsute Chen

Journal:

BMC Molecular Biology

Year:

2011

Language:

english

File:

PDF, 864 KB

english, 2011

24

TRPC1 transcript variants, inefficient nonsense-mediated decay and low up-frameshift-1 in vascular smooth muscle cells

Alexandra M Dedman, Yasser Majeed, Sarka Tumova, Fanning Zeng, Bhaskar Kumar, Christopher Munsch, Alan N Bateson, Jürgen Wittmann, Hans-Martin Jäck, Karen E Porter, David J Beech

Journal:

BMC Molecular Biology

Year:

2011

Language:

english

File:

PDF, 686 KB

english, 2011

25

Analysis of the regulation of fatty acid binding protein 7 expression in human renal carcinoma cell lines

Naohisa Takaoka, Tatsuya Takayama, Takumi Teratani, Takayuki Sugiyama, Soichi Mugiya, Seiichiro Ozono

Journal:

BMC Molecular Biology

Year:

2011

Language:

english

File:

PDF, 2.16 MB

english, 2011

26

Functional characterization of the sciaridBhC4-1core promoter in transgenicDrosophila

Adriana C Garcia, Daniel LG Gitaí, Fernanda C Humann, Maria L Paçó-Larson, Nadia Monesi

Journal:

BMC Molecular Biology

Year:

2011

Language:

english

File:

PDF, 3.29 MB

english, 2011

27

Cruciform structures are a common DNA feature important for regulating biological processes

Václav Brázda, Rob C Laister, Eva B Jagelská, Cheryl Arrowsmith

Journal:

BMC Molecular Biology

Year:

2011

Language:

english

File:

PDF, 723 KB

english, 2011

28

The effects of stem length and core placement on shRNA activity

Glen J Mcintyre, Yi-Hsin Yu, Mehnaaz Lomas, Gregory C Fanning

Journal:

BMC Molecular Biology

Year:

2011

Language:

english

File:

PDF, 425 KB

english, 2011

29

Increased complexity ofTmem16a/Anoctamin1 transcript alternative splicing

Kate E O’Driscoll, Rachel A Pipe, Fiona C Britton

Journal:

BMC Molecular Biology

Year:

2011

Language:

english

File:

PDF, 668 KB

english, 2011

30

Use of Maximum Likelihood-Mixed Models to select stable reference genes: a case of heat stress response in sheep

Magdalena Serrano, Natalia Moreno-Sánchez, Carmen González, Ane Marcos-Carcavilla, Mario Van Poucke, Jorge H Calvo, Judit Salces, Jaime Cubero, María J Carabaño

Journal:

BMC Molecular Biology

Year:

2011

Language:

english

File:

PDF, 305 KB

english, 2011

31

Transcripts that associate with the RNA binding protein, DEAD-END (DND1), in embryonic stem (ES) cells

Rui Zhu, Michelina Iacovino, Elisabeth Mahen, Michael Kyba, Angabin Matin

Journal:

BMC Molecular Biology

Year:

2011

Language:

english

File:

PDF, 447 KB

english, 2011

32

The resistance of the yeastSaccharomyces cerevisiaeto the biocide polyhexamethylene biguanide: involvement of cell wall integrity pathway and emerging role for YAP1

Carolina Elsztein, Rodrigo M de Lucena, Marcos A de Morais

Journal:

BMC Molecular Biology

Year:

2011

Language:

english

File:

PDF, 945 KB

english, 2011

33

Identification of two distinct genes at the vertebrateTRPC2locus and their characterisation in a marsupial and a monotreme

Stephen Frankenberg, Nanette Y Schneider, Terrence P Fletcher, Geoffrey Shaw, Marilyn B Renfree

Journal:

BMC Molecular Biology

Year:

2011

Language:

english

File:

PDF, 443 KB

english, 2011

34

Rasd1 interacts with Ear2 (Nr2f6) to regulate renin transcription

Jen Jen Tan, Shufen Angeline Ong, Ken-Shiung Chen

Journal:

BMC Molecular Biology

Year:

2011

Language:

english

File:

PDF, 1.68 MB

english, 2011

35

Profile of small interfering RNAs from cotton plants infected with the polerovirus Cotton leafroll dwarf virus

Tatiane F Silva, Elisson AC Romanel, Roberto RS Andrade, Laurent Farinelli, Magne Østerås, Cécile Deluen, Régis L Corrêa, Carlos EG Schrago, Maite FS Vaslin

Journal:

BMC Molecular Biology

Year:

2011

Language:

english

File:

PDF, 617 KB

english, 2011

36

LIM kinase 1 - dependent cofilin 1 pathway and actin dynamics mediate nuclear retinoid receptor function in T lymphocytes

Mohammad Ishaq, Bor-Ruei Lin, Marjorie Bosche, Xin Zheng, Jun Yang, Dawei Huang, Richard A Lempicki, Ven Natarajan

Journal:

BMC Molecular Biology

Year:

2011

Language:

english

File:

PDF, 799 KB

english, 2011

37

A small basic protein from thebrz-brboperon is involved in regulation ofboptranscription inHalobacterium salinarum

Valery Tarasov, Rita Schwaiger, Katarina Furtwängler, Mike Dyall-Smith, Dieter Oesterhelt

Journal:

BMC Molecular Biology

Year:

2011

Language:

english

File:

PDF, 1.33 MB

english, 2011

38

Characterization of the χψ subcomplex ofPseudomonas aeruginosaDNA polymerase III

Sirine El Houry Mignan, Gregor Witte, Natalie Naue, Ute Curth

Journal:

BMC Molecular Biology

Year:

2011

Language:

english

File:

PDF, 620 KB

english, 2011

39

Cis-regulatory functions of overlapping HIF-1alpha/E-box/AP-1-like sequences of CD164

Jingqun Tang, Zhaohui Luo, Guangqian Zhou, Chao Song, Fenglei Yu, Juanjuan Xiang, Gang Li

Journal:

BMC Molecular Biology

Year:

2011

Language:

english

File:

PDF, 883 KB

english, 2011

40

The TPR-containing domain within Est1 homologs exhibits species-specific roles in telomerase interaction and telomere length homeostasis

David CF Sealey, Aleksandar D Kostic, Catherine LeBel, Fiona Pryde, Lea Harrington

Journal:

BMC Molecular Biology

Year:

2011

Language:

english

File:

PDF, 892 KB

english, 2011

41

SWI/SNF regulates the alternative processing of a specific subset of pre-mRNAs inDrosophila melanogaster

Johan Waldholm, Zhi Wang, David Brodin, Anu Tyagi, Simei Yu, Ulrich Theopold, Ann Kristin Östlund Farrants, Neus Visa

Journal:

BMC Molecular Biology

Year:

2011

Language:

english

File:

PDF, 436 KB

english, 2011

42

Identification, phylogenetic analysis and expression profile of an anionic insect defensin gene, with antibacterial activity, from bacterial-challenged cotton leafworm,Spodoptera littoralis

AlaaEddeen M Seufi, Elsayed E Hafez, Fatma H Galal

Journal:

BMC Molecular Biology

Year:

2011

Language:

english

File:

PDF, 1.58 MB

english, 2011

43

Cell type-dependent gene regulation by Staufen2 in conjunction with Upf1

Takashi Miki, Yasunao Kamikawa, Sadamu Kurono, Yuka Kaneko, Jun Katahira, Yoshihiro Yoneda

Journal:

BMC Molecular Biology

Year:

2011

Language:

english

File:

PDF, 1.09 MB

english, 2011

44

Microplate-based platform for combined chromatin and DNA methylation immunoprecipitation assays

Jingjing Yu, Qinghua Feng, Yusong Ruan, Radko Komers, Nancy Kiviat, Karol Bomsztyk

Journal:

BMC Molecular Biology

Year:

2011

Language:

english

File:

PDF, 1.31 MB

english, 2011

45

Evaluation of suitable reference genes for gene expression studies in bronchoalveolar lavage cells from horses with inflammatory airway disease

Laura Beekman, Triin Tohver, Rkia Dardari, Renaud Léguillette

Journal:

BMC Molecular Biology

Year:

2011

Language:

english

File:

PDF, 436 KB

english, 2011

46

Ste11p MEKK signals through HOG, mating, calcineurin and PKC pathways to regulate theFKS2gene

Xiaoyan Wang, Mark A Sheff, David M Simpson, Elaine A Elion

Journal:

BMC Molecular Biology

Year:

2011

Language:

english

File:

PDF, 992 KB

english, 2011

47

Two-step cleavage of hairpin RNA with 5' overhangs by human DICER

Yoshinari Ando, Yoshiko Maida, Ayako Morinaga, Alexander M Burroughs, Ryuichiro Kimura, Joe Chiba, Harukazu Suzuki, Kenkichi Masutomi, Yoshihide Hayashizaki

Journal:

BMC Molecular Biology

Year:

2011

Language:

english

File:

PDF, 1.04 MB

english, 2011

48

Assessment and validation of a suite of reverse transcription-quantitative PCR reference genes for analyses of density-dependent behavioural plasticity in the Australian plague locust

Marie-Pierre Chapuis, Donya Tohidi-Esfahani, Tim Dodgson, Laurence Blondin, Fleur Ponton, Darron Cullen, Stephen J Simpson, Gregory A Sword

Journal:

BMC Molecular Biology

Year:

2011

Language:

english

File:

PDF, 354 KB

english, 2011

49

Selection of reference genes for gene expression studies in ultraviolet B-irradiated human skin fibroblasts using quantitative real-time PCR

Li Li, Yan Yan, Haoxiang Xu, Tao Qu, Baoxi Wang

Journal:

BMC Molecular Biology

Year:

2011

Language:

english

File:

PDF, 1.99 MB

english, 2011

50

TGFβ1 enhancesMAD1expression and stimulates promoter-bound Pol II phosphorylation: basic functions of C/EBP, SP and SMAD3 transcription factors

Nadine Hein, Kan Jiang, Christian Cornelissen, Bernhard Lüscher

Journal:

BMC Molecular Biology

Year:

2011

Language:

english

File:

PDF, 1.15 MB

english, 2011

51

FrancisellaRNA polymerase contains a heterodimer of non-identical α subunits

Damir Mukhamedyarov, Kira S Makarova, Konstantin Severinov, Konstantin Kuznedelov

Journal:

BMC Molecular Biology

Year:

2011

Language:

english

File:

PDF, 2.10 MB

english, 2011

52

Characterization of a proximal Sp1 response element in the mouseDlk2gene promoter

Samuel Rivero, Almudena Ruiz-García, María JM Díaz-Guerra, Jorge Laborda, José J García-Ramírez

Journal:

BMC Molecular Biology

Year:

2011

Language:

english

File:

PDF, 684 KB

english, 2011

53

Fork head transcription factor is required for ovarian mature in the brown planthopper,Nilaparvata lugens(Stål)

Xiaolin Dong, Yifan Zhai, Jianqing Zhang, Zhongxiang Sun, Jing Chen, Jie Chen, Wenqing Zhang

Journal:

BMC Molecular Biology

Year:

2011

Language:

english

File:

PDF, 535 KB

english, 2011