Volume 7; Issue 1

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BMC Plant Biology
Volume 7; Issue 1

BMC Plant Biology

Volume 7; Issue 1

1

Identification of amino acid residues involved in substrate specificity of plant acyl-ACP thioesterases using a bioinformatics-guided approach

Kimberly M Mayer, John Shanklin

Journal:

BMC Plant Biology

Year:

2007

Language:

english

File:

PDF, 524 KB

english, 2007

2

Quantification of the tissue-culture induced variation in barley (Hordeum vulgareL.)

Piotr T Bednarek, Renata Orłowska, Robert MD Koebner, Janusz Zimny

Journal:

BMC Plant Biology

Year:

2007

Language:

english

File:

PDF, 283 KB

english, 2007

3

Silencing of beta-carotene hydroxylase increases total carotenoid and beta-carotene levels in potato tubers

Gianfranco Diretto, Ralf Welsch, Raffaela Tavazza, Fabienne Mourgues, Daniele Pizzichini, Peter Beyer, Giovanni Giuliano

Journal:

BMC Plant Biology

Year:

2007

Language:

english

File:

PDF, 465 KB

english, 2007

4

Microsatellite analysis of Damask rose (Rosa damascenaMill.) accessions from various regions in Iran reveals multiple genotypes

Alireza Babaei, Seyed Reza Tabaei-Aghdaei, Morteza Khosh-Khui, Reza Omidbaigi, Mohammad Reza Naghavi, Gerhard D Esselink, Marinus JM Smulders

Journal:

BMC Plant Biology

Year:

2007

Language:

english

File:

PDF, 238 KB

english, 2007

5

Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution

Isam Fattash, Björn Voß, Ralf Reski, Wolfgang R Hess, Wolfgang Frank

Journal:

BMC Plant Biology

Year:

2007

Language:

english

File:

PDF, 867 KB

english, 2007

6

Isolation and functional characterization of a cDNA coding a hydroxycinnamoyltransferase involved in phenylpropanoid biosynthesis inCynara cardunculusL

Cinzia Comino, Sergio Lanteri, Ezio Portis, Alberto Acquadro, Annalisa Romani, Alain Hehn, Romain Larbat, Frédéric Bourgaud

Journal:

BMC Plant Biology

Year:

2007

Language:

english

File:

PDF, 1.36 MB

english, 2007

7

Mapping ofA1conferring resistance to the aphidAmphorophora idaeianddw(dwarfing habit) in red raspberry (Rubus idaeusL.) using AFLP and microsatellite markers

Daniel J Sargent, Felicidad Fernández-Fernández, Alicja Rys, Victoria H Knight, David W Simpson, Kenneth R Tobutt

Journal:

BMC Plant Biology

Year:

2007

Language:

english

File:

PDF, 539 KB

english, 2007

8

Molecular characterisation of theSTRUBBELIG-RECEPTOR FAMILYof genes encoding putative leucine-rich repeat receptor-like kinases inArabidopsis thaliana

Banu Eyüboglu, Karen Pfister, Georg Haberer, David Chevalier, Angelika Fuchs, Klaus FX Mayer, Kay Schneitz

Journal:

BMC Plant Biology

Year:

2007

Language:

english

File:

PDF, 3.38 MB

english, 2007

9

Conifer R2R3-MYB transcription factors: sequence analyses and gene expression in wood-forming tissues of white spruce (Picea glauca)

Frank Bedon, Jacqueline Grima-Pettenati, John Mackay

Journal:

BMC Plant Biology

Year:

2007

Language:

english

File:

PDF, 1.15 MB

english, 2007

10

Impact of AtNHX1, a vacuolar Na+/H+antiporter, upon gene expression during short- and long-term salt stress inArabidopsis thaliana

Jordan B Sottosanto, Yehoshua Saranga, Eduardo Blumwald

Journal:

BMC Plant Biology

Year:

2007

Language:

english

File:

PDF, 391 KB

english, 2007

11

Discovery of chemically induced mutations in rice by TILLING

Bradley J Till, Jennifer Cooper, Thomas H Tai, Peter Colowit, Elizabeth A Greene, Steven Henikoff, Luca Comai

Journal:

BMC Plant Biology

Year:

2007

Language:

english

File:

PDF, 557 KB

english, 2007

12

Functional analysis ofArabidopsisWRKY25 transcription factor in plant defense againstPseudomonas syringae

Zuyu Zheng, Stephen L Mosher, Baofang Fan, Daniel F Klessig, Zhixiang Chen

Journal:

BMC Plant Biology

Year:

2007

Language:

english

File:

PDF, 1.12 MB

english, 2007

13

pax1-1partially suppresses gain-of-function mutations inArabidopsis AXR3/IAA17

Mimi Tanimoto, Jemma Jowett, Petra Stirnberg, Dean Rouse, Ottoline Leyser

Journal:

BMC Plant Biology

Year:

2007

Language:

english

File:

PDF, 626 KB

english, 2007

14

Auxin and nitric oxide control indeterminate nodule formation

Youry Pii, Massimo Crimi, Giorgia Cremonese, Angelo Spena, Tiziana Pandolfini

Journal:

BMC Plant Biology

Year:

2007

Language:

english

File:

PDF, 734 KB

english, 2007

15

Analysis of gene expression in cotton fiber initials

Earl W Taliercio, Deborah Boykin

Journal:

BMC Plant Biology

Year:

2007

Language:

english

File:

PDF, 752 KB

english, 2007

16

A set of multiplex panels of microsatellite markers for rapid molecular characterization of rice accessions

Marco Pessoa-Filho, André Beló, António AN Alcochete, Paulo HN Rangel, Márcio E Ferreira

Journal:

BMC Plant Biology

Year:

2007

Language:

english

File:

PDF, 328 KB

english, 2007

17

Endogenous pararetroviral sequences in tomato (Solanum lycopersicum) and related species

Christina Staginnus, Wolfgang Gregor, M Florian Mette, Chee How Teo, Eduviges Glenda Borroto-Fernández, Margit Laimer da Câmara Machado, Marjori Matzke, Trude Schwarzacher

Journal:

BMC Plant Biology

Year:

2007

Language:

english

File:

PDF, 1.57 MB

english, 2007

18

A first step in understanding an invasive weed through its genes: an EST analysis of invasiveCentaurea maculosa

Amanda K Broz, Corey D Broeckling, Ji He, Xinbin Dai, Patrick X Zhao, Jorge M Vivanco

Journal:

BMC Plant Biology

Year:

2007

Language:

english

File:

PDF, 321 KB

english, 2007

19

Saccharomyces cerevisiaeFKBP12 bindsArabidopsis thalianaTOR and its expression in plants leads to rapamycin susceptibility

Rodnay Sormani, Lei Yao, Benoît Menand, Najla Ennar, Cécile Lecampion, Christian Meyer, Christophe Robaglia

Journal:

BMC Plant Biology

Year:

2007

Language:

english

File:

PDF, 494 KB

english, 2007

20

Characterization of expressed sequence tags obtained by SSH during somatic embryogenesis inCichorium intybusL

Sylvain Legrand, Theo Hendriks, Jean-Louis Hilbert, Marie-Christine Quillet

Journal:

BMC Plant Biology

Year:

2007

Language:

english

File:

PDF, 757 KB

english, 2007

21

The red fluorescent protein eqFP611: application in subcellular localization studies in higher plants

Joachim Forner, Stefan Binder

Journal:

BMC Plant Biology

Year:

2007

Language:

english

File:

PDF, 663 KB

english, 2007

22

A BAC end view of theMusa acuminatagenome

Foo Cheung, Christopher D Town

Journal:

BMC Plant Biology

Year:

2007

Language:

english

File:

PDF, 390 KB

english, 2007

23

A strong constitutive ethylene-response phenotype conferred on Arabidopsis plants containing null mutations in the ethylene receptorsETR1andERS1

Xiang Qu, Brenda P Hall, Zhiyong Gao, G Eric Schaller

Journal:

BMC Plant Biology

Year:

2007

Language:

english

File:

PDF, 1.81 MB

english, 2007

24

QTL mapping of agronomic traits in tef [Eragrostis tef(Zucc) Trotter]

Ju-Kyung Yu, Elizabeth Graznak, Flavio Breseghello, Hailu Tefera, Mark E Sorrells

Journal:

BMC Plant Biology

Year:

2007

Language:

english

File:

PDF, 333 KB

english, 2007

25

Restricted cell elongation inArabidopsishypocotyls is associated with a reduced average pectin esterification level

Paul Derbyshire, Maureen C McCann, Keith Roberts

Journal:

BMC Plant Biology

Year:

2007

Language:

english

File:

PDF, 700 KB

english, 2007

26

Transcriptional activation and localization of expression ofBrassica junceaputative metal transport proteinBjMTP1

Balasubramaniam Muthukumar, Bakhtiyor Yakubov, David E Salt

Journal:

BMC Plant Biology

Year:

2007

Language:

english

File:

PDF, 1.34 MB

english, 2007

27

Compartmentation of sucrose during radial transfer in mature sorghum culm

Lee Tarpley, Donald M Vietor

Journal:

BMC Plant Biology

Year:

2007

Language:

english

File:

PDF, 406 KB

english, 2007

28

EcoTILLING for the identification of allelic variants of meloneIF4E, a factor that controls virus susceptibility

Cristina Nieto, Florence Piron, Marion Dalmais, Cristina F Marco, Enrique Moriones, Ma Luisa Gómez-Guillamón, Verónica Truniger, Pedro Gómez, Jordi Garcia-Mas, Miguel A Aranda, Abdelhafid Bendahmane

Journal:

BMC Plant Biology

Year:

2007

Language:

english

File:

PDF, 728 KB

english, 2007

29

EDR2negatively regulates salicylic acid-based defenses and cell death during powdery mildew infections ofArabidopsis thaliana

Sonja Vorwerk, Celine Schiff, Marjorie Santamaria, Serry Koh, Marc Nishimura, John Vogel, Chris Somerville, Shauna Somerville

Journal:

BMC Plant Biology

Year:

2007

Language:

english

File:

PDF, 2.05 MB

english, 2007

30

Frequency, type, and distribution of EST-SSRs from three genotypes ofLolium perenne, and their conservation across orthologous sequences ofFestuca arundinacea, Brachypodium distachyon, andOryza sativa

Torben Asp, Ursula K Frei, Thomas Didion, Klaus K Nielsen, Thomas Lübberstedt

Journal:

BMC Plant Biology

Year:

2007

Language:

english

File:

PDF, 489 KB

english, 2007

31

Mutations in a plastid-localized elongation factor G alter early stages of plastid development inArabidopsis thaliana

Nicholas J Ruppel, Roger P Hangarter

Journal:

BMC Plant Biology

Year:

2007

Language:

english

File:

PDF, 1.05 MB

english, 2007

32

Novel exon combinations generated by alternative splicing of gene fragments mobilized by a CACTA transposon inGlycine max

Gracia Zabala, Lila Vodkin

Journal:

BMC Plant Biology

Year:

2007

Language:

english

File:

PDF, 536 KB

english, 2007

33

Arabidopsis Gene Family Profiler (aGFP) – user-oriented transcriptomic database with easy-to-use graphic interface

Nikoleta Dupl'áková, David Reňák, Patrik Hovanec, Barbora Honysová, David Twell, David Honys

Journal:

BMC Plant Biology

Year:

2007

Language:

english

File:

PDF, 1.18 MB

english, 2007

34

Genome-wide identification and analyses of the rice calmodulin and related potential calcium sensor proteins

Bongkoj Boonburapong, Teerapong Buaboocha

Journal:

BMC Plant Biology

Year:

2007

Language:

english

File:

PDF, 1.52 MB

english, 2007

35

A comparative map viewer integrating genetic maps forBrassicaandArabidopsis

Geraldine AC Lim, Erica G Jewell, Xi Li, Timothy A Erwin, Christopher Love, Jacqueline Batley, German Spangenberg, David Edwards

Journal:

BMC Plant Biology

Year:

2007

Language:

english

File:

PDF, 1.18 MB

english, 2007

36

Calcium-mediated perception and defense responses activated in plant cells by metabolite mixtures secreted by the biocontrol fungusTrichoderma atroviride

Lorella Navazio, Barbara Baldan, Roberto Moscatiello, Anna Zuppini, Sheridan L Woo, Paola Mariani, Matteo Lorito

Journal:

BMC Plant Biology

Year:

2007

Language:

english

File:

PDF, 986 KB

english, 2007

37

An analysis of expressed sequence tags of developing castor endosperm using a full-length cDNA library

Chaofu Lu, James G Wallis, John Browse

Journal:

BMC Plant Biology

Year:

2007

Language:

english

File:

PDF, 389 KB

english, 2007

38

Nucleotide diversity and linkage disequilibrium in 11 expressed resistance candidate genes inLolium perenne

Yongzhong Xing, Uschi Frei, Britt Schejbel, Torben Asp, Thomas Lübberstedt

Journal:

BMC Plant Biology

Year:

2007

Language:

english

File:

PDF, 658 KB

english, 2007

39

Large-scale polymorphism of heterochromatic repeats in the DNA ofArabidopsis thaliana

Jerry Davison, Anand Tyagi, Luca Comai

Journal:

BMC Plant Biology

Year:

2007

Language:

english

File:

PDF, 1.12 MB

english, 2007

40

Complete DNA sequences of the plastid genomes of two parasitic flowering plant species,Cuscuta reflexaandCuscuta gronovii

Helena T Funk, Sabine Berg, Karin Krupinska, Uwe G Maier, Kirsten Krause

Journal:

BMC Plant Biology

Year:

2007

Language:

english

File:

PDF, 481 KB

english, 2007

41

Transcriptional control of anthocyanin biosynthetic genes in extreme phenotypes for berry pigmentation of naturally occurring grapevines

Simone D Castellarin, Gabriele Di Gaspero

Journal:

BMC Plant Biology

Year:

2007

Language:

english

File:

PDF, 520 KB

english, 2007

42

Tagging of MADS domain proteins for chromatin immunoprecipitation

Stefan de Folter, Susan L Urbanus, Lisette GC van Zuijlen, Kerstin Kaufmann, Gerco C Angenent

Journal:

BMC Plant Biology

Year:

2007

Language:

english

File:

PDF, 580 KB

english, 2007

43

The cyclic nucleotide gated cation channel AtCNGC10 traffics from the ER via Golgi vesicles to the plasma membrane of Arabidopsis root and leaf cells

David A Christopher, Tamas Borsics, Christen YL Yuen, Wendy Ullmer, Christine Andème-Ondzighi, Marilou A Andres, Byung-Ho Kang, L Andrew Staehelin

Journal:

BMC Plant Biology

Year:

2007

Language:

english

File:

PDF, 2.49 MB

english, 2007

44

Differential gene expression in an elite hybrid rice cultivar (Oryza sativa, L) and its parental lines based on SAGE data

Shuhui Song, Hongzhu Qu, Chen Chen, Songnian Hu, Jun Yu

Journal:

BMC Plant Biology

Year:

2007

Language:

english

File:

PDF, 1.28 MB

english, 2007

45

BBGD: an online database for blueberry genomic data

Nadim W Alkharouf, Anik L Dhanaraj, Dhananjay Naik, Chris Overall, Benjamin F Matthews, Lisa J Rowland

Journal:

BMC Plant Biology

Year:

2007

Language:

english

File:

PDF, 478 KB

english, 2007

46

Evaluation of reference genes for real-time RT-PCR expression studies in the plant pathogenPectobacterium atrosepticum

Gunnhild W Takle, Ian K Toth, May B Brurberg

Journal:

BMC Plant Biology

Year:

2007

Language:

english

File:

PDF, 374 KB

english, 2007

47

Inorganic polyphosphate occurs in the cell wall ofChlamydomonas reinhardtiiand accumulates during cytokinesis

Thomas P Werner, Nikolaus Amrhein, Florian M Freimoser

Journal:

BMC Plant Biology

Year:

2007

Language:

english

File:

PDF, 2.11 MB

english, 2007

48

Erwinia carotovoraelicitors andBotrytis cinereaactivate defense responses inPhyscomitrella patens

Inés Ponce de León, Juan Pablo Oliver, Alexandra Castro, Carina Gaggero, Marcel Bentancor, Sabina Vidal

Journal:

BMC Plant Biology

Year:

2007

Language:

english

File:

PDF, 823 KB

english, 2007

49

An EST database from saffron stigmas

Nunzio D'Agostino, Daniele Pizzichini, Maria Luisa Chiusano, Giovanni Giuliano

Journal:

BMC Plant Biology

Year:

2007

Language:

english

File:

PDF, 1003 KB

english, 2007

50

Synthetic xylan-binding modules for mapping of pulp fibres and wood sections

Lada Filonova, Lavinia Cicortas Gunnarsson, Geoffrey Daniel, Mats Ohlin

Journal:

BMC Plant Biology

Year:

2007

Language:

english

File:

PDF, 3.49 MB

english, 2007

51

Systematic analysis of alternative first exons in plant genomes

Wei-Hua Chen, Guanting Lv, Congying Lv, Changqing Zeng, Songnian Hu

Journal:

BMC Plant Biology

Year:

2007

Language:

english

File:

PDF, 687 KB

english, 2007

52

Global expression analysis of nucleotide binding site-leucine rich repeat-encoding and related genes in Arabidopsis

Xiaoping Tan, Blake C Meyers, Alexander Kozik, Marilyn AL West, Michele Morgante, Dina A St Clair, Andrew F Bent, Richard W Michelmore

Journal:

BMC Plant Biology

Year:

2007

Language:

english

File:

PDF, 600 KB

english, 2007

53

Complete plastid genome sequences suggest strong selection for retention of photosynthetic genes in the parasitic plant genusCuscuta

Joel R McNeal, Jennifer V Kuehl, Jeffrey L Boore, Claude W de Pamphilis

Journal:

BMC Plant Biology

Year:

2007

Language:

english

File:

PDF, 1.47 MB

english, 2007

54

Subcellular localisation ofMedicago truncatula9/13-hydroperoxide lyase reveals a new localisation pattern and activation mechanism for CYP74C enzymes

Stefania De Domenico, Nicolas Tsesmetzis, Gian Pietro Di Sansebastiano, Richard K Hughes, Rod Casey, Angelo Santino

Journal:

BMC Plant Biology

Year:

2007

Language:

english

File:

PDF, 950 KB

english, 2007

55

Genome-wide analysis ofAux/IAAandARFgene families inPopulus trichocarpa

Udaya C Kalluri, Stephen P DiFazio, Amy M Brunner, Gerald A Tuskan

Journal:

BMC Plant Biology

Year:

2007

Language:

english

File:

PDF, 432 KB

english, 2007

56

Association of six YFP-myosin XI-tail fusions with mobile plant cell organelles

Daniel Reisen, Maureen R Hanson

Journal:

BMC Plant Biology

Year:

2007

Language:

english

File:

PDF, 3.50 MB

english, 2007

57

DNA sequence diversity and the origin of cultivated safflower (Carthamus tinctoriusL.; Asteraceae)

Mark A Chapman, John M Burke

Journal:

BMC Plant Biology

Year:

2007

Language:

english

File:

PDF, 318 KB

english, 2007

58

UV-B-induced signaling events leading to enhanced-production of catharanthine inCatharanthus roseuscell suspension cultures

Shilpa Ramani, Jayabaskaran Chelliah

Journal:

BMC Plant Biology

Year:

2007

Language:

english

File:

PDF, 1.39 MB

english, 2007

59

Analysis of cDNA libraries from developing seeds of guar (Cyamopsis tetragonoloba(L.) Taub)

Marina Naoumkina, Ivone Torres-Jerez, Stacy Allen, Ji He, Patrick X Zhao, Richard A Dixon, Gregory D May

Journal:

BMC Plant Biology

Year:

2007

Language:

english

File:

PDF, 1.10 MB

english, 2007

60

The metal tolerance profile ofThlaspi goesingenseis mimicked inArabidopsis thalianaheterologously expressing serine acetyl-transferase

John L Freeman, David E Salt

Journal:

BMC Plant Biology

Year:

2007

Language:

english

File:

PDF, 3.43 MB

english, 2007

61

LysoPC acyltransferase/PC transacylase activities in plant plasma membrane and plasma membrane-associated endoplasmic reticulum

Karin E Larsson, JMagnus Kjellberg, Henrik Tjellström, Anna Stina Sandelius

Journal:

BMC Plant Biology

Year:

2007

Language:

english

File:

PDF, 818 KB

english, 2007

62

Evolutionary conservation of plant gibberellin signalling pathway components

Filip Vandenbussche, Ana C Fierro, Gertrud Wiedemann, Ralf Reski, Dominique Van Der Straeten

Journal:

BMC Plant Biology

Year:

2007

Language:

english

File:

PDF, 1.99 MB

english, 2007

63

Sequencing analysis of 20,000 full-length cDNA clones from cassava reveals lineage specific expansions in gene families related to stress response

Tetsuya Sakurai, Germán Plata, Fausto Rodríguez-Zapata, Motoaki Seki, Andrés Salcedo, Atsushi Toyoda, Atsushi Ishiwata, Joe Tohme, Yoshiyuki Sakaki, Kazuo Shinozaki, Manabu Ishitani

Journal:

BMC Plant Biology

Year:

2007

Language:

english

File:

PDF, 539 KB

english, 2007

64

TaMSH7: A cereal mismatch repair gene that affects fertility in transgenic barley (Hordeum vulgareL.)

Andrew H Lloyd, Andrew S Milligan, Peter Langridge, Jason A Able

Journal:

BMC Plant Biology

Year:

2007

Language:

english

File:

PDF, 365 KB

english, 2007

65

ESTs from a wildArachisspecies for gene discovery and marker development

Karina Proite, Soraya CM Leal-Bertioli, David J Bertioli, Márcio C Moretzsohn, Felipe R da Silva, Natalia F Martins, Patrícia M Guimarães

Journal:

BMC Plant Biology

Year:

2007

Language:

english

File:

PDF, 323 KB

english, 2007

66

Comparative analysis of ESTs involved in grape responses toXylella fastidiosainfection

Hong Lin, Harshavardhan Doddapaneni, Yuri Takahashi, M Andrew Walker

Journal:

BMC Plant Biology

Year:

2007

Language:

english

File:

PDF, 611 KB

english, 2007

67

Characterization and transferability of microsatellite markers of the cultivated peanut (Arachis hypogaea)

Marcos A Gimenes, Andrea A Hoshino, Andrea VG Barbosa, Dario A Palmieri, Catalina R Lopes

Journal:

BMC Plant Biology

Year:

2007

Language:

english

File:

PDF, 617 KB

english, 2007

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