Volume 8; Issue 1

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BMC Plant Biology
Volume 8; Issue 1

BMC Plant Biology

Volume 8; Issue 1

1

Bioinformatic analysis of the CLE signaling peptide family

Karsten Oelkers, Nicolas Goffard, Georg F Weiller, Peter M Gresshoff, Ulrike Mathesius, Tancred Frickey

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 887 KB

english, 2008

2

Olive cultivar origin is a major cause of polymorphism for Ole e 1 pollen allergen

AbdelMounim Hamman-Khalifa, Antonio Jesús Castro, José Carlos Jiménez-López, María Isabel Rodríguez-García, de Dios Juan Alché

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 678 KB

english, 2008

3

RNAi-directed downregulation ofOsBADH2results in aroma (2-acetyl-1-pyrroline) production in rice (Oryza sativa L.)

Xiangli Niu, Wei Tang, Weizao Huang, Guangjun Ren, Qilin Wang, Di Luo, Yingyong Xiao, Shimei Yang, Feng Wang, Bao-Rong Lu, Fangyuan Gao, Tiegang Lu, Yongsheng Liu

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 1.16 MB

english, 2008

4

Pepper EST database: comprehensivein silicotool for analyzing the chili pepper (Capsicum annuum) transcriptome

Hyun-Jin Kim, Kwang-Hyun Baek, Seung-Won Lee, JungEun Kim, Bong-Woo Lee, Hye-Sun Cho, Woo Taek Kim, Doil Choi, Cheol-Goo Hur

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 648 KB

english, 2008

5

Transgenic rice expressingAllium sativumleaf agglutinin (ASAL) exhibits high-level resistance against major sap-sucking pests

Bharathi Yarasi, Vijayakumar Sadumpati, China Pasalu Immanni, Dasavantha Reddy Vudem, Venkateswara Rao Khareedu

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 702 KB

english, 2008

6

Applying genotyping (TILLING) and phenotyping analyses to elucidate gene function in a chemically induced sorghum mutant population

Zhanguo Xin, Ming Li Wang, Noelle A Barkley, Gloria Burow, Cleve Franks, Gary Pederson, John Burke

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 4.75 MB

english, 2008

7

Identification, cloning and characterization ofsis7andsis10sugar-insensitive mutants ofArabidopsis

Yadong Huang, Chun Yao Li, Kelly D Biddle, Susan I Gibson

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 731 KB

english, 2008

8

Natural variation in CBF gene sequence, gene expression and freezing tolerance in the Versailles core collection of Arabidopsis thaliana

Heather I McKhann, Carine Gery, Aurélie Bérard, Sylvie Lévêque, Ellen Zuther, Dirk K Hincha, S De Mita, Dominique Brunel, Evelyne Téoulé

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 1.06 MB

english, 2008

9

Genetic structure, diversity, and allelic richness in composite collection and reference set in chickpea (Cicer arietinumL.)

Hari D Upadhyaya, Sangam L Dwivedi, Michael Baum, Rajeev K Varshney, Sripada M Udupa, Cholenahalli LL Gowda, David Hoisington, Sube Singh

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 474 KB

english, 2008

10

A novel screening protocol for the isolation of hydrogen producingChlamydomonas reinhardtiistrains

Thilo Rühle, Anja Hemschemeier, Anastasios Melis, Thomas Happe

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 875 KB

english, 2008

11

RACK1genes regulate plant development with unequal genetic redundancy inArabidopsis

Jianjun Guo, Jin-Gui Chen

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 2.18 MB

english, 2008

12

Host-plant-mediated effects of Nadefensinon herbivore and pathogen resistance inNicotiana attenuata

Cbgowda Rayapuram, Ian T Baldwin

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 459 KB

english, 2008

13

Transcriptomic identification of candidate genes involved in sunflower responses to chilling and salt stresses based on cDNA microarray analysis

Paula Fernandez, Julio Di Rienzo, Luis Fernandez, H Esteban Hopp, Norma Paniego, Ruth A Heinz

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 640 KB

english, 2008

14

Genome-wide transcriptional analysis of super-embryogenicMedicago truncatulaexplant cultures

Nijat Imin, Nicolas Goffard, Mahira Nizamidin, Barry G Rolfe

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 1.13 MB

english, 2008

15

Molecular population genetics and gene expression analysis of duplicatedCBFgenes ofArabidopsis thaliana

Yen-Heng Lin, Shih-Ying Hwang, Po-Yen Hsu, Yu-Chung Chiang, Chun-Lin Huang, Chun-Neng Wang, Tsan-Piao Lin

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 710 KB

english, 2008

16

Exploring valid reference genes for gene expression studies inBrachypodium distachyonby real-time PCR

Shin-Young Hong, Pil Joon Seo, Moon-Sik Yang, Fengning Xiang, Chung-Mo Park

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 301 KB

english, 2008

17

Systemic resistance and lipoxygenase-related defence response induced in tomato byPseudomonas putidastrain BTP1

Adam Akram, Marc Ongena, Francéline Duby, Jacques Dommes, Philippe Thonart

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 498 KB

english, 2008

18

Transcriptomic profiling of mature embryo from an elite super-hybrid rice LYP9 and its parental lines

Xiaomeng Ge, Weihua Chen, Shuhui Song, Weiwei Wang, Songnian Hu, Jun Yu

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 3.71 MB

english, 2008

19

Large-scale collection and annotation of full-length enriched cDNAs from a model halophyte,Thellungiella halophila

Teruaki Taji, Tetsuya Sakurai, Keiichi Mochida, Atsushi Ishiwata, Atsushi Kurotani, Yasushi Totoki, Atsushi Toyoda, Yoshiyuki Sakaki, Motoaki Seki, Hirokazu Ono, Yoichi Sakata, Shigeo Tanaka, Kazuo Sh

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 344 KB

english, 2008

20

Assessment of allelic diversity in intron-containing Mal d 1 genes and their association to apple allergenicity

Zhongshan Gao, Wvande Eric Weg, Catarina I Matos, Paul Arens, Suzanne THP Bolhaar, Andre C Knulst, Yinghui Li, Karin Hoffmann-Sommergruber, Luud JWJ Gilissen

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 347 KB

english, 2008

21

Morphological and molecular characterization of a spontaneously tuberizing potato mutant: an insight into the regulatory mechanisms of tuber induction

Lukas Fischer, Helena Lipavska, Jean-Francois Hausman, Zdenek Opatrny

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 725 KB

english, 2008

22

RICD: A riceindicacDNA database resource for rice functional genomics

Tingting Lu, Xuehui Huang, Chuanrang Zhu, Tao Huang, Qiang Zhao, Kabing Xie, Lizhong Xiong, Qifa Zhang, Bin Han

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 614 KB

english, 2008

23

Development and mapping of Simple Sequence Repeat markers for pearl millet from data mining of Expressed Sequence Tags

S Senthilvel, B Jayashree, V Mahalakshmi, P Sathish Kumar, S Nakka, T Nepolean, CT Hash

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 552 KB

english, 2008

24

SNP high-throughput screening in grapevine using the SNPlex™ genotyping system

Massimo Pindo, Silvia Vezzulli, Giuseppina Coppola, Dustin A Cartwright, Andrey Zharkikh, Riccardo Velasco, Michela Troggio

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 295 KB

english, 2008

25

Arabidopsis At5g39790 encodes a chloroplast-localized, carbohydrate-binding, coiled-coil domain-containing putative scaffold protein

Elke M Lohmeier-Vogel, David Kerk, Mhairi Nimick, Susan Wrobel, Lori Vickerman, Douglas G Muench, Greg BG Moorhead

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 1.55 MB

english, 2008

26

The MYST histone acetyltransferases are essential for gametophyte development in Arabidopsis

David Latrasse, Moussa Benhamed, Yves Henry, Séverine Domenichini, Wanhui Kim, Dao-Xiu Zhou, Marianne Delarue

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 2.15 MB

english, 2008

27

Transcript profiles uncover temporal and stress-induced changes of metabolic pathways in germinating sugar beet seeds

Elena Pestsova, Juliane Meinhard, Andreas Menze, Uwe Fischer, Andrea Windhövel, Peter Westhoff

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 1.41 MB

english, 2008

28

Identification of precursor transcripts for 6 novel miRNAs expands the diversity on the genomic organisation and expression of miRNA genes in rice

Séverine Lacombe, Hiroshi Nagasaki, Carole Santi, David Duval, Benoît Piégu, Martine Bangratz, Jean-Christophe Breitler, Emmanuel Guiderdoni, Christophe Brugidou, Judith Hirsch, Xiaofeng Cao, Claire B

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 1.59 MB

english, 2008

29

A putative autonomous 20.5 kb-CACTA transposon insertion in anF3'Hallele identifies a new CACTA transposon subfamily inGlycine max

Gracia Zabala, Lila Vodkin

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 924 KB

english, 2008

30

ESKIMO1is a key gene involved in water economy as well as cold acclimation and salt tolerance

Oumaya Bouchabke-Coussa, Marie-Luce Quashie, Jose Seoane-Redondo, Marie-Noelle Fortabat, Carine Gery, Agnes Yu, Daphné Linderme, Jacques Trouverie, Fabienne Granier, Evelyne Téoulé, Mylène Durand-Tard

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 5.20 MB

english, 2008

31

The effects of nitrogen and potassium nutrition on the growth of nonembryogenic and embryogenic tissue of sweet orange (Citrus sinensis(L.) Osbeck)

Randall P Niedz, Terence J Evens

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 833 KB

english, 2008

32

A set of microsatellite markers with long core repeat optimized for grape (Vitisspp.) genotyping

Guido Cipriani, Maria Teresa Marrazzo, Gabriele Di Gaspero, Antonella Pfeiffer, Michele Morgante, Raffaele Testolin

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 1.25 MB

english, 2008

33

A SNP transferability survey within the genusVitis

Silvia Vezzulli, Diego Micheletti, Summaira Riaz, Massimo Pindo, Roberto Viola, Patrice This, Andrew M Walker, Michela Troggio, Riccardo Velasco

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 332 KB

english, 2008

34

Defence reactions in the apoplastic proteome of oilseed rape (Brassica napusvar.napus) attenuateVerticillium longisporumgrowth but not disease symptoms

Saskia Floerl, Christine Druebert, Andrzej Majcherczyk, Petr Karlovsky, Ursula Kües, Andrea Polle

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 1.02 MB

english, 2008

35

Light has a specific role in modulatingArabidopsisgene expression at low temperature

Arto J Soitamo, Mirva Piippo, Yagut Allahverdiyeva, Natalia Battchikova, Eva-Mari Aro

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 1.39 MB

english, 2008

36

A clarified position forsolanum lycopersicumvar.cerasiformein the evolutionary history of tomatoes (solanaceae)

Nicolas Ranc, Stéphane Muños, Sylvain Santoni, Mathilde Causse

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 1006 KB

english, 2008

37

Selection of internal control genes for quantitative real-time RT-PCR studies during tomato development process

Marino Expósito-Rodríguez, Andrés A Borges, Andrés Borges-Pérez, José A Pérez

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 664 KB

english, 2008

38

Elicitor-induced transcription factors for metabolic reprogramming of secondary metabolism inMedicago truncatula

Marina A Naoumkina, XianZhi He, Richard A Dixon

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 1.27 MB

english, 2008

39

The lipoxygenase gene family: a genomic fossil of shared polyploidy betweenGlycine maxandMedicago truncatula

Jin Hee Shin, Kyujung Van, Dong Hyun Kim, Kyung Do Kim, Young Eun Jang, Beom-Soon Choi, Moon Young Kim, Suk-Ha Lee

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 826 KB

english, 2008

40

ArabidopsiseIF2α kinase GCN2 is essential for growth in stress conditions and is activated by wounding

Sébastien Lageix, Elodie Lanet, Marie-Noëlle Pouch-Pélissier, Marie-Claude Espagnol, Christophe Robaglia, Jean-Marc Deragon, Thierry Pélissier

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 1.85 MB

english, 2008

41

BAC libraries construction from the ancestral diploid genomes of the allotetraploid cultivated peanut

Patricia M Guimarães, Olivier Garsmeur, Karina Proite, Soraya CM Leal-Bertioli, Guilhermo Seijo, Christian Chaine, David J Bertioli, Angelique D'Hont

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 680 KB

english, 2008

42

Analysis of non-TIR NBS-LRR resistance gene analogs inMusa acuminataColla: Isolation, RFLP marker development, and physical mapping

Robert NG Miller, David J Bertioli, Franc C Baurens, Candice MR Santos, Paulo C Alves, Natalia F Martins, Roberto C Togawa, Manoel T Souza, Georgios J Pappas

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 968 KB

english, 2008

43

Global gene expression analysis of apple fruit development from the floral bud to ripe fruit

Bart J Janssen, Kate Thodey, Robert J Schaffer, Rob Alba, Lena Balakrishnan, Rebecca Bishop, Judith H Bowen, Ross N Crowhurst, Andrew P Gleave, Susan Ledger, Steve McArtney, Franz B Pichler, Kimberley

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 1.33 MB

english, 2008

44

Cross-species EST alignments reveal novel and conserved alternative splicing events in legumes

Bing-Bing Wang, Mike O'Toole, Volker Brendel, Nevin D Young

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 388 KB

english, 2008

45

Characterization of paralogous protein families in rice

Haining Lin, Shu Ouyang, Amy Egan, Kan Nobuta, Brian J Haas, Wei Zhu, Xun Gu, Joana C Silva, Blake C Meyers, C Robin Buell

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 449 KB

english, 2008

46

Transcriptional analysis ofPinus sylvestrisroots challenged with the ectomycorrhizal fungusLaccaria bicolor

Gregory Heller, Aleksandra Adomas, Guosheng Li, Jason Osborne, Len van Zyl, Ron Sederoff, Roger D Finlay, Jan Stenlid, Frederick O Asiegbu

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 741 KB

english, 2008

47

Characterization of phenylpropanoid pathway genes within European maize (Zea maysL.) inbreds

Jeppe Reitan Andersen, Imad Zein, Gerhard Wenzel, Birte Darnhofer, Joachim Eder, Milena Ouzunova, Thomas Lübberstedt

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 470 KB

english, 2008

48

Development of a novel data mining tool to findcis-elements in rice gene promoter regions

Koji Doi, Aeni Hosaka, Toshifumi Nagata, Kouji Satoh, Kohji Suzuki, Ramil Mauleon, Michael J Mendoza, Richard Bruskiewich, Shoshi Kikuchi

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 496 KB

english, 2008

49

Transcriptional profiling ofMedicago truncatulameristematic root cells

Peta Holmes, Nicolas Goffard, Georg F Weiller, Barry G Rolfe, Nijat Imin

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 474 KB

english, 2008

50

AtMRP6/AtABCC6, an ATP-Binding Cassette transporter gene expressed during early steps of seedling development and up-regulated by cadmium inArabidopsis thaliana

Stéphane Gaillard, Hélène Jacquet, Alain Vavasseur, Nathalie Leonhardt, Cyrille Forestier

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 1.02 MB

english, 2008

51

VitisExpDB: A database resource for grape functional genomics

Harshavardhan Doddapaneni, Hong Lin, M Andrew Walker, Jiqiang Yao, Edwin L Civerolo

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 866 KB

english, 2008

52

Co-expression and promoter content analyses assign a role in biotic and abiotic stress responses to plant natriuretic peptides

Stuart Meier, René Bastian, Lara Donaldson, Shane Murray, Vladimir Bajic, Chris Gehring

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 440 KB

english, 2008

53

Identification of novel and candidate miRNAs in rice by high throughput sequencing

Ramanjulu Sunkar, Xuefeng Zhou, Yun Zheng, Weixiong Zhang, Jian-Kang Zhu

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 530 KB

english, 2008

54

Rice Yellow Mottle Virus stress responsive genes from susceptible and tolerant rice genotypes

Marjolaine Ventelon-Debout, Christine Tranchant-Dubreuil, Thi-Thu-Huang Nguyen, Martine Bangratz, Christelle Siré, Michel Delseny, Christophe Brugidou

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 439 KB

english, 2008

55

Analysis of tall fescue ESTs representing different abiotic stresses, tissue types and developmental stages

MA Rouf Mian, Yan Zhang, Zeng-Yu Wang, Ji-Yi Zhang, Xiaofei Cheng, Lei Chen, Konstantin Chekhovskiy, Xinbin Dai, Chunhong Mao, Foo Cheung, Xuechun Zhao, Ji He, Angela D Scott, Christopher D Town, Greg

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 518 KB

english, 2008

56

Rapid EST isolation from chromosome 1R of rye

Ruo-Nan Zhou, Rui Shi, Shu-Mei Jiang, Wei-Bo Yin, Huang-Huang Wang, Yu-Hong Chen, Jun Hu, Richard RC Wang, Xiang-Qi Zhang, Zan-Min Hu

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 526 KB

english, 2008

57

The soybean-Phytophthora resistance locusRps1-k encompasses coiled coil-nucleotide binding-leucine rich repeat-like genes and repetitive sequences

Hongyu Gao, Madan K Bhattacharyya

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 886 KB

english, 2008

58

Different subcellular localizations and functions of Arabidopsis myosin VIII

Lior Golomb, Mohamad Abu-Abied, Eduard Belausov, Einat Sadot

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 3.15 MB

english, 2008

59

Two alternative recessive quantitative trait loci influence resistance to spring black stem and leaf spot inMedicago truncatula

Lars G Kamphuis, Judith Lichtenzveig, Richard P Oliver, Simon R Ellwood

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 435 KB

english, 2008

60

Construction of nested genetic core collections to optimize the exploitation of natural diversity inVitis viniferaL. subsp.sativa

Loïc Le Cunff, Alexandre Fournier-Level, Valérie Laucou, Silvia Vezzulli, Thierry Lacombe, Anne-Françoise Adam-Blondon, Jean-Michel Boursiquot, Patrice This

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 419 KB

english, 2008

61

Spatial distribution of transcript changes in the maize primary root elongation zone at low water potential

William G Spollen, Wenjing Tao, Babu Valliyodan, Kegui Chen, Lindsey G Hejlek, Jong-Joo Kim, Mary E LeNoble, Jinming Zhu, Hans J Bohnert, David Henderson, Daniel P Schachtman, Georgia E Davis, Gordon

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 733 KB

english, 2008

62

Gene expression analyses in maize inbreds and hybrids with varying levels of heterosis

Robert M Stupar, Jack M Gardiner, Aaron G Oldre, William J Haun, Vicki L Chandler, Nathan M Springer

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 780 KB

english, 2008

63

Comparative BAC end sequence analysis of tomato and potato reveals overrepresentation of specific gene families in potato

Erwin Datema, Lukas A Mueller, Robert Buels, James J Giovannoni, Richard GF Visser, Willem J Stiekema, Roeland CHJ van Ham

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 383 KB

english, 2008

64

Arabidopsis thalianaouter ovule integument morphogenesis: Ectopic expression ofKNAT1reveals a compensation mechanism

Elisabeth Truernit, Jim Haseloff

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 5.08 MB

english, 2008

65

Phenotypic instability ofArabidopsisalleles affecting a diseaseResistancegene cluster

Hankuil Yi, Eric J Richards

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 913 KB

english, 2008

66

In silicoidentification of conserved microRNAs in large number of diverse plant species

Ramanjulu Sunkar, Guru Jagadeeswaran

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 467 KB

english, 2008

67

Berry and phenology-related traits in grapevine (Vitis viniferaL.): From Quantitative Trait Loci to underlying genes

Laura Costantini, Juri Battilana, Flutura Lamaj, Girolamo Fanizza, Maria Stella Grando

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 571 KB

english, 2008

68

Metabolic pathways of the wheat (Triticum aestivum) endosperm amyloplast revealed by proteomics

Frances M Dupont

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 434 KB

english, 2008

69

Evolution of the C4phosphoenolpyruvate carboxylase promoter of the C4speciesFlaveria trinervia: the role of the proximal promoter region

Sascha Engelmann, Corinna Zogel, Maria Koczor, Ute Schlue, Monika Streubel, Peter Westhoff

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 1.63 MB

english, 2008

70

Ornithine-δ-aminotransferase is essential for Arginine Catabolism but not for Proline Biosynthesis

Dietmar Funck, Bettina Stadelhofer, Wolfgang Koch

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 797 KB

english, 2008

71

The IBR5 phosphatase promotes Arabidopsis auxin responses through a novel mechanism distinct from TIR1-mediated repressor degradation

Lucia C Strader, Melanie Monroe-Augustus, Bonnie Bartel

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 1.14 MB

english, 2008

72

Overexpression of mtDNA-associated AtWhy2 compromises mitochondrial function

Alexandre Maréchal, Jean-Sébastien Parent, Mohammed Sabar, Félix Véronneau-Lafortune, Charbel Abou-Rached, Normand Brisson

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 1.66 MB

english, 2008

73

A spatial dissection of the Arabidopsis floral transcriptome by MPSS

Jason A Peiffer, Shail Kaushik, Hajime Sakai, Mario Arteaga-Vazquez, Nidia Sanchez-Leon, Hassan Ghazal, Jean-Philippe Vielle-Calzada, Blake C Meyers

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 815 KB

english, 2008

74

Characterisation of the tryptophan synthase alpha subunit in maize

Verena Kriechbaumer, Linda Weigang, Andreas Fießelmann, Thomas Letzel, Monika Frey, Alfons Gierl, Erich Glawischnig

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 1.72 MB

english, 2008

75

Unexpected complexity of the Aquaporin gene family in the mossPhyscomitrella patens

Jonas ÅH Danielson, Urban Johanson

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 588 KB

english, 2008

76

Transcriptomic changes induced by acute ozone in resistant and sensitiveMedicago truncatulaaccessions

Michael C Puckette, Yuhong Tang, Ramamurthy Mahalingam

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 707 KB

english, 2008

77

An extensive (co-)expression analysis tool for the cytochrome P450 superfamily inArabidopsis thaliana

Jürgen Ehlting, Vincent Sauveplane, Alexandre Olry, Jean-François Ginglinger, Nicholas J Provart, Danièle Werck-Reichhart

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 1.47 MB

english, 2008

78

The redox-sensitive transcription factor Rap2.4a controls nuclear expression of 2-Cys peroxiredoxin A and other chloroplast antioxidant enzymes

Jehad Shaikhali, Isabelle Heiber, Thorsten Seidel, Elke Ströher, Heiko Hiltscher, Stefan Birkmann, Karl-Josef Dietz, Margarete Baier

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 889 KB

english, 2008

79

The SNF1-type serine-threonine protein kinaseSAPK4regulates stress-responsive gene expression in rice

Calliste J Diédhiou, Olga V Popova, Karl-Josef Dietz, Dortje Golldack

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 634 KB

english, 2008

80

Quantitative1H NMR metabolomics reveals extensive metabolic reprogramming of primary and secondary metabolism in elicitor-treated opium poppy cell cultures

Katherine G Zulak, Aalim M Weljie, Hans J Vogel, Peter J Facchini

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 3.43 MB

english, 2008

81

Cupin: A candidate molecular structure for the Nep1-like protein family

Adelmo L Cechin, Marialva Sinigaglia, Ney Lemke, Sérgio Echeverrigaray, Odalys G Cabrera, Gonçalo AG Pereira, José CM Mombach

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 1.09 MB

english, 2008

82

Development of new genomic microsatellite markers from robusta coffee (Coffea canephoraPierre ex A. Froehner) showing broad cross-species transferability and utility in genetic studies

Prasad Suresh Hendre, Regur Phanindranath, V Annapurna, Albert Lalremruata, Ramesh K Aggarwal

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 456 KB

english, 2008

83

A flax fibre proteome: identification of proteins enriched in bast fibres

Naomi SC Hotte, Michael K Deyholos

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 717 KB

english, 2008

84

Control of trichome branching by Chromatin Assembly Factor-1

Vivien Exner, Wilhelm Gruissem, Lars Hennig

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 1.10 MB

english, 2008

85

Isolation and characterization of novel microsatellite markers and their application for diversity assessment in cultivated groundnut (Arachis hypogaea)

Luu M Cuc, Emma S Mace, Jonathan H Crouch, Vu D Quang, Tran D Long, Rajeev K Varshney

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 363 KB

english, 2008

86

Complementation of a phycocyanin-bilin lyase fromSynechocystissp. PCC 6803 with a nucleomorph-encoded open reading frame from the cryptophyteGuillardia theta

Kathrin Bolte, Oliver Kawach, Julia Prechtl, Nicole Gruenheit, Julius Nyalwidhe, Uwe-G Maier

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 581 KB

english, 2008

87

Insight into the early steps of root hair formation revealed by theprocuste1cellulose synthase mutant ofArabidopsis thaliana

Sunil K Singh, Urs Fischer, Manoj Singh, Markus Grebe, Alan Marchant

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 847 KB

english, 2008

88

Constitutive Expressor of Pathogenesis-Related Genes5affects cell wall biogenesis and trichome development

Ginger Brininstool, Remmy Kasili, L Alice Simmons, Viktor Kirik, Martin Hülskamp, John C Larkin

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 1.17 MB

english, 2008

89

Comparative chloroplast genomics and phylogenetics ofFagopyrum esculentumssp.ancestrale– A wild ancestor of cultivated buckwheat

Maria D Logacheva, Tahir H Samigullin, Amit Dhingra, Aleksey A Penin

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 792 KB

english, 2008

90

A high-throughput screening system for barley/powdery mildew interactions based on automated analysis of light micrographs

Alexander Ihlow, Patrick Schweizer, Udo Seiffert

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 886 KB

english, 2008

91

Pectic homogalacturonan masks abundant sets of xyloglucan epitopes in plant cell walls

Susan E Marcus, Yves Verhertbruggen, Cécile Hervé, José J Ordaz-Ortiz, Vladimir Farkas, Henriette L Pedersen, William GT Willats, JPaul Knox

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 2.41 MB

english, 2008

92

Global expression profiling in leaves of free-growing aspen

Andreas Sjödin, Kirsten Wissel, Max Bylesjö, Johan Trygg, Stefan Jansson

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 633 KB

english, 2008

93

Oil palm (Elaeis guineensisJacq.) tissue culture ESTs: Identifying genes associated with callogenesis and embryogenesis

Eng-Ti L Low, Halimah Alias, Soo-Heong Boon, Elyana M Shariff, Chi-Yee A Tan, Leslie CL Ooi, Suan-Choo Cheah, Abdul-Rahim Raha, Kiew-Lian Wan, Rajinder Singh

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 1.55 MB

english, 2008

94

Rapid and dynamic subcellular reorganization following mechanical stimulation ofArabidopsisepidermal cells mimics responses to fungal and oomycete attack

Adrienne R Hardham, Daigo Takemoto, Rosemary G White

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 12.27 MB

english, 2008

95

Loss of the N-terminal domain of chlorophyllideaoxygenase induces photodamage during greening of Arabidopsis seedlings

Akihiro Yamasato, Ryouichi Tanaka, Ayumi Tanaka

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 3.38 MB

english, 2008

96

The effects of enhanced methionine synthesis on amino acid and anthocyanin content of potato tubers

Gábor Dancs, Mihály Kondrák, Zsófia Bánfalvi

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 443 KB

english, 2008

97

A physical map of the heterozygous grapevine 'Cabernet Sauvignon' allows mapping candidate genes for disease resistance

Marco Moroldo, Sophie Paillard, Raffaella Marconi, Legeai Fabrice, Aurelie Canaguier, Corinne Cruaud, Veronique De Berardinis, Cecile Guichard, Veronique Brunaud, Isabelle Le Clainche, Simone Scalabri

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 1.10 MB

english, 2008

98

Synteny conservation between two distantly-related Rosaceae genomes:Prunus(the stone fruits) andFragaria(the strawberry)

Santiago Vilanova, Daniel J Sargent, Pere Arús, Amparo Monfort

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 491 KB

english, 2008

99

Roles ofArabidopsisWRKY3 and WRKY4 Transcription Factors in Plant Responses to Pathogens

Zhibing Lai, KM Vinod, Zuyu Zheng, Baofang Fan, Zhixiang Chen

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 1.83 MB

english, 2008

100

A blackberry (RubusL.) expressed sequence tag library for the development of simple sequence repeat markers

Kim S Lewers, Chris A Saski, Brandon J Cuthbertson, David C Henry, Meg E Staton, Dorrie S Main, Anik L Dhanaraj, Lisa J Rowland, Jeff P Tomkins

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 244 KB

english, 2008

101

Identification of Single Nucleotide Polymorphisms and analysis of Linkage Disequilibrium in sunflower elite inbred lines using the candidate gene approach

Corina M Fusari, Verónica V Lia, H Esteban Hopp, Ruth A Heinz, Norma B Paniego

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 611 KB

english, 2008

102

Complete nucleotide sequence of theCryptomeria japonicaD. Don. chloroplast genome and comparative chloroplast genomics: diversified genomic structure of coniferous species

Tomonori Hirao, Atsushi Watanabe, Manabu Kurita, Teiji Kondo, Katsuhiko Takata

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 609 KB

english, 2008

103

Expression of cell wall related genes in basal and ear internodes of silkingbrown-midrib-3, caffeic acidO-methyltransferase (COMT) down-regulated, and normal maize plants

Sabine Guillaumie, Deborah Goffner, Odile Barbier, Jean-Pierre Martinant, Magalie Pichon, Yves Barrière

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 531 KB

english, 2008

104

TriMEDB: A database to integrate transcribed markers and facilitate genetic studies of the tribe Triticeae

Keiichi Mochida, Daisuke Saisho, Takuhiro Yoshida, Tetsuya Sakurai, Kazuo Shinozaki

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 779 KB

english, 2008

105

Transcriptional profiling of the pea shoot apical meristem reveals processes underlying its function and maintenance

Chui E Wong, Prem L Bhalla, Harald Ottenhof, Mohan B Singh

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 753 KB

english, 2008

106

Head-neck domain ofArabidopsismyosin XI, MYA2, fused with GFP produces F-actin patterns that coincide with fast organelle streaming in different plant cells

Nadine Walter, Carola L Holweg

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 808 KB

english, 2008

107

Vv-AMP1, a ripening induced peptide fromVitis viniferashows strong antifungal activity

Abré de Beer, Melané A Vivier

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 1.88 MB

english, 2008

108

Articulation of three core metabolic processes in Arabidopsis: Fatty acid biosynthesis, leucine catabolism and starch metabolism

Wieslawa I Mentzen, Jianling Peng, Nick Ransom, Basil J Nikolau, Eve Syrkin Wurtele

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 2.74 MB

english, 2008

109

TheArabidopsis thalianaresponse regulator ARR22 is a putative AHP phospho-histidine phosphatase expressed in the chalaza of developing seeds

Jakub Horák, Christopher Grefen, Kenneth W Berendzen, Achim Hahn, York-Dieter Stierhof, Bettina Stadelhofer, Mark Stahl, Csaba Koncz, Klaus Harter

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 3.59 MB

english, 2008

110

Variation in DNA methylation patterns of grapevine somaclones (Vitis vinifera L.)

Paul Schellenbaum, Volker Mohler, Gerhard Wenzel, Bernard Walter

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 525 KB

english, 2008

111

Correlation between amino acid residues converted by RNA editing and functional residues in protein three-dimensional structures in plant organelles

Kei Yura, Mitiko Go

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 503 KB

english, 2008

112

Sgt1, but notRar1, is essential for theRB-mediated broad-spectrum resistance to potato late blight

Pudota B Bhaskar, John A Raasch, Lara C Kramer, Pavel Neumann, Susan M Wielgus, Sandra Austin-Phillips, Jiming Jiang

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 664 KB

english, 2008

113

Quantitative analysis of changes in actin microfilament contribution to cell plate development in plant cytokinesis

Takumi Higaki, Natsumaro Kutsuna, Toshio Sano, Seiichiro Hasezawa

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 4.07 MB

english, 2008

114

Comprehensive analysis of single-repeat R3 MYB proteins in epidermal cell patterning and their transcriptional regulation in Arabidopsis

Shucai Wang, Leah Hubbard, Ying Chang, Jianjun Guo, John Schiefelbein, Jin-Gui Chen

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 1.11 MB

english, 2008

115

LAMINA: a tool for rapid quantification of leaf size and shape parameters

Max Bylesjö, Vincent Segura, Raju Y Soolanayakanahally, Anne M Rae, Johan Trygg, Petter Gustafsson, Stefan Jansson, Nathaniel R Street

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 617 KB

english, 2008

116

Analysis of the grapeMYB R2R3subfamily reveals expanded wine quality-related clades and conserved gene structure organization acrossVitisandArabidopsisgenomes

José Tomás Matus, Felipe Aquea, Patricio Arce-Johnson

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 1.19 MB

english, 2008

117

Genomic and expression analysis of glycosyl hydrolase family 35 genes from rice (Oryza sativaL.)

Waraporn Tanthanuch, Mallika Chantarangsee, Janjira Maneesan, James Ketudat-Cairns

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 649 KB

english, 2008

118

Plant-like substitutions in the large-subunit carboxy terminus ofChlamydomonasRubisco increase CO2/O2Specificity

Sriram Satagopan, Robert J Spreitzer

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 907 KB

english, 2008

119

The plant Apolipoprotein D ortholog protectsArabidopsisagainst oxidative stress

Jean-Benoit F Charron, Francois Ouellet, Mario Houde, Fathey Sarhan

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 5.08 MB

english, 2008

120

Transcriptional responses ofArabidopsis thalianaplants to As (V) stress

Jason M Abercrombie, Matthew D Halfhill, Priya Ranjan, Murali R Rao, Arnold M Saxton, Joshua S Yuan, C Neal Stewart

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 465 KB

english, 2008

121

Relationship between homoeologous regulatory and structural genes in allopolyploid genome – A case study in bread wheat

Elena K Khlestkina, Marion S Röder, Elena A Salina

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 503 KB

english, 2008

122

Physiological and molecular characterization of aluminum resistance inMedicago truncatula

Divya Chandran, Natasha Sharopova, Kathryn A VandenBosch, David F Garvin, Deborah A Samac

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 2.03 MB

english, 2008

123

TILLING to detect induced mutations in soybean

Jennifer L Cooper, Bradley J Till, Robert G Laport, Margaret C Darlow, Justin M Kleffner, Aziz Jamai, Tarik El-Mellouki, Shiming Liu, Rae Ritchie, Niels Nielsen, Kristin D Bilyeu, Khalid Meksem, Luca

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 1.89 MB

english, 2008

124

Survey of extrachromosomal circular DNA derived from plant satellite repeats

Alice Navrátilová, Andrea Koblížková, Jiří Macas

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 1.47 MB

english, 2008

125

Transcriptional profiling of peaABR17mediated changes in gene expression inArabidopsis thaliana

Sowmya S Krishnaswamy, Sanjeeva Srivastava, Mohsen Mohammadi, Muhammad H Rahman, Michael K Deyholos, Nat NV Kav

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 2.71 MB

english, 2008

126

Natural variation in DNA methylation in ribosomal RNA genes ofArabidopsis thaliana

Hye Ryun Woo, Eric J Richards

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 1.49 MB

english, 2008

127

Small RNA regulation of ovule development in the cotton plant,G. hirsutumL

Ibrokhim Y Abdurakhmonov, Eric J Devor, Zabardast T Buriev, Lingyan Huang, Abdusalom Makamov, Shukhrat E Shermatov, Tohir Bozorov, Fakhriddin N Kushanov, Gafurjon T Mavlonov, Abdusattor Abdukarimov

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 503 KB

english, 2008

128

A new picture of cell wall protein dynamics in elongating cells ofArabidopsis thaliana: Confirmed actors and newcomers

Muhammad Irshad, Hervé Canut, Gisèle Borderies, Rafael Pont-Lezica, Elisabeth Jamet

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 1.42 MB

english, 2008

129

A first survey of the rye (Secale cereale) genome composition through BAC end sequencing of the short arm of chromosome 1R

Jan Bartoš, Etienne Paux, Robert Kofler, Miroslava Havránková, David Kopecký, Pavla Suchánková, Jan Šafář, Hana Šimková, Christopher D Town, Tamas Lelley, Catherine Feuillet, Jaroslav Doležel

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 1.25 MB

english, 2008

130

Overlapping functions of the starch synthases SSII and SSIII in amylopectin biosynthesis inArabidopsis

Xiaoli Zhang, Nicolas Szydlowski, David Delvallé, Christophe D'Hulst, Martha G James, Alan M Myers

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 2.01 MB

english, 2008

131

Transferability and polymorphism of barley EST-SSR markers used for phylogenetic analysis inHordeum chilense

Almudena Castillo, Hikmet Budak, Rajeev K Varshney, Gabriel Dorado, Andreas Graner, Pilar Hernandez

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 491 KB

english, 2008

132

Cloning, characterisation and comparative analysis of a starch synthase IV gene in wheat: functional and evolutionary implications

Marina Leterrier, Lynn D Holappa, Karen E Broglie, Diane M Beckles

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 2.78 MB

english, 2008

133

Regulon organization of Arabidopsis

Wieslawa I Mentzen, Eve Syrkin Wurtele

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 2.64 MB

english, 2008

134

Comparative expression profiling in grape (Vitis vinifera) berries derived from frequency analysis of ESTs and MPSS signatures

Alberto Iandolino, Kan Nobuta, Francisco Goes da Silva, Douglas R Cook, Blake C Meyers

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 354 KB

english, 2008