Volume 4; Issue 1

npj Biofilms and Microbiomes

Volume 4; Issue 1

1

Advantages of meta-total RNA sequencing (MeTRS) over shotgun metagenomics and amplicon-based sequencing in the profiling of complex microbial communities

Cottier, Fabien, Srinivasan, Kandhadayar Gopalan, Yurieva, Marina, Liao, Webber, Poidinger, Michael, Zolezzi, Francesca, Pavelka, Norman

Journal:

npj Biofilms and Microbiomes

Year:

2018

Language:

english

File:

PDF, 936 KB

english, 2018

2

Coastal urbanisation affects microbial communities on a dominant marine holobiont

Marzinelli, Ezequiel M., Qiu, Zhiguang, Dafforn, Katherine A., Johnston, Emma L., Steinberg, Peter D., Mayer-Pinto, Mariana

Journal:

npj Biofilms and Microbiomes

Year:

2018

Language:

english

File:

PDF, 1.41 MB

english, 2018

3

Tools for studying growth patterns and chemical dynamics of aggregated Pseudomonas aeruginosa exposed to different electron acceptors in an alginate bead model

Sønderholm, Majken, Koren, Klaus, Wangpraseurt, Daniel, Jensen, Peter Østrup, Kolpen, Mette, Kragh, Kasper Nørskov, Bjarnsholt, Thomas, Kühl, Michael

Journal:

npj Biofilms and Microbiomes

Year:

2018

Language:

english

File:

PDF, 1.89 MB

english, 2018

4

Precision antimicrobial therapeutics: the path of least resistance?

Spaulding, Caitlin N., Klein, Roger D., Schreiber, Henry L., Janetka, James W., Hultgren, Scott J.

Journal:

npj Biofilms and Microbiomes

Year:

2018

Language:

english

File:

PDF, 2.02 MB

english, 2018

5

Net growth rate of continuum heterogeneous biofilms with inhibition kinetics

Gonzo, Elio Emilio, Wuertz, Stefan, Rajal, Veronica B.

Journal:

npj Biofilms and Microbiomes

Year:

2018

Language:

english

File:

PDF, 828 KB

english, 2018

6

Ugly ducklings—the dark side of plastic materials in contact with potable water

Neu, Lisa, Bänziger, Carola, Proctor, Caitlin R., Zhang, Ya, Liu, Wen-Tso, Hammes, Frederik

Journal:

npj Biofilms and Microbiomes

Year:

2018

Language:

english

File:

PDF, 1.52 MB

english, 2018

7

How do environment-dependent switching rates between susceptible and persister cells affect the dynamics of biofilms faced with antibiotics?

Carvalho, Gabriel, Balestrino, Damien, Forestier, Christiane, Mathias, Jean-Denis

Journal:

npj Biofilms and Microbiomes

Year:

2018

Language:

english

File:

PDF, 2.70 MB

english, 2018

8

Micro-CT X-ray imaging exposes structured diffusion barriers within biofilms

Keren-Paz, Alona, Brumfeld, Vlad, Oppenheimer-Shaanan, Yaara, Kolodkin-Gal, Ilana

Journal:

npj Biofilms and Microbiomes

Year:

2018

Language:

english

File:

PDF, 1.03 MB

english, 2018

9

Fighting biofilms with lantibiotics and other groups of bacteriocins

Mathur, Harsh, Field, Des, Rea, Mary C., Cotter, Paul D., Hill, Colin, Ross, R. Paul

Journal:

npj Biofilms and Microbiomes

Year:

2018

Language:

english

File:

PDF, 1.27 MB

english, 2018

10

A Tad pilus promotes the establishment and resistance of Vibrio vulnificus biofilms to mechanical clearance

Pu, Meng, Rowe-Magnus, Dean Allistair

Journal:

npj Biofilms and Microbiomes

Year:

2018

Language:

english

File:

PDF, 2.04 MB

english, 2018

11

Daily rhythmicity in coastal microbial mats

Hörnlein, Christine, Confurius-Guns, Veronique, Stal, Lucas J., Bolhuis, Henk

Journal:

npj Biofilms and Microbiomes

Year:

2018

Language:

english

File:

PDF, 1.04 MB

english, 2018

12

Aggregatibacter actinomycetemcomitans H-NS promotes biofilm formation and alters protein dynamics of other species within a polymicrobial oral biofilm

Bao, Kai, Bostanci, Nagihan, Thurnheer, Thomas, Grossmann, Jonas, Wolski, Witold E., Thay, Bernard, Belibasakis, Georgios N., Oscarsson, Jan

Journal:

npj Biofilms and Microbiomes

Year:

2018

Language:

english

File:

PDF, 2.29 MB

english, 2018

13

Targeted disruption of the extracellular polymeric network of Pseudomonas aeruginosa biofilms by alginate oligosaccharides

Powell, Lydia C., Pritchard, Manon F., Ferguson, Elaine L., Powell, Kate A., Patel, Shree U., Rye, Phil D., Sakellakou, Stavroula-Melina, Buurma, Niklaas J., Brilliant, Charles D., Copping, Jack M., M

Journal:

npj Biofilms and Microbiomes

Year:

2018

Language:

english

File:

PDF, 3.28 MB

english, 2018

14

Evolutionary conservation of the antimicrobial function of mucus: a first defence against infection

Bakshani, Cassie R, Morales-Garcia, Ana L, Althaus, Mike, Wilcox, Matthew D, Pearson, Jeffrey P, Bythell, John C, Burgess, J Grant

Journal:

npj Biofilms and Microbiomes

Year:

2018

Language:

english

File:

PDF, 1.72 MB

english, 2018

15

Effect of divalent ions and a polyphosphate on composition, structure, and stiffness of simulated drinking water biofilms

Shen, Yun, Huang, Pin Chieh, Huang, Conghui, Sun, Peng, Monroy, Guillermo L., Wu, Wenjing, Lin, Jie, Espinosa-Marzal, Rosa M., Boppart, Stephen A., Liu, Wen-Tso, Nguyen, Thanh H.

Journal:

npj Biofilms and Microbiomes

Year:

2018

Language:

english

File:

PDF, 1.55 MB

english, 2018

16

Removal of Staphylococcus aureus from skin using a combination antibiofilm approach

Wang, Yi, Tan, Xiaojuan, Xi, Chuanwu, Phillips, K. Scott

Journal:

npj Biofilms and Microbiomes

Year:

2018

Language:

english

File:

PDF, 1.58 MB

english, 2018

17

Towards standardized mechanical characterization of microbial biofilms: analysis and critical review

Boudarel, Héloïse, Mathias, Jean-Denis, Blaysat, Benoît, Grédiac, Michel

Journal:

npj Biofilms and Microbiomes

Year:

2018

Language:

english

File:

PDF, 2.26 MB

english, 2018

18

Author Correction: Redox-active conducting polymers modulate Salmonella biofilm formation by controlling availability of electron acceptors

Gomez-Carretero, Salvador, Libberton, Ben, Svennersten, Karl, Persson, Kristin, Jager, Edwin, Berggren, Magnus, Rhen, Mikael, Richter-Dahlfors, Agneta

Journal:

npj Biofilms and Microbiomes

Year:

2018

Language:

english

File:

PDF, 331 KB

english, 2018

19

GePMI: A statistical model for personal intestinal microbiome identification

Wang, Zicheng, Lou, Huazhe, Wang, Ying, Shamir, Ron, Jiang, Rui, Chen, Ting

Journal:

npj Biofilms and Microbiomes

Year:

2018

Language:

english

File:

PDF, 1.66 MB

english, 2018

20

Comparisons of gut microbiota profiles in wild-type and gelatinase B/matrix metalloproteinase-9-deficient mice in acute DSS-induced colitis

de Bruyn, Magali, Sabino, João, Vandeputte, Doris, Vermeire, Séverine, Raes, Jeroen, Opdenakker, Ghislain

Journal:

npj Biofilms and Microbiomes

Year:

2018

Language:

english

File:

PDF, 1.98 MB

english, 2018

21

3D bacterial cellulose biofilms formed by foam templating

Rühs, Patrick A., Storz, Flavian, López Gómez, Yuly A., Haug, Matthias, Fischer, Peter

Journal:

npj Biofilms and Microbiomes

Year:

2018

Language:

english

File:

PDF, 1.20 MB

english, 2018

22

Rhamnolipids from Pseudomonas aeruginosa disperse the biofilms of sulfate-reducing bacteria

Wood, Thammajun L., Gong, Ting, Zhu, Lei, Miller, James, Miller, Daniel S., Yin, Bei, Wood, Thomas K.

Journal:

npj Biofilms and Microbiomes

Year:

2018

Language:

english

File:

PDF, 1.29 MB

english, 2018

23

Mucins trigger dispersal of Pseudomonas aeruginosa biofilms

Co, Julia Y., Cárcamo-Oyarce, Gerardo, Billings, Nicole, Wheeler, Kelsey M., Grindy, Scott C., Holten-Andersen, Niels, Ribbeck, Katharina

Journal:

npj Biofilms and Microbiomes

Year:

2018

Language:

english

File:

PDF, 3.32 MB

english, 2018

24

The effect of the stress hormone cortisol on the metatranscriptome of the oral microbiome

Duran-Pinedo, Ana E., Solbiati, Jose, Frias-Lopez, Jorge

Journal:

npj Biofilms and Microbiomes

Year:

2018

Language:

english

File:

PDF, 1.17 MB

english, 2018

25

Disintegration of simulated drinking water biofilms with arrays of microchannel plasma jets

Sun, Peter P., Araud, Elbashir M., Huang, Conghui, Shen, Yun, Monroy, Guillermo L., Zhong, Shengyun, Tong, Zikang, Boppart, Stephen A., Eden, J. Gary, Nguyen, Thanh H.

Journal:

npj Biofilms and Microbiomes

Year:

2018

Language:

english

File:

PDF, 3.37 MB

english, 2018

26

Rapid diagnostic assay for detection of cellulose in urine as biomarker for biofilm-related urinary tract infections

Antypas, Haris, Choong, Ferdinand X., Libberton, Ben, Brauner, Annelie, Richter-Dahlfors, Agneta

Journal:

npj Biofilms and Microbiomes

Year:

2018

Language:

english

File:

PDF, 772 KB

english, 2018

27

Lactobacillus elicits a 'Marmite effect' on the chicken cecal microbiome

Zou, Angela, Sharif, Shayan, Parkinson, John

Journal:

npj Biofilms and Microbiomes

Year:

2018

Language:

english

File:

PDF, 2.96 MB

english, 2018

28

Oxidative stress in the oral cavity is driven by individual-specific bacterial communities

Džunková, Mária, Martinez-Martinez, Daniel, Gardlík, Roman, Behuliak, Michal, Janšáková, Katarína, Jiménez, Nuria, Vázquez-Castellanos, Jorge F., Martí, Jose Manuel, D’Auria, Giuseppe, Bandara, H. M.

Journal:

npj Biofilms and Microbiomes

Year:

2018

Language:

english

File:

PDF, 2.11 MB

english, 2018

29

Author Correction: GePMI: a statistical model for personal intestinal microbiome identification

Wang, Zicheng, Lou, Huazhe, Wang, Ying, Shamir, Ron, Jiang, Rui, Chen, Ting

Journal:

npj Biofilms and Microbiomes

Year:

2018

Language:

english

File:

PDF, 325 KB

english, 2018

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