Volume 3

Cancer Informatics

Volume 3

1

Germinal Center B Cell-Like (GCB) and Activated B Cell-Like (ABC) Type of Diffuse Large B Cell Lymphoma (DLBCL): Analysis of Molecular Predictors, Signatures, Cell Cycle State and Patient Survival

Blenk, S., Engelmann, J., Weniger, M., Schultz, J., Dittrich, M., Rosenwald, A., Müller-Hermelink, H.K., Müller, T., Dandekar, T.

Journal:

Cancer Informatics

Year:

2007

Language:

english

File:

PDF, 1.85 MB

english, 2007

2

Analysis of Gene Expression Data Using BRB-Array Tools

Simon, Richard, Lam, Amy, Li, Ming-Chung, Ngan, Michael, Menenzes, Supriya, Zhao, Yingdong

Journal:

Cancer Informatics

Year:

2007

Language:

english

File:

PDF, 329 KB

english, 2007

3

Comparison of Computational Algorithms for the Classification of Liver Cancer using SELDI Mass Spectrometry: A Case Study

Shen, Changyu, Breen, Timothy E, Dobrolecki, Lacey E, Schmidt, C. Max, Sledge, George W., Miller, Kathy D., Hickey, Robert J

Journal:

Cancer Informatics

Year:

2007

Language:

english

File:

PDF, 488 KB

english, 2007

4

Estimating the False Discovery Rate Using Mixed Normal Distribution for Identifying Differentially Expressed Genes in Microarray Data Analysis

Hirakawa, Akihiro, Sato, Yasunori, Sozu, Takashi, Hamada, Chikuma, Yoshimura, Isao

Journal:

Cancer Informatics

Year:

2007

Language:

english

File:

PDF, 315 KB

english, 2007

5

The Roles of β-Tubulin Mutations and Isotype Expression in Acquired Drug Resistance

Huzil, J. Torin, Chen, Ke, Kurgan, Lukasz, Tuszynski, Jack A.

Journal:

Cancer Informatics

Year:

2007

Language:

english

File:

PDF, 979 KB

english, 2007

6

Comparison of Supervised Classification Methods for Protein Profiling in Cancer Diagnosis

Dossat, Nadège, Mangé, Alain, Solassol, Jérôme, Jacot, William, Lhermitte, Ludovic, Maudelonde, Thierry, Daurès, Jean-Pierre, Molinari, Nicolas

Journal:

Cancer Informatics

Year:

2007

Language:

english

File:

PDF, 422 KB

english, 2007

7

Identifying Biomarkers from Mass Spectrometry Data with Ordinal Outcome

Kwon, Deukwoo, Tadesse, Mahlet G., Sha, Naijun, Pfeiffer, Ruth M., Vannucci, Marina

Journal:

Cancer Informatics

Year:

2007

Language:

english

File:

PDF, 383 KB

english, 2007

8

Development of Query Strategies to Identify a Histologic Lymphoma Subtype in a Large Linked Database System

Graiser, Michael, Moore, Susan G., Victor, Rochelle, Hilliard, Ashley, Hill, Leroy, Keehan, Michael S., Flowers, Christopher R.

Journal:

Cancer Informatics

Year:

2007

File:

PDF, 418 KB

2007

9

Statistical Issues and Analyses of in vivo and in vitro Genomic Data in order to Identify Clinically Relevant Profiles

Poisson, Laila M., Ghosh, Debashis

Journal:

Cancer Informatics

Year:

2007

File:

PDF, 2.02 MB

2007

10

Normalized, Segmented or Called aCGH Data?

Van Wieringen, Wessel N., Van De Wiel, Mark A., Ylstra, Bauke

Journal:

Cancer Informatics

Year:

2007

Language:

english

File:

PDF, 363 KB

english, 2007

11

Cross-platform Analysis of Cancer Biomarkers: A Bayesian Network Approach to Incorporating Mass Spectrometry and Microarray Data

Deng, Xutao, Geng, Huimin, Ali, Hesham H.

Journal:

Cancer Informatics

Year:

2007

Language:

english

File:

PDF, 917 KB

english, 2007

12

Overlay Tool © for aCGHViewer © : An Analysis Module Built for aCGHViewer © used to Perform Comparisons of Data Derived from Different Microarray Platforms

Lo, Ken C., Shankar, Ganesh, Turpaz, Yaron, Bailey, Dione, Rossi, Michael R., Burkhardt, Tania, Liang, Ping, Cowell, John K.

Journal:

Cancer Informatics

Year:

2007

Language:

english

File:

PDF, 657 KB

english, 2007

13

Identification and Characterization of Renal Cell Carcinoma Gene Markers

Dalgin, Gul S., Holloway, Dustin T., Liou, Louis S., Delisi, Charles

Journal:

Cancer Informatics

Year:

2007

Language:

english

File:

PDF, 2.11 MB

english, 2007

14

Statistical Redundancy Testing for Improved Gene Selection in Cancer Classification Using Microarray Data

Hu, Simin, Rao, J. Sunil

Journal:

Cancer Informatics

Year:

2007

Language:

english

File:

PDF, 456 KB

english, 2007

15

Combining Clinical and Genomic Covariates via Cov-TGDR

Ma, Shuangge, Huang, Jian

Journal:

Cancer Informatics

Year:

2007

Language:

english

File:

PDF, 480 KB

english, 2007

16

Systems Level Modeling of the Cell Cycle Using Budding Yeast

Ingalls, B.P., Duncker, B.P., Kim, D.R., McConkey, B.J.

Journal:

Cancer Informatics

Year:

2007

Language:

english

File:

PDF, 255 KB

english, 2007

17

Feature Selection for Predicting Tumor Metastases in Microarray Experiments using Paired Design

Tan, Qihua, Thomassen, Mads, Kruse, Torben A.

Journal:

Cancer Informatics

Year:

2007

Language:

english

File:

PDF, 296 KB

english, 2007

18

Common Peak Approach Using Mass Spectrometry Data Sets for Predicting the Effects of Anticancer Drugs on Breast Cancer

Ushijima, Masaru, Miyata, Satoshi, Eguchi, Shinto, Kawakita, Masanori, Yoshimoto, Masataka, Iwase, Takuji, Akiyama, Futoshi, Sakamoto, Goi, Nagasaki, Koichi, Miki, Yoshio, Noda, Tetsuo, Hoshikawa, Yut

Journal:

Cancer Informatics

Year:

2007

Language:

english

File:

PDF, 340 KB

english, 2007

19

Chiara Silvestrini

Edgerton, Mary E.

Journal:

Cancer Informatics

Year:

2007

Language:

english

File:

PDF, 80 KB

english, 2007

20

Comparison of Predicted Probabilities of Proportional Hazards Regression and Linear Discriminant Analysis Methods Using a Colorectal Cancer Molecular Biomarker Database

Meleth, Sreelatha, Chatla, Chakrapani, Katkoori, Venkat R., Anderson, Billie, Hardin, James M., Jhala, Nirag C., Bartolucci, Al, Grizzle, William E., Manne, Upender

Journal:

Cancer Informatics

Year:

2007

Language:

english

File:

PDF, 269 KB

english, 2007

21

Simultaneous EGFR and VEGF Alterations in Non-Small Cell Lung Carcinoma Based on Tissue Microarrays

Tsiambas, Evangelos, Stamatelopoulos, Athanasios, Karameris, Andreas, Panagiotou, Ioannis, Rigopoulos, Dimitrios, Chatzimichalis, Antonios, Bouros, Demosthenes, Patsouris, Efstratios

Journal:

Cancer Informatics

Year:

2007

Language:

english

File:

PDF, 701 KB

english, 2007

22

Chiara Silvestrini

Edgerton, Mary E.

Journal:

Cancer Informatics

Year:

2007

File:

PDF, 80 KB

2007

23

Comparison of Predicted Probabilities of Proportional Hazards Regression and Linear Discriminant Analysis Methods Using a Colorectal Cancer Molecular Biomarker Database

Meleth, Sreelatha, Chatla, Chakrapani, Katkoori, Venkat R., Anderson, Billie, Hardin, James M., Jhala, Nirag C., Bartolucci, Al, Grizzle, William E., Manne, Upender

Journal:

Cancer Informatics

Year:

2007

File:

PDF, 269 KB

2007

24

Simultaneous EGFR and VEGF Alterations in Non-Small Cell Lung Carcinoma Based on Tissue Microarrays

Tsiambas, Evangelos, Stamatelopoulos, Athanasios, Karameris, Andreas, Panagiotou, Ioannis, Rigopoulos, Dimitrios, Chatzimichalis, Antonios, Bouros, Demosthenes, Patsouris, Efstratios

Journal:

Cancer Informatics

Year:

2007

File:

PDF, 701 KB

2007