Volume 6

Cancer Informatics

Volume 6

1

Bayesian Estimation of Performance Measures of Cervical Cancer Screening Tests in the Presence of Covariates and Absence of a Gold Standard

Martinez, Edson Zangiacomi, Louzada-Neto, Francisco, Derchain, Sophie Françoise Mauricette, Achcar, Jorge Alberto, Gontijo, Renata Clementino, Sarian, Luis Otávio Zanatta, Syrjänen, Kari Juhani

Journal:

Cancer Informatics

Year:

2008

Language:

english

File:

PDF, 1.52 MB

english, 2008

2

Non-Negative Matrix Factorization for the Analysis of Complex Gene Expression Data: Identification of Clinically Relevant Tumor Subtypes

Frigyesi, Attila, Höglund, Mattias

Journal:

Cancer Informatics

Year:

2008

Language:

english

File:

PDF, 4.65 MB

english, 2008

3

Uncovering Biological Network Function via Graphlet Degree Signatures

Milenković, Tijana, Pržulj, Nataša

Journal:

Cancer Informatics

Year:

2008

Language:

english

File:

PDF, 1.16 MB

english, 2008

4

Classifying Variants of Undetermined Significance in BRCA2 with Protein Likelihood Ratios

Karchin, Rachel, Agarwal, Mukesh, Sali, Andrej, Couch, Fergus, Beattie, Mary S.

Journal:

Cancer Informatics

Year:

2008

Language:

english

File:

PDF, 1.40 MB

english, 2008

5

Effect of Quantitative Nuclear Image Features on Recurrence of Ductal Carcinoma In Situ (DCIS) of the Breast

Axelrod, David E., Miller, Naomi A., Lickley, H. Lavina, Qian, Jin, Christens-Barry, William A., Yuan, Yan, Fu, Yuejiao, Chapman, Judith-Anne W.

Journal:

Cancer Informatics

Year:

2008

Language:

english

File:

PDF, 979 KB

english, 2008

6

The Anti-tumour Agent, Cisplatin, and its Clinically Ineffective Isomer, Transplatin, Produce Unique Gene Expression Profiles in Human Cells

Galea, Anne M., Murray, Vincent

Journal:

Cancer Informatics

Year:

2008

File:

PDF, 668 KB

2008

7

An Analysis Pipeline for Genome-wide Association Studies

Stefanov, Stefan, Lautenberger, James, Gold, Bert

Journal:

Cancer Informatics

Year:

2008

File:

PDF, 297 KB

2008

8

Connections between ETV6-Modulated Genes: Identification of Shared Features

Boily, Gino, Beaulieu, Patrick, Healy, Jasmine, Sinnett, Daniel

Journal:

Cancer Informatics

Year:

2008

File:

PDF, 743 KB

2008

9

Comparison of a Label-Free Quantitative Proteomic Method Based on Peptide Ion Current Area to the Isotope Coded Affinity Tag Method

Ryu, Soyoung, Gallis, Byron, Goo, Young Ah, Shaffer, Scott A., Radulovic, Dragan, Goodlett, David R.

Journal:

Cancer Informatics

Year:

2008

Language:

english

File:

PDF, 865 KB

english, 2008

10

A Computational Model of Quantitative Chromatin Immunoprecipitation (ChIP) Analysis

Xie, Jingping, Crooke, Philip S., McKinney, Brett A., Soltman, Joel, Brandt, Stephen J.

Journal:

Cancer Informatics

Year:

2008

Language:

english

File:

PDF, 1.64 MB

english, 2008

11

Comparisons of Robustness and Sensitivity between Cancer and Normal Cells by Microarray Data

Chu, Liang-Hui, Chen, Bor-Sen

Journal:

Cancer Informatics

Year:

2008

Language:

english

File:

PDF, 1005 KB

english, 2008

12

DNA Copy Number Analysis in Gastrointestinal Stromal Tumors Using Gene Expression Microarrays

Antonescu, Cristina R., Wu, Kai, Xing, Guoliang Leon, Cao, Manqiu, Turpaz, Yaron, Leversha, Margaret A., Hubbell, Earl, Maki, Robert G., Miyada, C. Garrett, Pillai, Raji

Journal:

Cancer Informatics

Year:

2008

Language:

english

File:

PDF, 966 KB

english, 2008

13

Sample Preparation for in vitro Analysis of Iodine in Thyroid Tissue using X-ray Fluorescence

Hansson, Marie, Isaksson, Mats, Berg, Gertrud

Journal:

Cancer Informatics

Year:

2008

Language:

english

File:

PDF, 781 KB

english, 2008

14

BRB-ArrayTools Data Archive for Human Cancer Gene Expression: A Unique and Efficient Data Sharing Resource

Zhao, Yingdong, Simon, Richard

Journal:

Cancer Informatics

Year:

2008

Language:

english

File:

PDF, 1.24 MB

english, 2008

15

An Analysis of Risk Factors for Developing Hepatocellular Carcinoma in a Group of Hepatitis C Patients with Stage 3 Fibrosis following Interferon Therapy

Mahmood, Sabina, Togawa, Kazumi, Kawanaka, Miwa, Niiyama, Gouichi, Yamada, Gotaro

Journal:

Cancer Informatics

Year:

2008

Language:

english

File:

PDF, 304 KB

english, 2008

16

Grammatical Immune System Evolution for Reverse Engineering Nonlinear Dynamic Bayesian Models

McKinney, B.A., Tian, D.

Journal:

Cancer Informatics

Year:

2008

Language:

english

File:

PDF, 511 KB

english, 2008

17

An Application of a Service-oriented System to Support ArrayAnnotation in Custom Chip Design for Epigenomic Analysis

Han, Junghee, Potter, Dustin, Kurc, Tahsin, Singer, Greg, Yan, Pearlly S., Hao, Sun, Hastings, Shannon, Langella, Stephen, Oster, Scott, Davuluri, Ramana V., Huang, Tim H.-M., Saltz, Joel H.

Journal:

Cancer Informatics

Year:

2008

Language:

english

File:

PDF, 650 KB

english, 2008

18

Bayesian Mass Spectra Peak Alignment from Mass Charge Ratios

Liu, Junfeng, Yu, Weichuan, Wu, Baolin, Zhao, Hongyu

Journal:

Cancer Informatics

Year:

2008

Language:

english

File:

PDF, 2.46 MB

english, 2008

19

Chromosome 20q Amplification Regulates in Vitro Response to Kinesin-5 Inhibitor

Jackson, Aimee L., Mao, Mao, Kobayashi, Sumire, Ward, Teresa, Biery, Matthew, Dai, Hongyue, Bartz, Steven R., Linsley, Peter S.

Journal:

Cancer Informatics

Year:

2008

Language:

english

File:

PDF, 1.73 MB

english, 2008

20

An Application of a Service-oriented System to Support ArrayAnnotation in Custom Chip Design for Epigenomic Analysis

Han, Junghee, Potter, Dustin, Kurc, Tahsin, Singer, Greg, Yan, Pearlly S., Hao, Sun, Hastings, Shannon, Langella, Stephen, Oster, Scott, Davuluri, Ramana V., Huang, Tim H.-M., Saltz, Joel H.

Journal:

Cancer Informatics

Year:

2008

File:

PDF, 650 KB

2008

21

Bayesian Mass Spectra Peak Alignment from Mass Charge Ratios

Liu, Junfeng, Yu, Weichuan, Wu, Baolin, Zhao, Hongyu

Journal:

Cancer Informatics

Year:

2008

File:

PDF, 2.46 MB

2008

22

Chromosome 20q Amplification Regulates in Vitro Response to Kinesin-5 Inhibitor

Jackson, Aimee L., Mao, Mao, Kobayashi, Sumire, Ward, Teresa, Biery, Matthew, Dai, Hongyue, Bartz, Steven R., Linsley, Peter S.

Journal:

Cancer Informatics

Year:

2008

File:

PDF, 1.73 MB

2008

23

An Integrative Analysis of microRNA and mRNA Expressionâ-A Case Study

Journal:

Cancer Informatics

Year:

2008

Language:

english

File:

PDF, 671 KB

english, 2008