Volume 6

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SoftwareX
Volume 6

SoftwareX

Volume 6

1

pysimm: A python package for simulation of molecular systems

Fortunato, Michael E., Colina, Coray M.

Journal:

Year:

2017

Language:

english

File:

PDF, 1.07 MB

english, 2017

2

SULISO: The Bath suite of vibrational characterization and isotope effect calculation software

Williams, Ian H., Wilson, Philippe B.

Journal:

Year:

2017

Language:

english

File:

PDF, 1.57 MB

english, 2017

3

A browser-based tool for conversion between Fortran NAMELIST and XML/HTML

Journal:

Year:

2017

Language:

english

File:

PDF, 1.43 MB

english, 2017

4

PAPARA(ZZ)I: An open-source software interface for annotating photographs of the deep-sea

Marcon, Yann, Purser, Autun

Journal:

Year:

2017

Language:

english

File:

PDF, 4.09 MB

english, 2017

5

CodaNorm: A software package for the body-wave attenuation calculation by the coda-normalization method

Predein, Peter A., Dobrynina, Anna A., Tubanov, Tsyren A., German, Eugeny I.

Journal:

Year:

2017

Language:

english

File:

PDF, 1.55 MB

english, 2017

6

WheelerLab: An interactive program for sequence stratigraphic analysis of seismic sections, outcrops and well sections and the generation of chronostratigraphic sections and dynamic chronostratigraphic sections

Amosu, Adewale, Sun, Yuefeng

Journal:

Year:

2017

Language:

english

File:

PDF, 1.89 MB

english, 2017

7

The CSSIAR v.1.00 Software: A new tool based on SIAR to assess soil redistribution using Compound Specific Stable Isotopes

Sergio, de los Santos-Villalobos, Claudio, Bravo-Linares, dos Anjos Roberto, Meigikos, Renan, Cardoso, Max, Gibbs, Andrew, Swales, Lionel, Mabit, Gerd, Dercon

Journal:

Year:

2017

Language:

english

File:

PDF, 2.03 MB

english, 2017

8

galkin: A new compilation of Milky Way rotation curve data

Pato, Miguel, Iocco, Fabio

Journal:

Year:

2017

Language:

english

File:

PDF, 700 KB

english, 2017

9

proportion: A comprehensive R package for inference on single Binomial proportion and Bayesian computations

Subbiah, M., Rajeswaran, V.

Journal:

Year:

2017

Language:

english

File:

PDF, 1.36 MB

english, 2017

10

Proscene: A feature-rich framework for interactive environments

Charalambos, Jean Pierre

Journal:

Year:

2017

Language:

english

File:

PDF, 1.06 MB

english, 2017

11

Segy-change: The swiss army knife for the SEG-Y files

Stanghellini, Giuseppe, Carrara, Gabriela

Journal:

Year:

2017

Language:

english

File:

PDF, 611 KB

english, 2017

12

XaNSoNS: GPU-accelerated simulator of diffraction patterns of nanoparticles

Journal:

Year:

2017

Language:

english

File:

PDF, 1.51 MB

english, 2017

13

iamxt: Max-tree toolbox for image processing and analysis

Souza, Roberto, Rittner, Letícia, Machado, Rubens, Lotufo, Roberto

Journal:

Year:

2017

Language:

english

File:

PDF, 1.35 MB

english, 2017

14

MicroFract: An image based code for microstructural crack path prediction

Sundararaghavan, Veera, Srivastava, Siddhartha

Journal:

Year:

2017

Language:

english

File:

PDF, 1.01 MB

english, 2017

15

RCrawler: An R package for parallel web crawling and scraping

Khalil, Salim, Fakir, Mohamed

Journal:

Year:

2017

Language:

english

File:

PDF, 897 KB

english, 2017

16

Qudi: A modular python suite for experiment control and data processing

Binder, Jan M., Stark, Alexander, Tomek, Nikolas, Scheuer, Jochen, Frank, Florian, Jahnke, Kay D., Müller, Christoph, Schmitt, Simon, Metsch, Mathias H., Unden, Thomas, Gehring, Tobias, Huck, Alexande

Journal:

Year:

2017

Language:

english

File:

PDF, 942 KB

english, 2017

17

Discrete element modeling of deformable particles in YADE

Haustein, Martin, Gladkyy, Anton, Schwarze, Rüdiger

Journal:

Year:

2017

Language:

english

File:

PDF, 1006 KB

english, 2017

18

solveTruss v1.0: Static, global buckling and frequency analysis of 2D and 3D trusses with Mathematica

Ozbasaran, Hakan

Journal:

Year:

2017

Language:

english

File:

PDF, 755 KB

english, 2017

19

FLBEIA : A simulation model to conduct Bio-Economic evaluation of fisheries management strategies

Garcia, Dorleta, Sánchez, Sonia, Prellezo, Raúl, Urtizberea, Agurtzane, Andrés, Marga

Journal:

Year:

2017

Language:

english

File:

PDF, 1.86 MB

english, 2017

20

MGtoolkit: A python package for implementing metagraphs

Ranathunga, D., Nguyen, H., Roughan, M.

Journal:

Year:

2017

Language:

english

File:

PDF, 770 KB

english, 2017

21

The Openpipeflow Navier–Stokes solver

Willis, Ashley P.

Journal:

Year:

2017

Language:

english

File:

PDF, 773 KB

english, 2017

22

Mr.CAS —A minimalistic (pure) Ruby CAS for fast prototyping and code generation

Journal:

Year:

2017

Language:

english

File:

PDF, 573 KB

english, 2017

23

Update 1.5 to “Takin: An open-source software for experiment planning, visualisation, and data analysis”, (PII: S2352711016300152)

Journal:

Year:

2017

Language:

english

File:

PDF, 708 KB

english, 2017

24

MY SIRR: Minimalist agro-hYdrological model for Sustainable IRRigation management—Soil moisture and crop dynamics

Albano, Raffaele, Manfreda, Salvatore, Celano, Giuseppe

Journal:

Year:

2017

Language:

english

File:

PDF, 2.74 MB

english, 2017

25

CompSim: Cross sectional modeling of geometrical complex and inhomogeneous slender structures

Ashuri, Turaj, Zhang, Jie

Journal:

Year:

2017

Language:

english

File:

PDF, 1004 KB

english, 2017

26

Mammut: High-level management of system knobs and sensors

De Sensi, Daniele, Torquati, Massimo, Danelutto, Marco

Journal:

Year:

2017

Language:

english

File:

PDF, 690 KB

english, 2017

27

eRDF Analyser: An interactive GUI for electron reduced density function analysis

Shanmugam, Janaki, Borisenko, Konstantin B., Chou, Yu-Jen, Kirkland, Angus I.

Journal:

Year:

2017

Language:

english

File:

PDF, 6.28 MB

english, 2017

28

Particle-based and meshless methods with Aboria

Robinson, Martin, Bruna, Maria

Journal:

Year:

2017

Language:

english

File:

PDF, 919 KB

english, 2017

29

Rambrain - a library for virtually extending physical memory

Imgrund, M., Arth, A.

Journal:

Year:

2017

Language:

english

File:

PDF, 1.82 MB

english, 2017

30

ASAS: Computational code for Analysis and Simulation of Atomic Spectra

dos Santos, Jhonatha R., Barreta, Luiz F.N., Sbampato, Maria E., Destro, Marcelo G.

Journal:

Year:

2017

Language:

english

File:

PDF, 1.34 MB

english, 2017

31

UPStream: Automated hydraulic design of pressurized water distribution networks

Emmanouil, Stergios, Langousis, Andreas

Journal:

Year:

2017

Language:

english

File:

PDF, 794 KB

english, 2017

32

OSM-Classic : An optical imaging technique for accurately determining strain

Aldrich, Daniel R., Ayranci, Cagri, Nobes, David S.

Journal:

Year:

2017

Language:

english

File:

PDF, 1.75 MB

english, 2017

33

BabelFish—Tools for IEEE C37.118.2-compliant real-time synchrophasor data mediation

Almas, M.S., Vanfretti, L., Baudette, M.

Journal:

Year:

2017

Language:

english

File:

PDF, 3.33 MB

english, 2017

34

The Sound Design Toolkit

Baldan, Stefano, Delle Monache, Stefano, Rocchesso, Davide

Journal:

Year:

2017

Language:

english

File:

PDF, 1.30 MB

english, 2017

35

compuGUT: An in silico platform for simulating intestinal fermentation

Moorthy, Arun S., Eberl, Hermann J.

Journal:

Year:

2017

Language:

english

File:

PDF, 1.55 MB

english, 2017

36

The Co-regulation Data Harvester: Automating gene annotation starting from a transcriptome database

Tsypin, Lev M., Turkewitz, Aaron P.

Journal:

Year:

2017

Language:

english

File:

PDF, 1.43 MB

english, 2017

37

Little AI: Playing a constructivist robot

Georgeon, Olivier L.

Journal:

Year:

2017

Language:

english

File:

PDF, 983 KB

english, 2017

38

A NetCDF version of the two-dimensional energy balance model based on the full multigrid algorithm

Zhuang, Kelin, North, Gerald R., Stevens, Mark J.

Journal:

Year:

2017

Language:

english

File:

PDF, 1.56 MB

english, 2017

39

featsel: A framework for benchmarking of feature selection algorithms and cost functions

Reis, Marcelo S., Estrela, Gustavo, Ferreira, Carlos Eduardo, Barrera, Junior

Journal:

Year:

2017

Language:

english

File:

PDF, 648 KB

english, 2017

40

Hermes: Seamless delivery of containerized bioinformatics workflows in hybrid cloud (HTC) environments

Kintsakis, Athanassios M., Psomopoulos, Fotis E., Symeonidis, Andreas L., Mitkas, Pericles A.

Journal:

Year:

2017

Language:

english

File:

PDF, 2.29 MB

english, 2017

41

Optimel: Software for selecting the optimal method

Popova, Olga, Popov, Boris, Romanov, Dmitry, Evseeva, Marina

Journal:

Year:

2017

Language:

english

File:

PDF, 2.59 MB

english, 2017

42

ConfocalGN: A minimalistic confocal image generator

Dmitrieff, Serge, Nédélec, François

Journal:

Year:

2017

Language:

english

File:

PDF, 818 KB

english, 2017

43

HYDROSCAPE: A new versatile software program for evaluating contaminant transport in groundwater

Funk, Sean P., Hnatyshin, Danny, Alessi, Daniel S.

Journal:

Year:

2017

Language:

english

File:

PDF, 1.31 MB

english, 2017

44

JDFTx: Software for joint density-functional theory

Sundararaman, Ravishankar, Letchworth-Weaver, Kendra, Schwarz, Kathleen A., Gunceler, Deniz, Ozhabes, Yalcin, Arias, T.A.

Journal:

Year:

2017

Language:

english

File:

PDF, 830 KB

english, 2017

45

TomoWarp2: A local digital volume correlation code

Tudisco, Erika, Andò, Edward, Cailletaud, Rémi, Hall, Stephen A.

Journal:

Year:

2017

Language:

english

File:

PDF, 832 KB

english, 2017

46

Software for objective comparison of vocal acoustic features over weeks of audio recording: KLFromRecordingDays

Soderstrom, Ken, Alalawi, Ali

Journal:

Year:

2017

Language:

english

File:

PDF, 2.19 MB

english, 2017

47

TopoZeko: A MATLAB function for 3-D and 4-D topographical visualization in geosciences

Zekollari, Harry

Journal:

Year:

2017

Language:

english

File:

PDF, 2.57 MB

english, 2017

48

Editorial Board

Journal:

Year:

2017

File:

PDF, 486 KB

2017

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