Volume 3; Issue suppl_1

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Virus Evolution
Volume 3; Issue suppl_1

Virus Evolution

Volume 3; Issue suppl_1

1

A28 Frequent co-infection among human group a rotaviruses in Thailand

Rabaa, M.A., Dung, T.T.N., Duy, P.T., Bodhidatta, L., Swierczewski, B., Sessions, O.M., Mason, C.J., Baker, S.

Journal:

Virus Evolution

Year:

2017

Language:

english

File:

PDF, 35 KB

english, 2017

2

A8 The epidemiology and evolution of influenza A/H1N1 and A/H3N2 virus from 2010 to 2015, in Ho Chi Minh City, Vietnam

Vy, Nguyen Ha Thao, Phuong, Huynh Thi, Vinh, Dao Nguyen, Boni, Maciej F

Journal:

Virus Evolution

Year:

2017

Language:

english

File:

PDF, 29 KB

english, 2017

3

A30 Recombination & evolution in two viral families: effective steps or a random walk?

Bingham, R., Leonov, G., Patel, N., Weiss, E., White, S., Dykeman, E., Stockley, P., Twarock, R.

Journal:

Virus Evolution

Year:

2017

Language:

english

File:

PDF, 47 KB

english, 2017

4

A41 Diversity and evolution of avian influenza (AI) viruses in poultry and wild birds

Bergervoet, S.A., Heutink, R., Pritz-Verschuren, S.B.E., Poen, M.J., Bouwstra, R.J., Fouchier, R.A.M., Beerens, N.

Journal:

Virus Evolution

Year:

2017

Language:

english

File:

PDF, 32 KB

english, 2017

5

A49 Molecular evolutionary dynamics of respiratory syncytial virus group A in recurrent epidemics in coastal Kenya

Otieno, James R., Agoti, Charles N., Gitahi, Caroline W., Bett, Ann, Ngama, Mwanajuma, Medley, Graham F., Cane, Patricia A., Nokes, D. James

Journal:

Virus Evolution

Year:

2017

Language:

english

File:

PDF, 48 KB

english, 2017

6

A10 The evolution and molecular epidemiology of epidemic GII.17 noroviruses

Lu, Jing, Fang, Lin, Zheng, Huanying, Lao, Jiaqian, Yang, Feng, Sun, Limei, Xiao, Jianpeng, Lin, Jinyan, Song, Tie, Raghwani, Jayna, Ke, Changwen, Faria, Nuno R., Bowden, Thomas A., Pybus, Oliver G.,

Journal:

Virus Evolution

Year:

2017

Language:

english

File:

PDF, 35 KB

english, 2017

7

A9 Deep sequencing analysis to investigate the importance of within host genetic diversity and evolution of influenza A viruses for the development of resistance against neuraminidase inhibitors

Roosenhoff, R., van der Linden, A., Schutten, M., Fouchier, R.A.M.

Journal:

Virus Evolution

Year:

2017

Language:

english

File:

PDF, 35 KB

english, 2017

8

A37 HIV drug resistance monitoring in children receiving first line antiretroviral therapy at two pediatric hospitals in Ho Chi Minh City

Luong, Anh Q., Tran, Ton, Hoang, Khanh Thu H., Do, Ngoc Thao T., Vu, Thinh X., Truong, Khanh H., Du, Quy T., Le, Kim Thoa P., Do, Viet C., Vu, An T., Le, Thanh Thuy T., Nguyen, Kim Chi T., Nguyen, Bin

Journal:

Virus Evolution

Year:

2017

Language:

english

File:

PDF, 37 KB

english, 2017

9

A15 Rapid radiation of treponema pallidum pertenue in wild non-human primates

Düx, A., Schuenemann, V.J., Gogarten, J.F., De Nys, H.M., Nieselt, K., Mayhew, M.A., Leendertz, F.H., Calvignac-Spencer, S., Krause, J.

Journal:

Virus Evolution

Year:

2017

Language:

english

File:

PDF, 38 KB

english, 2017

10

A27 Using whole genome sequence data and minority variant profiles to elucidate transmission patterns during RSV household outbreaks

Githinji, George, Agoti, Charles, Munywoki, Patrick, Bett, Anne, Kellam, Paul, cotton, Matt, Nokes, D. James

Journal:

Virus Evolution

Year:

2017

File:

PDF, 45 KB

2017

11

A25 Phylogenetic analysis of the nucleocapsid and RNA-dependent RNA polymerase fragments of the first imported case of middle east respiratory syndrome coronavirus (MERS-CoV) infection in the Philippines from Saudi Arabia, February 2015

Medado, I.A.P., Orbina, J.R.C., Yabut, N.T.M., Dancel, L.L.M., Tan, T.C., Igoy, M.A.U., Mojica, A.M.R., Lirio, I.C., Ablola, A.C., Mateo, B.C., Biol, M.A.J., Nicolasora, A.D., Morito, H.L.E., Cruz, K.

Journal:

Virus Evolution

Year:

2017

Language:

english

File:

PDF, 35 KB

english, 2017

12

A51 Dengue virus multi-strain models as hypotheses for serotype interaction

Souto-Maior, C., Rasmussen, David A., De Freitas, Maciel, Gomes, M.G.M.

Journal:

Virus Evolution

Year:

2017

Language:

english

File:

PDF, 34 KB

english, 2017

13

A22 Increase in the numbers of HIV-1 non-B subtypes and potential recombinant forms circulating among Slovenian MSM in recent years

Lunar, M.M., Mlakar, J., Poljak, M.

Journal:

Virus Evolution

Year:

2017

Language:

english

File:

PDF, 48 KB

english, 2017

14

A33 The cervico-vaginale microbiota in chlamydia trachomtais notified women: a case–control study at the sexually transmitted infection outpatient clinic in Amsterdam

van der Veer, Charlotte, Bruisten, S.M., van der Helm, J.J., de Vries, H.J.C., van Houdt, R.

Journal:

Virus Evolution

Year:

2017

Language:

english

File:

PDF, 37 KB

english, 2017

15

A36 Prevalence of HIV-1 subtypes in Slovenia with an emphasis on molecular and phylogenetic investigation of subtype A

Mlakar, J., Lunar, Maja M., Abecasis, A.B., Vandamme, A.-M., Tomažič, J., Vovko, T.D., Pečavar, B., Volčanšek, G., Poljak, M.

Journal:

Virus Evolution

Year:

2017

Language:

english

File:

PDF, 49 KB

english, 2017

16

A45 Family clusters of avian influenza A H7N9 infection in Guangdong Province, China

Yi, Lina, Guan, Dawei, Kang, Min, Wu, Jie, Zeng, Xianqiao, Lu, Jing, Rutherford, Shannon, Zou, Lirong, Liang, Lijun, Ni, Hanzhong, Zhang, Xin, Zhong, Haojie, He, Jianfeng, Lin, Jinyan, Ke, Changwen

Journal:

Virus Evolution

Year:

2017

Language:

english

File:

PDF, 35 KB

english, 2017

17

A2 HIV transmission networks among injection drug users in Pakistan

Cholette, Francois, Ho, John, McCoubrey, Hillary, Kadivar, Kiana, Thompson, Laura, Blanchard, James, Emmanuel, Faran, Brooks, James, Kim, John, Sandstrom, Paul

Journal:

Virus Evolution

Year:

2017

Language:

english

File:

PDF, 50 KB

english, 2017

18

A42 Evolution and spatial dissemination of the highly pathogenic Asian H5 avian influenza viruses

Cheung, Y.M., Lam, T.T.Y., Zhu, H., Guan, Y.

Journal:

Virus Evolution

Year:

2017

Language:

english

File:

PDF, 32 KB

english, 2017

19

A44 Determination of highly conserved sites by deep sequencing in avian influenza A virus H5N1

Wang, Liang, Jiao, Bairong, Lu, Jia, Ma, Jinmin, Xie, Jiazheng, Jin, Tiao, Gao, Shan, Wang, Hui, Liao, Ming

Journal:

Virus Evolution

Year:

2017

Language:

english

File:

PDF, 35 KB

english, 2017

20

A43 Modeling the ecology and evolution of H13 and H16 avian influenza A subtypes in black-headed gulls to understand influenza disease dynamics

Poen, M.J., Verhagen, J.H., Majoor, F.A., Lewis, N.S., Kuiken, T., De Jong, M.C.M., Fouchier, R.A.M.

Journal:

Virus Evolution

Year:

2017

Language:

english

File:

PDF, 35 KB

english, 2017

21

A19 Genetic markers for protease inhibitor drug resistance in regions outside of the protease gene

Giandhari, J., Gordon, M., van Vuuren, C., Moodley, P., de Oliveira, T.

Journal:

Virus Evolution

Year:

2017

Language:

english

File:

PDF, 38 KB

english, 2017

22

A20 The search for replication-competent HIV during effective therapy

Hiener, B., Horsburgh, B., Lee, E., Palmer, S.

Journal:

Virus Evolution

Year:

2017

Language:

english

File:

PDF, 38 KB

english, 2017

23

A17 Molecular characteristics of hepatitis B virus (HBV) isolated from chronic hepatitis B patients in South Vietnam

Trang, Nguyen Hoa, That, Bui Thi Ton, Thanh, Tran Thi Thanh, Chau, Le Ngoc, Thanh, Tran Tan, Ngoc, Nghiem My, Hung, Nguyen Manh, Chau, Nguyen Van Vinh, Rahman, Motiur

Journal:

Virus Evolution

Year:

2017

Language:

english

File:

PDF, 50 KB

english, 2017

24

A34 Automated profiling of the human virome from raw metagenomic data

Moosa, Yumna, Vilsker, Michael, Vanden Eyden, Ewout, Fonseca, Vagner, Nooij, Sam, Deforche, Koen, de Oliveira, Tulio

Journal:

Virus Evolution

Year:

2017

Language:

english

File:

PDF, 49 KB

english, 2017

25

A21 HIV-1 sub-subtype F1 outbreak among MSM in Belgium

Vinken, L., Fransen, K., Pineda-Peña, A.C., Alexiev, I., Balotta, C., Debaisieux, L., Devaux, C., García Ribas, S., Gomes, P., Incardona, F., Kaiser, R, Ruelle, J., Sayan, M., Paraschiv, S., Paredes,

Journal:

Virus Evolution

Year:

2017

Language:

english

File:

PDF, 38 KB

english, 2017

26

A38 Diversity analyses of HIV-1 envelope glycoproteins in HIV-infected individuals with and without broadly neutralizing antibodies

Mabvakure, B., Scheepers, C., Nonyane, M., Lambson, B., Madzorera, S., Kitchin, D., Bhiman, J., Wibmer, K., Abdool Karim, S., Williamson, C., Morris, L., Moore, P.L.

Journal:

Virus Evolution

Year:

2017

Language:

english

File:

PDF, 37 KB

english, 2017

27

A27 Using whole genome sequence data and minority variant profiles to elucidate transmission patterns during RSV household outbreaks

Githinji, George, Agoti, Charles, Munywoki, Patrick, Bett, Anne, Kellam, Paul, cotton, Matt, Nokes, D. James

Journal:

Virus Evolution

Year:

2017

Language:

english

File:

PDF, 45 KB

english, 2017

28

A50 The emergence of G8P[8] rotavirus group A across Vietnam

Duy, Pham Thanh, Dung, Tran Thi Ngoc, Sessions, October M., Rabaa, Maia A., Baker, Stephen

Journal:

Virus Evolution

Year:

2017

Language:

english

File:

PDF, 34 KB

english, 2017

29

A13 HIV drug resistance over a decade of antiretroviral therapy scale-up for HIV/AIDS patients in Vietnam

Nguyen, L.A., Do, D.H., Nguyen, L.T., Do, N.T., Nguyen, H.H., Nguyen, V.T., Vu, D.Q., Nguyen, H.T., Kato, M., Jordan, M.R., Bui, D.D.

Journal:

Virus Evolution

Year:

2017

Language:

english

File:

PDF, 37 KB

english, 2017

30

A39 Human exome sequencing to evaluate the impact of rare coding variation on HIV-1 control

McLaren, P.J., Shea, P.R., Bartha, I., Fellay, J.

Journal:

Virus Evolution

Year:

2017

Language:

english

File:

PDF, 49 KB

english, 2017

31

A4 The transmission dynamics over ten years of human immunodeficiency virus type 1 in Vietnam

Thao, V.P., Quang, V.M., Vinh Chau, N.V., Day, J., Thwaites, G., Le, T.

Journal:

Virus Evolution

Year:

2017

Language:

english

File:

PDF, 67 KB

english, 2017

32

A23 Identification of HIV drug resistance mutation patterns using illumina MiSeq next generation sequencing in patients failing second-line boosted protease inhibitor therapy in Nigeria

James, Onyemata E., Johanna, Ledwaba, Rawlings, Datir, Babajehson, M., Ashrad, Ismail, Anne, Derache, Abimiku, Alash’le, Dakum, Patrick, Gillian, Hunt, Ndembi, Nicaise

Journal:

Virus Evolution

Year:

2017

Language:

english

File:

PDF, 65 KB

english, 2017

33

A14 Comprehensive characterisation and evolutionary analysis of endogenous retroviruses in the mouse genome

Dennis, Tristan P.W., Zhu, Henan, Wilson, Sam J., Gifford, Robert J.

Journal:

Virus Evolution

Year:

2017

Language:

english

File:

PDF, 79 KB

english, 2017

34

A46 MERS-CoV in Arabian camels in Africa and Central Asia

Chu, Daniel K.W., Chan, Samuel M.S., Perera, Ranawaka A.P.M., Miguel, Eve, Roger, F., Chevalier, V., Poon, Leo L.M., Peiris, Malik

Journal:

Virus Evolution

Year:

2017

Language:

english

File:

PDF, 79 KB

english, 2017

35

A5 Peripheral blood cells contribute to HIV-1 viremia induced by romidepsin

Winckelmann, A., Barton, K., Hiener, B., Shao, W., Østergaard, L., Rasmussen, T., Søgaard, O., Tolstrup, M., Palmer, S.

Journal:

Virus Evolution

Year:

2017

Language:

english

File:

PDF, 66 KB

english, 2017

36

A26 Transmission patterns and evolution of RSV in a community outbreak identified by genomic analysis

Agoti, Charles N., Munywoki, Patrick K., Phan, My V. T., Otieno, James R., Kamau, Everlyn, Bett, Anne, Kombe, Ivy, Githinji, George, Medley, Graham F., Cane, Patricia A., Kellam, Paul, Cotton, Matthew

Journal:

Virus Evolution

Year:

2017

Language:

english

File:

PDF, 39 KB

english, 2017

37

A1 Signature pattern and phylogenetic analysis of full-length env genes in 20 hemophiliacs infected with Korean subclade of HIV-1 subtype B

Cho, Young-Keol, Kim, Jung-Eun, Foley, Brian T.

Journal:

Virus Evolution

Year:

2017

Language:

english

File:

PDF, 80 KB

english, 2017

38

A35 Viral evolution and innate immune responses during acute HIV-1 infection and their association with disease pathogenesis

Hassan, A.S., Hare, J., Kamini, G., Yindom, L.M., Kamali, A., Karita, E., Kilemba, W., Price, M.A., Borrow, P., Bjorkman, P., Albert, J., Kaleebu, P., Allan, S., Fast, P., Hunter, E., Gilmour, J., Ndu

Journal:

Virus Evolution

Year:

2017

Language:

english

File:

PDF, 68 KB

english, 2017

39

A3 Genetic analysis and natural polymorphisms in HIV-1 gp41 isolates from Maputo, Mozambique

Ismael, Nália, Bila, Dulce, Mariani, Diana, Vubil, Adolfo, Mabunda, Nedio, Abreu, Celina, Jani, Ilesh, Tanuri, Amilcar

Journal:

Virus Evolution

Year:

2017

Language:

english

File:

PDF, 90 KB

english, 2017

40

A16 A distributed pan-viral typing framework

Vilsker, Michael, Deforche, Koen

Journal:

Virus Evolution

Year:

2017

Language:

english

File:

PDF, 68 KB

english, 2017

41

A32 Search for viral integration insertion sites into the human genome—strategy matters

Zorec, T.M, Hošnjak, L., Kocjan, B., Gale, N., Zidar, N., Strojan, P., Poljak, M.

Journal:

Virus Evolution

Year:

2017

Language:

english

File:

PDF, 66 KB

english, 2017

42

A11 Phylogenetic and phylogeographic analysis of viral surveillance data to inform rabies control programmes in Cambodia

Morters, M.K, Wood, J.L.N.

Journal:

Virus Evolution

Year:

2017

Language:

english

File:

PDF, 65 KB

english, 2017

43

A18 Random amplification with next-generation sequencing to cover HIV and HCV full-length genomes

Cuypers, L., Conceição-Neto, N., Dierickx, T., Schrooten, Y., Vrancken, B., Van Wijngaerden, E., Nevens, F., Vandamme, A.-M., Matthijnssens, J., Van Laethem, K.

Journal:

Virus Evolution

Year:

2017

Language:

english

File:

PDF, 68 KB

english, 2017

44

A52 Development and evaluation of a viral-specific random PCR and next-generation sequencing based assay for detection and sequencing of hand, foot, and mouth disease pathogens

Anh, Nguyen To, Thanh, Tran Tan, Van, Hoang Minh Tu, Ngoc, Nghiem My, Nhu, Le Nguyen Truc, Thanh, Le Thi My, Qui, Phan Tu, Khanh, Truong Huu, Nhan, Le Nguyen Thanh, Viet, Ho Lu, Viet, Do Chau, Tuan, H

Journal:

Virus Evolution

Year:

2017

Language:

english

File:

PDF, 66 KB

english, 2017

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