Volume 47

Computational Biology and Chemistry

Volume 47

1

A model for the proteolytic regulation of LpxC in the lipopolysaccharide pathway of Escherichia coli

Emiola, Akintunde, Falcarin, Paolo, Tocher, Joanne, George, John

Journal:

Computational Biology and Chemistry

Year:

2013

Language:

english

File:

PDF, 1.19 MB

english, 2013

2

Modeling, docking and dynamics simulations of a non-specific lipid transfer protein from Peganum harmala L.

Shi, Zheng, Wang, Zi-jie, Xu, Huai-long, Tian, Yang, Li, Xin, Bao, Jin-ku, Sun, Su-rong, Yue, Bi-song

Journal:

Computational Biology and Chemistry

Year:

2013

Language:

english

File:

PDF, 4.86 MB

english, 2013

3

Mutually exclusive binding of APPLPH to BAR domain and Reptin regulates β-catenin dependent transcriptional events

Rashid, Sajid, Parveen, Zahida, Ferdous, Saba, Bibi, Nousheen

Journal:

Computational Biology and Chemistry

Year:

2013

Language:

english

File:

PDF, 2.21 MB

english, 2013

4

Computational intelligence techniques in bioinformatics

Hassanien, Aboul Ella, Al-Shammari, Eiman Tamah, Ghali, Neveen I.

Journal:

Computational Biology and Chemistry

Year:

2013

Language:

english

File:

PDF, 1015 KB

english, 2013

5

Understanding the lid movements of LolA in Escherichia coli using molecular dynamics simulation and in silico point mutation

Murahari, Priyadarshini, Anishetty, Sharmila, Pennathur, Gautam

Journal:

Computational Biology and Chemistry

Year:

2013

Language:

english

File:

PDF, 575 KB

english, 2013

6

Computer modeling of the dynamic properties of the cAMP-dependent protein kinase catalytic subunit

Izvolski, Andrei, Järv, Jaak, Kuznetsov, Aleksei

Journal:

Computational Biology and Chemistry

Year:

2013

Language:

english

File:

PDF, 1.51 MB

english, 2013

7

Computational structure analysis of biomacromolecule complexes by interface geometry

Mahdavi, Sedigheh, Salehzadeh-Yazdi, Ali, Mohades, Ali, Masoudi-Nejad, Ali

Journal:

Computational Biology and Chemistry

Year:

2013

Language:

english

File:

PDF, 1.68 MB

english, 2013

8

In silico characterization and evolutionary analyses of CCAAT binding proteins in the lycophyte plant Selaginella moellendorffii genome: A growing comparative genomics resource

Saha, Jayita, Gupta, Kamala, Gupta, Bhaskar

Journal:

Computational Biology and Chemistry

Year:

2013

Language:

english

File:

PDF, 3.09 MB

english, 2013

9

Unintended consequences? Water molecules at biological and crystallographic protein–protein interfaces

Ahmed, Mostafa H., Habtemariam, Mesay, Safo, Martin K., Scarsdale, J. Neel, Spyrakis, Francesca, Cozzini, Pietro, Mozzarelli, Andrea, Kellogg, Glen E.

Journal:

Computational Biology and Chemistry

Year:

2013

Language:

english

File:

PDF, 720 KB

english, 2013

10

Cation−π interactions in high resolution protein−RNA complex crystal structures

Borozan, Sunčica Z., Dimitrijević, Blagoje P., Stojanović, Srđan Đ.

Journal:

Computational Biology and Chemistry

Year:

2013

Language:

english

File:

PDF, 1023 KB

english, 2013

11

A large scale virtual screen of DprE1

Wilsey, Claire, Gurka, Jessica, Toth, David, Franco, Jimmy

Journal:

Computational Biology and Chemistry

Year:

2013

Language:

english

File:

PDF, 1.44 MB

english, 2013

12

A comparative computational investigation on the proton and hydride transfer mechanisms of monoamine oxidase using model molecules

Atalay, Vildan Enisoğlu, Erdem, Safiye Sağ

Journal:

Computational Biology and Chemistry

Year:

2013

Language:

english

File:

PDF, 365 KB

english, 2013

13

In vitro cytotoxicity assessment based on KC50 with real-time cell analyzer (RTCA) assay

Pan, Tianhong, Khare, Swanand, Ackah, Fred, Huang, Biao, Zhang, Weiping, Gabos, Stephan, Jin, Can, Stampfl, Melinda

Journal:

Computational Biology and Chemistry

Year:

2013

Language:

english

File:

PDF, 1.04 MB

english, 2013

14

Identification of putative and potential cross-reactive chickpea (Cicer arietinum) allergens through an in silico approach

Kulkarni, Anuja, Ananthanarayan, Laxmi, Raman, Karthik

Journal:

Computational Biology and Chemistry

Year:

2013

Language:

english

File:

PDF, 1.12 MB

english, 2013

15

Using gene expression programming to infer gene regulatory networks from time-series data

Zhang, Yongqing, Pu, Yifei, Zhang, Haisen, Su, Yabo, Zhang, Lifang, Zhou, Jiliu

Journal:

Computational Biology and Chemistry

Year:

2013

Language:

english

File:

PDF, 2.05 MB

english, 2013

16

Halogen bonding in complexes of proteins and non-natural amino acids

Borozan, Sunčica Z., Stojanović, Srđan Đ.

Journal:

Computational Biology and Chemistry

Year:

2013

Language:

english

File:

PDF, 1.58 MB

english, 2013

17

An efficient nonlinear finite-difference approach in the computational modeling of the dynamics of a nonlinear diffusion-reaction equation in microbial ecology

Macías-Díaz, J.E., Macías, Siegfried, Medina-Ramírez, I.E.

Journal:

Computational Biology and Chemistry

Year:

2013

Language:

english

File:

PDF, 2.89 MB

english, 2013

18

Gene expression patterns combined with bioinformatics analysis identify genes associated with cholangiocarcinoma

Li, Chen, Shen, Weixing, Shen, Sheng, Ai, Zhilong

Journal:

Computational Biology and Chemistry

Year:

2013

Language:

english

File:

PDF, 1.06 MB

english, 2013

19

Bioinformatics analysis of a non-specific nuclease from Yersinia enterocolitica subsp. palearctica

Li, Zhen-Hua, Tang, Zhen-Xing, Fang, Xiu-Juan, Zhang, Zhi-Liang, Shi, Lu-E.

Journal:

Computational Biology and Chemistry

Year:

2013

Language:

english

File:

PDF, 3.44 MB

english, 2013

20

Heuristic-based tabu search algorithm for folding two-dimensional AB off-lattice model proteins

Liu, Jingfa, Sun, Yuanyuan, Li, Gang, Song, Beibei, Huang, Weibo

Journal:

Computational Biology and Chemistry

Year:

2013

Language:

english

File:

PDF, 724 KB

english, 2013

21

Prediction of protein modification sites of gamma-carboxylation using position specific scoring matrices based evolutionary information

Gao, Jianzhao, Zhang, Ning, Ruan, Jishou

Journal:

Computational Biology and Chemistry

Year:

2013

Language:

english

File:

PDF, 1.42 MB

english, 2013

22

Genomic studies on nitrogen metabolism in Halomonas boliviensis: Metabolic pathway, biochemistry and evolution

Balderrama-Subieta, Andrea, Quillaguamán, Jorge

Journal:

Computational Biology and Chemistry

Year:

2013

Language:

english

File:

PDF, 4.44 MB

english, 2013

23

Editorial

Journal:

Computational Biology and Chemistry

Year:

2013

Language:

english

File:

PDF, 135 KB

english, 2013

24

PPM-Dom: A novel method for domain position prediction

Sun, Jing, Jing, Runyu, Wang, Yuelong, Zhu, Tuanfei, Li, Menglong, Li, Yizhou

Journal:

Computational Biology and Chemistry

Year:

2013

Language:

english

File:

PDF, 2.10 MB

english, 2013

25

Computational investigations of folded self-avoiding walks related to protein folding

Bahi, Jacques M., Guyeux, Christophe, Mazouzi, Kamel, Philippe, Laurent

Journal:

Computational Biology and Chemistry

Year:

2013

Language:

english

File:

PDF, 2.13 MB

english, 2013

26

Novel features for identifying A-minors in three-dimensional RNA molecules

Sheth, Palak, Cervantes-Cervantes, Miguel, Nagula, Akhila, Laing, Christian, Wang, Jason T.L.

Journal:

Computational Biology and Chemistry

Year:

2013

Language:

english

File:

PDF, 931 KB

english, 2013

27

A systems chemical biology study of malate synthase and isocitrate lyase inhibition in Mycobacterium tuberculosis during active and NRP growth

May, Elebeoba E., Leitão, Andrei, Tropsha, Alexander, Oprea, Tudor I.

Journal:

Computational Biology and Chemistry

Year:

2013

Language:

english

File:

PDF, 5.08 MB

english, 2013

28

Title page

Journal:

Computational Biology and Chemistry

Year:

2013

File:

PDF, 131 KB

2013

29

Editorial Board

Journal:

Computational Biology and Chemistry

Year:

2013

Language:

english

File:

PDF, 124 KB

english, 2013

30

Probabilistic model based error correction in a set of various mutant sequences analyzed by next-generation sequencing

Aita, Takuyo, Ichihashi, Norikazu, Yomo, Tetsuya

Journal:

Computational Biology and Chemistry

Year:

2013

Language:

english

File:

PDF, 850 KB

english, 2013

31

H-bond refinement for electron transfer membrane-bound protein–protein complexes: Cytochrome c oxidase and cytochrome c552

Masone, Diego, Aloia, Facundo Ciocco, Del Pópolo, Mario G.

Journal:

Computational Biology and Chemistry

Year:

2013

Language:

english

File:

PDF, 4.64 MB

english, 2013

32

Mapping the intramolecular signal propagation pathways in protein using Bayesian change point analysis of atomic motions

Iakhiaev, Mikhail A., Iakhiaev, Alexei V.

Journal:

Computational Biology and Chemistry

Year:

2013

Language:

english

File:

PDF, 1.96 MB

english, 2013

33

Analysis of sequence repeats of proteins in the PDB

Mary Rajathei, David, Selvaraj, Samuel

Journal:

Computational Biology and Chemistry

Year:

2013

Language:

english

File:

PDF, 1.89 MB

english, 2013