Computational Statistics & Data Analysis

1

The beta-binomial distribution for estimating the number of false rejections in microarray gene expression studies

Daniel L. Hunt, Cheng Cheng, Stanley Pounds

Journal:

Year:

2009

Language:

english

File:

PDF, 931 KB

english, 2009

2

Deviance information criterion (DIC) in Bayesian multiple QTL mapping

Daniel Shriner, Nengjun Yi

Journal:

Computational Statistics & Data Analysis

Year:

2009

Language:

english

File:

PDF, 496 KB

english, 2009

3

Estimation of graphical models whose conditional independence graphs are interval graphs and its application to modelling linkage disequilibrium

Alun Thomas

Journal:

Computational Statistics & Data Analysis

Year:

2009

Language:

english

File:

PDF, 1.06 MB

english, 2009

4

Optimal designs to select individuals for genotyping conditional on observed binary or survival outcomes and non-genetic covariates

Juha Karvanen, Sangita Kulathinal, Dario Gasbarra

Journal:

Computational Statistics & Data Analysis

Year:

2009

Language:

english

File:

PDF, 722 KB

english, 2009

5

Excess false positive rate caused by population stratification and disease rate heterogeneity in case–control association studies

Zhaohai Li, Hong Zhang, Gang Zheng, Joseph L. Gastwirth, Mitchell H. Gail

Journal:

Computational Statistics & Data Analysis

Year:

2009

Language:

english

File:

PDF, 702 KB

english, 2009

6

Combining quantitative trait loci analyses and microarray data: An empirical likelihood approach

Dong Wang, Song Xi Chen

Journal:

Computational Statistics & Data Analysis

Year:

2009

Language:

english

File:

PDF, 582 KB

english, 2009

7

The use of plasmodes as a supplement to simulations: A simple example evaluating individual admixture estimation methodologies

Laura K. Vaughan, Jasmin Divers, Miguel A. Padilla, David T. Redden, Hemant K. Tiwari, Daniel Pomp, David B. Allison

Journal:

Computational Statistics & Data Analysis

Year:

2009

Language:

english

File:

PDF, 1.48 MB

english, 2009

8

Transmission Disequilibrium Test (TDT) for a pair of linked marker loci

P. Narain

Journal:

Computational Statistics & Data Analysis

Year:

2009

Language:

english

File:

PDF, 685 KB

english, 2009

9

Distribution modeling and simulation of gene expression data

Rudolph S. Parrish, Horace J. Spencer III, Ping Xu

Journal:

Computational Statistics & Data Analysis

Year:

2009

Language:

english

File:

PDF, 876 KB

english, 2009

10

Optimizing design of two-stage experiments for transcriptional profiling

Juan P. Steibel, Guilherme J.M. Rosa, Robert J. Tempelman

Journal:

Computational Statistics & Data Analysis

Year:

2009

Language:

english

File:

PDF, 938 KB

english, 2009

11

Simple Bayesian binary framework for discovering significant genes and classifying cancer diagnosis

Tae Young Yang

Journal:

Computational Statistics & Data Analysis

Year:

2009

Language:

english

File:

PDF, 7.87 MB

english, 2009

12

Balancing type one and two errors in multiple testing for differential expression of genes

Alexander Gordon, Linlin Chen, Galina Glazko, Andrei Yakovlev

Journal:

Computational Statistics & Data Analysis

Year:

2009

Language:

english

File:

PDF, 588 KB

english, 2009

13

On the glog-normal distribution and its application to the gene expression problem

Víctor Leiva, Antonio Sanhueza, Diana M. Kelmansky, Elena J. Martínez

Journal:

Computational Statistics & Data Analysis

Year:

2009

Language:

english

File:

PDF, 676 KB

english, 2009

14

Fast implementation of a scan statistic for identifying chromosomal patterns of genome wide association studies

Yan V. Sun, Douglas M. Jacobsen, Stephen T. Turner, Eric Boerwinkle, Sharon L.R. Kardia

Journal:

Computational Statistics & Data Analysis

Year:

2009

Language:

english

File:

PDF, 685 KB

english, 2009

15

A structural mixed model to shrink covariance matrices for time-course differential gene expression studies

Guillemette Marot, Jean-Louis Foulley, Florence Jaffrézic

Journal:

Computational Statistics & Data Analysis

Year:

2009

Language:

english

File:

PDF, 1.06 MB

english, 2009

16

Selecting marker genes for cancer classification using supervised weighted kernel clustering and the support vector machine

Jooyong Shim, Insuk Sohn, Sujong Kim, Jae Won Lee, Paul E. Green, Changha Hwang

Journal:

Computational Statistics & Data Analysis

Year:

2009

Language:

english

File:

PDF, 396 KB

english, 2009

17

Informative transcription factor selection using support vector machine-based generalized approximate cross validation criteria

Insuk Sohn, Jooyong Shim, Changha Hwang, Sujong Kim, Jae Won Lee

Journal:

Computational Statistics & Data Analysis

Year:

2009

Language:

english

File:

PDF, 808 KB

english, 2009

18

Assumption adequacy averaging as a concept for developing more robust methods for differential gene expression analysis

Stan Pounds, Shesh N. Rai

Journal:

Computational Statistics & Data Analysis

Year:

2009

Language:

english

File:

PDF, 577 KB

english, 2009

19

Statistically appraising process quality of affinity isolation experiments

Julia L. Sharp, John J. Borkowski, Denise Schmoyer, Don S. Daly, Samuel Purvine, William R. Cannon, Gregory B. Hurst

Journal:

Computational Statistics & Data Analysis

Year:

2009

Language:

english

File:

PDF, 857 KB

english, 2009

20

Survival prediction using gene expression data: A review and comparison

Wessel N. van Wieringen, David Kun, Regina Hampel, Anne-Laure Boulesteix

Journal:

Computational Statistics & Data Analysis

Year:

2009

Language:

english

File:

PDF, 1.18 MB

english, 2009

21

Utilizing identity-by-descent probabilities for genetic fine-mapping in population based samples, via spatial smoothing of haplotype effects

Linda Hartman, Ola Hössjer, Keith Humphreys

Journal:

Computational Statistics & Data Analysis

Year:

2009

Language:

english

File:

PDF, 1.69 MB

english, 2009

22

A robust ratio estimator of gene expression via inverse-variance weighting for cDNA microarray images

Shih-Huang Chan, Wan-Chi Chang

Journal:

Computational Statistics & Data Analysis

Year:

2009

Language:

english

File:

PDF, 2.13 MB

english, 2009

23

A mixture model approach for the analysis of small exploratory microarray experiments

W.M. Muir, G.J.M. Rosa, B.R. Pittendrigh, Z. Xu, S.D. Rider, M. Fountain, J. Ogas

Journal:

Computational Statistics & Data Analysis

Year:

2009

Language:

english

File:

PDF, 880 KB

english, 2009

24

Application of information-theoretic tests for the analysis of DNA sequences based on Markov chain models

N. Usotskaya, B. Ryabko

Journal:

Computational Statistics & Data Analysis

Year:

2009

Language:

english

File:

PDF, 587 KB

english, 2009

25

Bayesian hidden Markov model for DNA sequence segmentation: A prior sensitivity analysis

Darfiana Nur, David Allingham, Judith Rousseau, Kerrie L. Mengersen, Ross McVinish

Journal:

Computational Statistics & Data Analysis

Year:

2009

Language:

english

File:

PDF, 1.29 MB

english, 2009

26

A robust unified approach to analyzing methylation and gene expression data

Abbas Khalili, Tim Huang, Shili Lin

Journal:

Computational Statistics & Data Analysis

Year:

2009

Language:

english

File:

PDF, 1014 KB

english, 2009

27

Bayesian models for two-sample time-course microarray experiments

Claudia Angelini, Daniela De Canditiis, Marianna Pensky

Journal:

Computational Statistics & Data Analysis

Year:

2009

Language:

english

File:

PDF, 1.20 MB

english, 2009

28

Complexity control in a mixture model by the Hardy–Weinberg equilibrium

Ella Bingham, Heikki Mannila

Journal:

Computational Statistics & Data Analysis

Year:

2009

Language:

english

File:

PDF, 834 KB

english, 2009

29

A heavy-tailed empirical Bayes method for replicated microarray data

Diego Salas-Gonzalez, Ercan E. Kuruoglu, Diego P. Ruiz

Journal:

Computational Statistics & Data Analysis

Year:

2009

Language:

english

File:

PDF, 1.59 MB

english, 2009

30

Parametric and semiparametric methods for mapping quantitative trait loci

Jung-Yu Cheng, Shinn-Jia Tzeng

Journal:

Computational Statistics & Data Analysis

Year:

2009

Language:

english

File:

PDF, 453 KB

english, 2009

31

The power of linkage analysis of a disease-related endophenotype using asymmetrically ascertained sib pairs

Heejong Sung, Fei Ji, Deborah L. Levy, Steven Matthysse, Nancy Role Mendell

Journal:

Computational Statistics & Data Analysis

Year:

2009

Language:

english

File:

PDF, 1.11 MB

english, 2009

32

Tests for Gaussian graphical models

N. Verzelen, F. Villers

Journal:

Computational Statistics & Data Analysis

Year:

2009

Language:

english

File:

PDF, 868 KB

english, 2009

33

Exploration of distributional models for a novel intensity-dependent normalization procedure in censored gene expression data

Nicola Lama, Patrizia Boracchi, Elia Biganzoli

Journal:

Computational Statistics & Data Analysis

Year:

2009

Language:

english

File:

PDF, 1.79 MB

english, 2009

34

Statistical genetics & statistical genomics: Where biology, epistemology, statistics, and computation collide

David B. Allison, Peter M. Visscher, Guilherme J.M. Rosa, Christopher I. Amos

Journal:

Computational Statistics & Data Analysis

Year:

2009

Language:

english

File:

PDF, 347 KB

english, 2009

35

Editorial Board

Journal:

Computational Statistics & Data Analysis

Year:

2009

Language:

english

File:

PDF, 193 KB

english, 2009

36

Modified linear discriminant analysis approaches for classification of high-dimensional microarray data

Ping Xu, Guy N. Brock, Rudolph S. Parrish

Journal:

Computational Statistics & Data Analysis

Year:

2009

Language:

english

File:

PDF, 1.53 MB

english, 2009

Volume 53; Issue 5

Computational Statistics & Data Analysis

The beta-binomial distribution for estimating the number of false rejections in microarray gene expression studies

Deviance information criterion (DIC) in Bayesian multiple QTL mapping

Estimation of graphical models whose conditional independence graphs are interval graphs and its application to modelling linkage disequilibrium

Optimal designs to select individuals for genotyping conditional on observed binary or survival outcomes and non-genetic covariates

Excess false positive rate caused by population stratification and disease rate heterogeneity in case–control association studies

Combining quantitative trait loci analyses and microarray data: An empirical likelihood approach

The use of plasmodes as a supplement to simulations: A simple example evaluating individual admixture estimation methodologies

Transmission Disequilibrium Test (TDT) for a pair of linked marker loci

Distribution modeling and simulation of gene expression data

Optimizing design of two-stage experiments for transcriptional profiling

Simple Bayesian binary framework for discovering significant genes and classifying cancer diagnosis

Balancing type one and two errors in multiple testing for differential expression of genes

On the glog-normal distribution and its application to the gene expression problem

Fast implementation of a scan statistic for identifying chromosomal patterns of genome wide association studies

A structural mixed model to shrink covariance matrices for time-course differential gene expression studies

Selecting marker genes for cancer classification using supervised weighted kernel clustering and the support vector machine

Informative transcription factor selection using support vector machine-based generalized approximate cross validation criteria

Assumption adequacy averaging as a concept for developing more robust methods for differential gene expression analysis

Statistically appraising process quality of affinity isolation experiments

Survival prediction using gene expression data: A review and comparison

Utilizing identity-by-descent probabilities for genetic fine-mapping in population based samples, via spatial smoothing of haplotype effects

A robust ratio estimator of gene expression via inverse-variance weighting for cDNA microarray images

A mixture model approach for the analysis of small exploratory microarray experiments

Application of information-theoretic tests for the analysis of DNA sequences based on Markov chain models

Bayesian hidden Markov model for DNA sequence segmentation: A prior sensitivity analysis

A robust unified approach to analyzing methylation and gene expression data

Bayesian models for two-sample time-course microarray experiments

Complexity control in a mixture model by the Hardy–Weinberg equilibrium

A heavy-tailed empirical Bayes method for replicated microarray data

Parametric and semiparametric methods for mapping quantitative trait loci

The power of linkage analysis of a disease-related endophenotype using asymmetrically ascertained sib pairs

Tests for Gaussian graphical models

Exploration of distributional models for a novel intensity-dependent normalization procedure in censored gene expression data

Statistical genetics & statistical genomics: Where biology, epistemology, statistics, and computation collide

Editorial Board

Contents

Modified linear discriminant analysis approaches for classification of high-dimensional microarray data