Volume 3; Issue 1

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npj Precision Oncology
Volume 3; Issue 1

npj Precision Oncology

Volume 3; Issue 1

1

Utility of the JAX Clinical Knowledgebase in capture and assessment of complex genomic cancer data

Patterson, Sara E., Statz, Cara M., Yin, Taofei, Mockus, Susan M.

Journal:

npj Precision Oncology

Year:

2019

File:

PDF, 1013 KB

2019

2

Analysis across multiple tumor types provides no evidence that mutant p53 exerts dominant negative activity

Shahbandi, Ashkan, Jackson, James G.

Journal:

npj Precision Oncology

Year:

2019

File:

PDF, 670 KB

2019

3

Cancer prevention and screening: the next step in the era of precision medicine

Loomans-Kropp, Holli A., Umar, Asad

Journal:

npj Precision Oncology

Year:

2019

Language:

english

File:

PDF, 986 KB

english, 2019

4

Genomic landscape of a metastatic malignant proliferating tricholemmal tumor and its response to PI3K inhibition

Gallant, Jean-Nicolas, Sewell, Andrew, Almodovar, Karinna, Wang, Qingguo, Dahlman, Kimberly B., Abramson, Richard G., Kapp, Meghan E., Brown, Brandee T., Boyd, Kelli L., Gilbert, Jill, Cohen, Daniel N

Journal:

npj Precision Oncology

Year:

2019

File:

PDF, 1.23 MB

2019

5

Analysis across multiple tumor types provides no evidence that mutant p53 exerts dominant negative activity

Shahbandi, Ashkan, Jackson, James G.

Journal:

npj Precision Oncology

Year:

2019

Language:

english

File:

PDF, 670 KB

english, 2019

6

Genomic landscape of a metastatic malignant proliferating tricholemmal tumor and its response to PI3K inhibition

Gallant, Jean-Nicolas, Sewell, Andrew, Almodovar, Karinna, Wang, Qingguo, Dahlman, Kimberly B., Abramson, Richard G., Kapp, Meghan E., Brown, Brandee T., Boyd, Kelli L., Gilbert, Jill, Cohen, Daniel N

Journal:

npj Precision Oncology

Year:

2019

Language:

english

File:

PDF, 1.23 MB

english, 2019

7

Accumulation of genetic and epigenetic alterations in normal cells and cancer risk

Takeshima, Hideyuki, Ushijima, Toshikazu

Journal:

npj Precision Oncology

Year:

2019

Language:

english

File:

PDF, 1.69 MB

english, 2019

8

CRISPR/Cas9 – An evolving biological tool kit for cancer biology and oncology

Tian, Xueli, Gu, Tingxuan, Patel, Satyananda, Bode, Ann M., Lee, Mee-Hyun, Dong, Zigang

Journal:

npj Precision Oncology

Year:

2019

Language:

english

File:

PDF, 852 KB

english, 2019

9

The PGC-1/ERR network and its role in precision oncology

De Vitto, Humberto, Bode, Ann M., Dong, Zigang

Journal:

npj Precision Oncology

Year:

2019

Language:

english

File:

PDF, 1.88 MB

english, 2019

10

A plasma protein derived TGFβ signature is a prognostic indicator in triple negative breast cancer

Katayama, Hiroyuki, Tsou, Peiling, Kobayashi, Makoto, Capello, Michela, Wang, Hong, Esteva, Francisco, Disis, Mary L., Hanash, Samir

Journal:

npj Precision Oncology

Year:

2019

Language:

english

File:

PDF, 844 KB

english, 2019

11

Precise definition of PTEN C-terminal epitopes and its implications in clinical oncology

Mingo, Janire, Luna, Sandra, Gaafar, Ayman, Nunes-Xavier, Caroline E., Torices, Leire, Mosteiro, Lorena, Ruiz, Rebeca, Guerra, Isabel, Llarena, Roberto, Angulo, Javier C., López, José I., Pulido, Rafa

Journal:

npj Precision Oncology

Year:

2019

Language:

english

File:

PDF, 1.14 MB

english, 2019

12

Resistance to paclitaxel is associated with a variant of the gene BCL2 in multiple tumor types

Ben-Hamo, Rotem, Zilberberg, Alona, Cohen, Helit, Bahar-Shany, Keren, Wachtel, Chaim, Korach, Jacob, Aviel-Ronen, Sarit, Barshack, Iris, Barash, Danny, Levanon, Keren, Efroni, Sol

Journal:

npj Precision Oncology

Year:

2019

Language:

english

File:

PDF, 1.79 MB

english, 2019

13

Resistance to paclitaxel is associated with a variant of the gene BCL2 in multiple tumor types

Ben-Hamo, Rotem, Zilberberg, Alona, Cohen, Helit, Bahar-Shany, Keren, Wachtel, Chaim, Korach, Jacob, Aviel-Ronen, Sarit, Barshack, Iris, Barash, Danny, Levanon, Keren, Efroni, Sol

Journal:

npj Precision Oncology

Year:

2019

File:

PDF, 1.79 MB

2019

14

Precision oncology of lung cancer: genetic and genomic differences in Chinese population

Shen, Hongbing, Zhu, Meng, Wang, Cheng

Journal:

npj Precision Oncology

Year:

2019

Language:

english

File:

PDF, 665 KB

english, 2019

15

Pan-cancer analysis connects tumor matrisome to immune response

Bin Lim, Su, Chua, Melvin Lee Kiang, Yeong, Joe Poh Sheng, Tan, Swee Jin, Lim, Wan-Teck, Lim, Chwee Teck

Journal:

npj Precision Oncology

Year:

2019

Language:

english

File:

PDF, 2.73 MB

english, 2019

16

Enzyme-mediated depletion of l-cyst(e)ine synergizes with thioredoxin reductase inhibition for suppression of pancreatic tumor growth

Kshattry, Sabin, Saha, Achinto, Gries, Paul, Tiziani, Stefano, Stone, Everett, Georgiou, George, DiGiovanni, John

Journal:

npj Precision Oncology

Year:

2019

Language:

english

File:

PDF, 2.77 MB

english, 2019

17

Tumor inherent interferon regulators as biomarkers of long-term chemotherapeutic response in TNBC

Brockwell, Natasha K., Rautela, Jai, Owen, Katie L., Gearing, Linden J., Deb, Siddhartha, Harvey, Kate, Spurling, Alex, Zanker, Damien, Chan, Chia-Ling, Cumming, Helen E., Deng, Niantao, Zakhour, Jasm

Journal:

npj Precision Oncology

Year:

2019

Language:

english

File:

PDF, 7.45 MB

english, 2019

18

Rapid MALDI mass spectrometry imaging for surgical pathology

Basu, Sankha S., Regan, Michael S., Randall, Elizabeth C., Abdelmoula, Walid M., Clark, Amanda R., Gimenez-Cassina Lopez, Begoña, Cornett, Dale S., Haase, Andreas, Santagata, Sandro, Agar, Nathalie Y.

Journal:

npj Precision Oncology

Year:

2019

Language:

english

File:

PDF, 3.47 MB

english, 2019

19

Trastuzumab and pertuzumab in circulating tumor DNA ERBB2-amplified HER2-positive refractory cholangiocarcinoma

Yarlagadda, Bhavya, Kamatham, Vaishnavi, Ritter, Ashton, Shahjehan, Faisal, Kasi, Pashtoon M.

Journal:

npj Precision Oncology

Year:

2019

Language:

english

File:

PDF, 911 KB

english, 2019

20

Engineered models to parse apart the metastatic cascade

Hapach, Lauren A., Mosier, Jenna A., Wang, Wenjun, Reinhart-King, Cynthia A.

Journal:

npj Precision Oncology

Year:

2019

Language:

english

File:

PDF, 1.57 MB

english, 2019

21

Rapid MALDI mass spectrometry imaging for surgical pathology

Basu, Sankha S., Regan, Michael S., Randall, Elizabeth C., Abdelmoula, Walid M., Clark, Amanda R., Gimenez-Cassina Lopez, Begoña, Cornett, Dale S., Haase, Andreas, Santagata, Sandro, Agar, Nathalie Y.

Journal:

npj Precision Oncology

Year:

2019

File:

PDF, 3.47 MB

2019

22

Trastuzumab and pertuzumab in circulating tumor DNA ERBB2-amplified HER2-positive refractory cholangiocarcinoma

Yarlagadda, Bhavya, Kamatham, Vaishnavi, Ritter, Ashton, Shahjehan, Faisal, Kasi, Pashtoon M.

Journal:

npj Precision Oncology

Year:

2019

File:

PDF, 911 KB

2019

23

Engineered models to parse apart the metastatic cascade

Hapach, Lauren A., Mosier, Jenna A., Wang, Wenjun, Reinhart-King, Cynthia A.

Journal:

npj Precision Oncology

Year:

2019

File:

PDF, 1.57 MB

2019

24

Liquid biopsy: one cell at a time

Lim, Su Bin, Di Lee, Wen, Vasudevan, Jyothsna, Lim, Wan-Teck, Lim, Chwee Teck

Journal:

npj Precision Oncology

Year:

2019

Language:

english

File:

PDF, 1.15 MB

english, 2019

25

Risk of second primary malignancies in head and neck cancer patients treated with definitive radiotherapy

Ng, Sweet Ping, Pollard, Courtney, Kamal, Mona, Ayoub, Zeina, Garden, Adam S., Bahig, Houda, Gunn, G. Brandon, Frank, Steven J., Skinner, Heath D., Phan, Jack, Berends, Joel, Morrison, William H., Joh

Journal:

npj Precision Oncology

Year:

2019

Language:

english

File:

PDF, 1.01 MB

english, 2019

26

Interaction of tumor cells and astrocytes promotes breast cancer brain metastases through TGF-β2/ANGPTL4 axes

Gong, Xianghui, Hou, Zhimin, Endsley, Michael P., Gronseth, Emily I., Rarick, Kevin R., Jorns, Julie M., Yang, Qiuhui, Du, Zhenggui, Yan, Ke, Bordas, Michelle L., Gershan, Jill, Deepak, Parashar, Geet

Journal:

npj Precision Oncology

Year:

2019

Language:

english

File:

PDF, 1.44 MB

english, 2019

27

A machine learning based delta-radiomics process for early prediction of treatment response of pancreatic cancer

Nasief, Haidy, Zheng, Cheng, Schott, Diane, Hall, William, Tsai, Susan, Erickson, Beth, Allen Li, X.

Journal:

npj Precision Oncology

Year:

2019

Language:

english

File:

PDF, 4.48 MB

english, 2019

28

Unraveling the role of peroxisome proliferator-activated receptor-β/δ (PPARβ/δ) expression in colon carcinogenesis

Peters, Jeffrey M., Walter, Vonn, Patterson, Andrew D., Gonzalez, Frank J.

Journal:

npj Precision Oncology

Year:

2019

Language:

english

File:

PDF, 1.01 MB

english, 2019

29

Risk of second primary malignancies in head and neck cancer patients treated with definitive radiotherapy

Ng, Sweet Ping, Pollard, Courtney, Kamal, Mona, Ayoub, Zeina, Garden, Adam S., Bahig, Houda, Gunn, G. Brandon, Frank, Steven J., Skinner, Heath D., Phan, Jack, Berends, Joel, Morrison, William H., Joh

Journal:

npj Precision Oncology

Year:

2019

File:

PDF, 1.01 MB

2019

30

Propranolol exhibits activity against hemangiomas independent of beta blockade

Sasaki, Maiko, North, Paula E., Elsey, Justin, Bubley, Jeffrey, Rao, Shikha, Jung, Yoonhee, Wu, Shengnan, Zou, Ming-Hui, Pollack, Brian P., Kumar, Jayanth, Singh, Hartej, Arbiser, Jack L.

Journal:

npj Precision Oncology

Year:

2019

Language:

english

File:

PDF, 4.01 MB

english, 2019

31

Characterization of Mucosal Dysbiosis of Early Colonic Neoplasia

Hong, Bo-young, Ideta, Takayasu, Lemos, Bruno S., Igarashi, Yuichi, Tan, Yuliana, DiSiena, Michael, Mo, Allen, Birk, John W., Forouhar, Faripour, Devers, Thomas J., Weinstock, George M., Rosenberg, Da

Journal:

npj Precision Oncology

Year:

2019

Language:

english

File:

PDF, 2.86 MB

english, 2019

32

Propranolol exhibits activity against hemangiomas independent of beta blockade

Sasaki, Maiko, North, Paula E., Elsey, Justin, Bubley, Jeffrey, Rao, Shikha, Jung, Yoonhee, Wu, Shengnan, Zou, Ming-Hui, Pollack, Brian P., Kumar, Jayanth, Singh, Hartej, Arbiser, Jack L.

Journal:

npj Precision Oncology

Year:

2019

File:

PDF, 4.01 MB

2019

33

Characterization of Mucosal Dysbiosis of Early Colonic Neoplasia

Hong, Bo-young, Ideta, Takayasu, Lemos, Bruno S., Igarashi, Yuichi, Tan, Yuliana, DiSiena, Michael, Mo, Allen, Birk, John W., Forouhar, Faripour, Devers, Thomas J., Weinstock, George M., Rosenberg, Da

Journal:

npj Precision Oncology

Year:

2019

File:

PDF, 2.86 MB

2019

34

Real-time intraoperative diagnosis by deep neural network driven multiphoton virtual histology

You, Sixian, Sun, Yi, Yang, Lin, Park, Jaena, Tu, Haohua, Marjanovic, Marina, Sinha, Saurabh, Boppart, Stephen A.

Journal:

npj Precision Oncology

Year:

2019

Language:

english

File:

PDF, 5.23 MB

english, 2019

35

Interferon-γ signaling is associated with BRCA1 loss-of-function mutations in high grade serous ovarian cancer

Cardenas, Horacio, Jiang, Guanglong, Thomes Pepin, Jessica, Parker, J. Brandon, Condello, Salvatore, Nephew, Kenneth P., Nakshatri, Harikrishna, Chakravarti, Debabrata, Liu, Yunlong, Matei, Daniela

Journal:

npj Precision Oncology

Year:

2019

File:

PDF, 2.28 MB

2019

36

Liquid biopsy for minimal residual disease detection in leukemia using a portable blast cell biochip

Khoo, Bee Luan, Shang, Menglin, Ng, Chin Hin, Lim, Chwee Teck, Chng, Wee Joo, Han, Jongyoon

Journal:

npj Precision Oncology

Year:

2019

File:

PDF, 3.95 MB

2019

37

Synchronous inhibition of mTOR and VEGF/NRP1 axis impedes tumor growth and metastasis in renal cancer

Pal, Krishnendu, Madamsetty, Vijay Sagar, Dutta, Shamit Kumar, Wang, Enfeng, Angom, Ramcharan Singh, Mukhopadhyay, Debabrata

Journal:

npj Precision Oncology

Year:

2019

File:

PDF, 3.50 MB

2019

38

Real-time intraoperative diagnosis by deep neural network driven multiphoton virtual histology

You, Sixian, Sun, Yi, Yang, Lin, Park, Jaena, Tu, Haohua, Marjanovic, Marina, Sinha, Saurabh, Boppart, Stephen A.

Journal:

npj Precision Oncology

Year:

2019

File:

PDF, 5.23 MB

2019

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