Volume 12; Issue 2

Journal of Integrative Bioinformatics

Volume 12; Issue 2

1

Specifications of Standards in Systems and Synthetic Biology

Schreiber, Falk, Bader, Gary D., Golebiewski, Martin, Hucka, Michael, Kormeier, Benjamin, Le Novère, Nicolas, Myers, Chris, Nickerson, David, Sommer, Björn, Waltemath, Dagmar, Weise, Stephan

Journal:

Journal of Integrative Bioinformatics

Year:

2015

Language:

english

File:

PDF, 102 KB

english, 2015

2

The CellML 1.1 Specification

Cuellar, Autumn, Hedley, Warren, Nelson, Melanie, Lloyd, Catherine, Halstead, Matt, Bullivant, David, Nickerson, David, Hunter, Peter, Nielsen, Poul

Journal:

Journal of Integrative Bioinformatics

Year:

2015

Language:

english

File:

PDF, 1.39 MB

english, 2015

3

The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 1 Core

Hucka, Michael, Bergmann, Frank T., Hoops, Stefan, Keating, Sarah M., Sahle, Sven, Schaff, James C., Smith, Lucian P., Wilkinson, Darren J.

Journal:

Journal of Integrative Bioinformatics

Year:

2015

Language:

english

File:

PDF, 2.28 MB

english, 2015

4

SBML Level 3 package: Hierarchical Model Composition, Version 1 Release 3

Smith, Lucian P., Hucka, Michael, Hoops, Stefan, Finney, Andrew, Ginkel, Martin, Myers, Chris J., Moraru, Ion, Liebermeister, Wolfram

Journal:

Journal of Integrative Bioinformatics

Year:

2015

Language:

english

File:

PDF, 1.18 MB

english, 2015

5

The Systems Biology Markup Language (SBML) Level 3 Package: Layout, Version 1 Core

Gauges, Ralph, Rost, Ursula, Sahle, Sven, Wengler, Katja, Bergmann, Frank T.

Journal:

Journal of Integrative Bioinformatics

Year:

2015

Language:

english

File:

PDF, 2.31 MB

english, 2015

6

SBML Level 3 package: Qualitative Models, Version 1, Release 1

Chaouiya, Claudine, Keating, Sarah M., Berenguier, Duncan, Naldi, Aurélien, Thieffry, Denis, Iersel, Martijn P. van, Le Novère, Nicolas, Helikar, Tomáš

Journal:

Journal of Integrative Bioinformatics

Year:

2015

Language:

english

File:

PDF, 1013 KB

english, 2015

7

The Systems Biology Markup Language (SBML) Level 3 Package: Flux Balance Constraints

Olivier, Brett G., Bergmann, Frank T.

Journal:

Journal of Integrative Bioinformatics

Year:

2015

Language:

english

File:

PDF, 1.00 MB

english, 2015

8

Systems Biology Graphical Notation: Entity Relationship language Level 1 Version 2

Sorokin, Anatoly, Le Novère, Nicolas, Luna, Augustin, Czauderna, Tobias, Demir, Emek, Haw, Robin, Mi, Huaiyu, Moodie, Stuart, Schreiber, Falk, Villéger, Alice

Journal:

Journal of Integrative Bioinformatics

Year:

2015

Language:

english

File:

PDF, 2.53 MB

english, 2015

9

COMBINE Archive Specification Version 1

Bergmann, Frank T., Rodriguez, Nicolas, Le Novère, Nicolas

Journal:

Journal of Integrative Bioinformatics

Year:

2015

Language:

english

File:

PDF, 711 KB

english, 2015

10

Systems Biology Graphical Notation: Process Description language Level 1 Version 1.3

Moodie, Stuart, Le Novère, Nicolas, Demir, Emek, Mi, Huaiyu, Villéger, Alice

Journal:

Journal of Integrative Bioinformatics

Year:

2015

Language:

english

File:

PDF, 1.73 MB

english, 2015

11

Synthetic Biology Open Language (SBOL) Version 2.0.0

Bartley, Bryan, Beal, Jacob, Clancy, Kevin, Misirli, Goksel, Roehner, Nicholas, Oberortner, Ernst, Pocock, Matthew, Bissell, Michael, Madsen, Curtis, Nguyen, Tramy, Zhang, Zhen, Gennari, John H., Myer

Journal:

Journal of Integrative Bioinformatics

Year:

2015

Language:

english

File:

PDF, 1.65 MB

english, 2015

12

Systems Biology Graphical Notation: Activity Flow language Level 1 Version 1.2

Mi, Huaiyu, Schreiber, Falk, Moodie, Stuart, Czauderna, Tobias, Demir, Emek, Haw, Robin, Luna, Augustin, Le Novère, Nicolas, Sorokin, Anatoly, Villéger, Alice

Journal:

Journal of Integrative Bioinformatics

Year:

2015

Language:

english

File:

PDF, 1.45 MB

english, 2015