Volume 4; Issue 3

Journal of Integrative Bioinformatics

Volume 4; Issue 3

1

A High-Level Petri Net Framework for Genetic Regulatory Networks

Banks, Richard, Steggles, L. Jason

Journal:

Journal of Integrative Bioinformatics

Year:

2007

Language:

english

File:

PDF, 703 KB

english, 2007

2

From MIN model to ordinary differential equations

Yartseva, A., Devillers, R., Klaudel, H., Képès, F.

Journal:

Journal of Integrative Bioinformatics

Year:

2007

Language:

english

File:

PDF, 4.51 MB

english, 2007

3

The OXL format for the exchange of integrated datasets

Taubert, Jan, Sieren, Klaus Peter, Hindle, Matthew, Hoekman, Berend, Winnenburg, Rainer, Philippi, Stephan, Rawlings, Chris, Köhler, Jacob

Journal:

Journal of Integrative Bioinformatics

Year:

2007

Language:

english

File:

PDF, 465 KB

english, 2007

4

VINEdb: a data warehouse for integration and interactive exploration of life science data

Hariharaputran, Sridhar, Töpel, Thoralf, Brockschmidt, Björn, Hofestädt, Ralf

Journal:

Journal of Integrative Bioinformatics

Year:

2007

Language:

english

File:

PDF, 369 KB

english, 2007

5

Developmental Anatomy Ontology of Zebrafish: an Integrative semantic framework

Belmamoune, Mounia, Verbeek, Fons J.

Journal:

Journal of Integrative Bioinformatics

Year:

2007

Language:

english

File:

PDF, 852 KB

english, 2007

6

Stochastic effects in a compartmental model for mitotic checkpoint regulation

Ibrahim, Bashar, Dittrich, Peter, Diekmann, Stephan, Schmitt, Eberhard

Journal:

Journal of Integrative Bioinformatics

Year:

2007

Language:

english

File:

PDF, 1.49 MB

english, 2007

7

Data Linkage Graph: computation, querying and knowledge discovery of life science database networks

Lange, Matthias, Himmelbach, Axel, Schweizer, Patrick, Scholz, Uwe

Journal:

Journal of Integrative Bioinformatics

Year:

2007

Language:

english

File:

PDF, 816 KB

english, 2007

8

A Methodology for Comparative Functional Genomics

Alam, Intikhab, Cornell, Mike, Soanes, Darren M., Hedeler, Cornelia, Wong, Han Min, Rattray, Magnus, Hubbard, Simon J., Talbot, Nicholas J., Oliver, Stephen G., Paton, Norman W.

Journal:

Journal of Integrative Bioinformatics

Year:

2007

Language:

english

File:

PDF, 530 KB

english, 2007

9

Exploring PSI-MI XML Collections Using DescribeX

Samavi, Reza, Consens, Mariano, Khatchadourian, Shahan, Topaloglou, Thodoros

Journal:

Journal of Integrative Bioinformatics

Year:

2007

Language:

english

File:

PDF, 860 KB

english, 2007

10

Community-based Linking of Biological Network Resources: Databases, Formats and Tools

Telgkamp, Michael, Koschützki, Dirk, Schwöbbermeyer, Henning, Schreiber, Falk

Journal:

Journal of Integrative Bioinformatics

Year:

2007

Language:

english

File:

PDF, 1.71 MB

english, 2007

11

Mining for Single Nucleotide Polymorphisms in Expressed Sequence Tags of European Sea Bass

Souche, E. L., Hellemans, B., Van Houdt, J. K. J., Canario, A., Klages, S., Reinhardt, R., Volckaert, F. A. M.

Journal:

Journal of Integrative Bioinformatics

Year:

2007

Language:

english

File:

PDF, 362 KB

english, 2007

12

Functional and Transcriptional Coherency of Modules in the Human Protein Interaction Network

Futschik, Matthias E., Chaurasia, Gautam, Tschaut, Anna, Russ, Jenny, Babu, M. Madan, Herzel, Hanspeter

Journal:

Journal of Integrative Bioinformatics

Year:

2007

Language:

english

File:

PDF, 548 KB

english, 2007

13

Prediction of protein-protein interactions using one-class classification methods and integrating diverse biological data

Reyes, José A., Gilbert, David

Journal:

Journal of Integrative Bioinformatics

Year:

2007

Language:

english

File:

PDF, 396 KB

english, 2007

14

CIDA: An integrated software for the design, characterisation and global comparison of microarrays

Khalid, Sabah, Khan, Mohsin, Symonds, Alistair, Fraser, Karl, Wang, Ping, Liu, Xiaohui, Li, Suling

Journal:

Journal of Integrative Bioinformatics

Year:

2007

Language:

english

File:

PDF, 682 KB

english, 2007

15

Mapping protein information to disease terminologies

Mottaz, Anaïs, Yip, Yum L., Ruch, Patrick, Veuthey, Anne-Lise

Journal:

Journal of Integrative Bioinformatics

Year:

2007

Language:

english

File:

PDF, 427 KB

english, 2007

16

Integration of constraints documented in SBML, SBO, and the SBML Manual facilitates validation of biological models

Lister, Allyson L., Pocock, Matthew, Wipat, Anil

Journal:

Journal of Integrative Bioinformatics

Year:

2007

Language:

english

File:

PDF, 374 KB

english, 2007

17

Reactome: An integrated expert model of human molecular processes and access toolkit

Bono, Bernard de, Vastrik, Imre, D’Eustachio, Peter, Schmidt, Esther, Gopinath, Gopal, Croft, David, Gillespie, Marc, Jassal, Bijay, Lewis, Suzanna, Matthews, Lisa, Wu, Guanming, Birney, Ewan, Stein,

Journal:

Journal of Integrative Bioinformatics

Year:

2007

Language:

english

File:

PDF, 807 KB

english, 2007

18

Defining Mapping Mashups with BioXMash

Hunt, Ela, Jakubowska, Joanna, Bösinger, Caroline, Norrie, Moira C.

Journal:

Journal of Integrative Bioinformatics

Year:

2007

Language:

english

File:

PDF, 710 KB

english, 2007

19

Monophyletic clustering and characterization of protein families

Zhang, Jian, Zhao, Zhiyuan, Evershed, Jennifer, Li, Guoying

Journal:

Journal of Integrative Bioinformatics

Year:

2007

Language:

english

File:

PDF, 657 KB

english, 2007

20

IMS2 – An integrated medical software system for early lung cancer detection using ion mobility spectrometry data of human breath

Baumbach, Jan, Bunkowski, Alexander, Lange, Sita, Oberwahrenbrock, Timm, Kleinbölting, Nils, Rahmann, Sven, Baumbach, Jörg Ingo

Journal:

Journal of Integrative Bioinformatics

Year:

2007

Language:

english

File:

PDF, 636 KB

english, 2007

21

Analysis of integrated biomolecular networks using a generic network analysis suite

Oesterheld, Matthias, Mewes, Hans Werner, Stümpflen, Volker

Journal:

Journal of Integrative Bioinformatics

Year:

2007

File:

PDF, 600 KB

2007

22

Supervised classification of combined copy number and gene expression data

Riccadonna, S., Jurman, G., Merler, S., Paoli, S., Quattrone, A., Furlanello, C.

Journal:

Journal of Integrative Bioinformatics

Year:

2007

File:

PDF, 554 KB

2007

23

GeneBrowser: an approach for integration and functional classification of genomic data

Arrais, Joel, Santos, Bruno, Fernandes, João, Carreto, Laura, Santos, Manuel A.S., Oliveira, José Luis

Journal:

Journal of Integrative Bioinformatics

Year:

2007

File:

PDF, 454 KB

2007

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