Volume 16

Biophysics and Physicobiology

Volume 16

1

Millimeter-sized belt-like pattern formation of actin filaments in solution by interacting with surface myosin in vitro

Ozawa, Kentaro, Taomori, Hirotaka, Hoshida, Masayuki, Kunita, Ituki, Sakurazawa, Sigeru, Honda, Hajime

Journal:

Biophysics and Physicobiology

Year:

2019

File:

PDF, 6.01 MB

2019

2

Single-particle analysis of full-length human poly(ADP-ribose) polymerase 1

Kouyama, Kenichi, Mayanagi, Kouta, Nakae, Setsu, Nishi, Yoshisuke, Miwa, Masanao, Shirai, Tsuyoshi

Journal:

Biophysics and Physicobiology

Year:

2019

Language:

english

File:

PDF, 5.68 MB

english, 2019

3

Relationship between conformation shift and disease related variation sites in ATP-binding cassette transporter proteins

Sakamoto, Mika, Suzuki, Hirofumi, Yura, Kei

Journal:

Biophysics and Physicobiology

Year:

2019

File:

PDF, 7.22 MB

2019

4

Structural and functional properties of Grb2 SH2 dimer in CD28 binding

Hosoe, Yuhi, Numoto, Nobutaka, Inaba, Satomi, Ogawa, Shuhei, Morii, Hisayuki, Abe, Ryo, Ito, Nobutoshi, Oda, Masayuki

Journal:

Biophysics and Physicobiology

Year:

2019

File:

PDF, 2.09 MB

2019

5

Relationship between conformation shift and disease related variation sites in ATP-binding cassette transporter proteins

Sakamoto, Mika, Suzuki, Hirofumi, Yura, Kei

Journal:

Biophysics and Physicobiology

Year:

2019

Language:

english

File:

PDF, 7.22 MB

english, 2019

6

Structural and functional properties of Grb2 SH2 dimer in CD28 binding

Hosoe, Yuhi, Numoto, Nobutaka, Inaba, Satomi, Ogawa, Shuhei, Morii, Hisayuki, Abe, Ryo, Ito, Nobutoshi, Oda, Masayuki

Journal:

Biophysics and Physicobiology

Year:

2019

Language:

english

File:

PDF, 2.09 MB

english, 2019

7

Targeted delivery using membrane vesicles in prokaryotes

Tashiro, Yosuke, Takaki, Kotaro, Futamata, Hiroyuki

Journal:

Biophysics and Physicobiology

Year:

2019

Language:

english

File:

PDF, 1.88 MB

english, 2019

8

Synchrotron-radiation vacuum-ultraviolet circular dichroism spectroscopy in structural biology: an overview

Gekko, Kunihiko

Journal:

Biophysics and Physicobiology

Year:

2019

Language:

english

File:

PDF, 859 KB

english, 2019

9

Gating modulation of the KCNQ1 channel by KCNE proteins studied by voltage-clamp fluorometry

Journal:

Biophysics and Physicobiology

Year:

2019

Language:

english

File:

PDF, 1.96 MB

english, 2019

10

Ab-initio study of pyrrole ring deformation in the indole group of 5-HT interacting with water molecules

Odai, Kei, Sugimoto, Tohru, Ito, Etsuro

Journal:

Biophysics and Physicobiology

Year:

2019

Language:

english

File:

PDF, 2.60 MB

english, 2019

11

A novel role of oxytocin: Oxytocin-induced well-being in humans

Ito, Etsuro, Shima, Rei, Yoshioka, Tohru

Journal:

Biophysics and Physicobiology

Year:

2019

Language:

english

File:

PDF, 1.47 MB

english, 2019

12

A novel role of oxytocin: Oxytocin-induced well-being in humans

Ito, Etsuro, Shima, Rei, Yoshioka, Tohru

Journal:

Biophysics and Physicobiology

Year:

2019

File:

PDF, 1.47 MB

2019

13

Characterization of X-ray diffraction intensity function from a biological molecule for single particle imaging

Tokuhisa, Atsushi

Journal:

Biophysics and Physicobiology

Year:

2019

Language:

english

File:

PDF, 2.03 MB

english, 2019

14

Molecular dynamics simulations and linear response theories jointly describe biphasic responses of myoglobin relaxation and reveal evolutionarily conserved frequent communicators

Huang, Bang-Chieh, Yang, Lee-Wei

Journal:

Biophysics and Physicobiology

Year:

2019

Language:

english

File:

PDF, 6.44 MB

english, 2019

15

Characterization of X-ray diffraction intensity function from a biological molecule for single particle imaging

Tokuhisa, Atsushi

Journal:

Biophysics and Physicobiology

Year:

2019

File:

PDF, 2.03 MB

2019

16

Molecular dynamics simulations and linear response theories jointly describe biphasic responses of myoglobin relaxation and reveal evolutionarily conserved frequent communicators

Huang, Bang-Chieh, Yang, Lee-Wei

Journal:

Biophysics and Physicobiology

Year:

2019

File:

PDF, 6.44 MB

2019

17

Replica exchange molecular dynamics simulation study on the mechanism of desiccation-induced structuralization of an intrinsically disordered peptide as a model of LEA proteins

Nishimoto, Tatsushi, Takahashi, Yuta, Miyama, Shohei, Furuta, Tadaomi, Sakurai, Minoru

Journal:

Biophysics and Physicobiology

Year:

2019

File:

PDF, 3.37 MB

2019

18

Cancellation between auto- and mutual correlation contributions of protein/water dynamics in terahertz time-domain spectra

Joti, Yasumasa, Kitao, Akio

Journal:

Biophysics and Physicobiology

Year:

2019

File:

PDF, 3.34 MB

2019

19

More efficient screening of protein-protein complex model structures for reducing the number of candidates

Takemura, Kazuhiro, Kitao, Akio

Journal:

Biophysics and Physicobiology

Year:

2019

File:

PDF, 2.00 MB

2019

20

Polymer brush in articular cartilage lubrication: Nanoscale modelling and simulation

Kajinami, Nobuhiko, Matsumoto, Mitsuhiro

Journal:

Biophysics and Physicobiology

Year:

2019

Language:

english

File:

PDF, 4.93 MB

english, 2019

21

A collective motion description of tubulin βT7 loop dynamics

Chattopadhyaya, Sarbani, Chakravorty, Debamitra, Basu, Gautam

Journal:

Biophysics and Physicobiology

Year:

2019

File:

PDF, 6.88 MB

2019

22

Consistency principle for protein design

Koga, Rie, Koga, Nobuyasu

Journal:

Biophysics and Physicobiology

Year:

2019

File:

PDF, 1.93 MB

2019

23

ATP effects on response of human erythrocyte membrane to high pressure

Yamaguchi, Takeo, Fukuzaki, Shunji

Journal:

Biophysics and Physicobiology

Year:

2019

Language:

english

File:

PDF, 1.57 MB

english, 2019

24

Snake cube puzzle and protein folding

Journal:

Biophysics and Physicobiology

Year:

2019

File:

PDF, 1.82 MB

2019

25

Free energy profile for unwrapping outer superhelical turn of CENP-A nucleosome

Kono, Hidetoshi, Sakuraba, Shun, Ishida, Hisashi

Journal:

Biophysics and Physicobiology

Year:

2019

File:

PDF, 2.26 MB

2019

26

Confirmation of the formation of salt bridges in the denatured state of CutA1 protein using molecular dynamics simulations

Yutani, Katsuhide, Matsuura, Yoshinori, Joti, Yasumasa

Journal:

Biophysics and Physicobiology

Year:

2019

Language:

english

File:

PDF, 6.29 MB

english, 2019

27

Protein structure predictions by enhanced conformational sampling methods

Journal:

Biophysics and Physicobiology

Year:

2019

Language:

english

File:

PDF, 7.96 MB

english, 2019

28

A tool written in Scala for preparation and analysis in MD simulation and 3D-RISM calculation of biomolecules

Onishi, Itaru, Tsuji, Hiroto, Irisa, Masayuki

Journal:

Biophysics and Physicobiology

Year:

2019

Language:

english

File:

PDF, 1.78 MB

english, 2019

29

Allosteric response to ligand binding: Molecular dynamics study of the N-terminal domains in IP3 receptor

Moritsugu, Kei, Ito, Tsubasa, Kidera, Akinori

Journal:

Biophysics and Physicobiology

Year:

2019

File:

PDF, 3.94 MB

2019

30

Energetics of cosolvent effect on peptide aggregation

Matubayasi, Nobuyuki, Masutani, Keiichi

Journal:

Biophysics and Physicobiology

Year:

2019

File:

PDF, 1.21 MB

2019

31

Mechanism of the light-driven proton pump of bacteriorhodopsin based on the consistency principle

Kataoka, Mikio, Kamikubo, Hironari

Journal:

Biophysics and Physicobiology

Year:

2019

File:

PDF, 2.13 MB

2019

32

Food deprivation changes chemotaxis behavior in Caenorhabditis elegans

Shimizu, Kei, Ashida, Keita, Hotta, Kohji, Oka, Kotaro

Journal:

Biophysics and Physicobiology

Year:

2019

File:

PDF, 1.37 MB

2019

33

Second harmonic generation polarization microscopy as a tool for protein structure analysis

Kaneshiro, Junichi, Okada, Yasushi, Shima, Tomohiro, Tsujii, Mika, Imada, Katsumi, Ichimura, Taro, Watanabe, Tomonobu M.

Journal:

Biophysics and Physicobiology

Year:

2019

File:

PDF, 5.45 MB

2019

34

Dynamic properties of oligomers that characterize low-frequency normal modes

Wako, Hiroshi, Endo, Shigeru

Journal:

Biophysics and Physicobiology

Year:

2019

Language:

english

File:

PDF, 3.22 MB

english, 2019

35

GÅ model revisited

Journal:

Biophysics and Physicobiology

Year:

2019

Language:

english

File:

PDF, 1.57 MB

english, 2019

36

Normal mode analysis calculation for a full-atom model with a smaller number of degrees of freedom for huge protein molecules

Endo, Shigeru, Wako, Hiroshi

Journal:

Biophysics and Physicobiology

Year:

2019

File:

PDF, 1.11 MB

2019

37

Prediction of the secondary structure of short DNA aptamers

Afanasyeva, Arina, Nagao, Chioko, Mizuguchi, Kenji

Journal:

Biophysics and Physicobiology

Year:

2019

File:

PDF, 4.26 MB

2019

38

Normal mode analysis and beyond

Yamato, Takahisa, LaprÃ©vote, Olivier

Journal:

Biophysics and Physicobiology

Year:

2019

File:

PDF, 1.74 MB

2019

39

Bohr equation and the lost allosteric Bohr effects in symmetry

Journal:

Biophysics and Physicobiology

Year:

2019

File:

PDF, 2.28 MB

2019

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