Volume 2012

Main
Database
Volume 2012

Database

Volume 2012

1

Improving links between literature and biological data with text mining: a case study with GEO, PDB and MEDLINE

Neveol, A., Wilbur, W. J., Lu, Z.

Journal:

Year:

2012

Language:

english

File:

PDF, 278 KB

english, 2012

2

Directly e-mailing authors of newly published papers encourages community curation

Bunt, S. M., Grumbling, G. B., Field, H. I., Marygold, S. J., Brown, N. H., Millburn, G. H.

Journal:

Year:

2012

Language:

english

File:

PDF, 906 KB

english, 2012

3

Targeted journal curation as a method to improve data currency at the Comparative Toxicogenomics Database

Davis, A. P., Johnson, R. J., Lennon-Hopkins, K., Sciaky, D., Rosenstein, M. C., Wiegers, T. C., Mattingly, C. J.

Journal:

Year:

2012

Language:

english

File:

PDF, 1.07 MB

english, 2012

4

CancerMA: a web-based tool for automatic meta-analysis of public cancer microarray data

Feichtinger, J., McFarlane, R. J., Larcombe, L. D.

Journal:

Year:

2012

Language:

english

File:

PDF, 1.87 MB

english, 2012

5

MuteinDB: the mutein database linking substrates, products and enzymatic reactions directly with genetic variants of enzymes

Braun, A., Halwachs, B., Geier, M., Weinhandl, K., Guggemos, M., Marienhagen, J., Ruff, A. J., Schwaneberg, U., Rabin, V., Torres Pazmino, D. E., Thallinger, G. G., Glieder, A.

Journal:

Year:

2012

Language:

english

File:

PDF, 679 KB

english, 2012

6

Tracking and coordinating an international curation effort for the CCDS Project

Harte, R. A., Farrell, C. M., Loveland, J. E., Suner, M.-M., Wilming, L., Aken, B., Barrell, D., Frankish, A., Wallin, C., Searle, S., Diekhans, M., Harrow, J., Pruitt, K. D.

Journal:

Year:

2012

Language:

english

File:

PDF, 759 KB

english, 2012

7

Tetrahymena genome database Wiki: a community-maintained model organism database

Stover, N. A., Punia, R. S., Bowen, M. S., Dolins, S. B., Clark, T. G.

Journal:

Year:

2012

Language:

english

File:

PDF, 1.05 MB

english, 2012

8

Towards semi-automated curation: using text mining to recreate the HIV-1, human protein interaction database

Jamieson, D. G., Gerner, M., Sarafraz, F., Nenadic, G., Robertson, D. L.

Journal:

Year:

2012

Language:

english

File:

PDF, 476 KB

english, 2012

9

Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation

Burge, S., Kelly, E., Lonsdale, D., Mutowo-Muellenet, P., McAnulla, C., Mitchell, A., Sangrador-Vegas, A., Yong, S.-Y., Mulder, N., Hunter, S.

Journal:

Year:

2012

Language:

english

File:

PDF, 403 KB

english, 2012

10

Manual Gene Ontology annotation workflow at the Mouse Genome Informatics Database

Drabkin, H. J., Blake, J. A.

Journal:

Year:

2012

Language:

english

File:

PDF, 2.70 MB

english, 2012

11

Prioritizing PubMed articles for the Comparative Toxicogenomic Database utilizing semantic information

Kim, S., Kim, W., Wei, C.-H., Lu, Z., Wilbur, W. J.

Journal:

Year:

2012

Language:

english

File:

PDF, 128 KB

english, 2012

12

Collaborative biocuration--text-mining development task for document prioritization for curation

Wiegers, T. C., Davis, A. P., Mattingly, C. J.

Journal:

Year:

2012

Language:

english

File:

PDF, 3.40 MB

english, 2012

13

A hybrid human and machine resource curation pipeline for the Neuroscience Information Framework

Bandrowski, A. E., Cachat, J., Li, Y., Muller, H. M., Sternberg, P. W., Ciccarese, P., Clark, T., Marenco, L., Wang, R., Astakhov, V., Grethe, J. S., Martone, M. E.

Journal:

Year:

2012

Language:

english

File:

PDF, 591 KB

english, 2012

14

Text mining for the biocuration workflow

Hirschman, L., Burns, G. A. P. C., Krallinger, M., Arighi, C., Cohen, K. B., Valencia, A., Wu, C. H., Chatr-Aryamontri, A., Dowell, K. G., Huala, E., Lourenco, A., Nash, R., Veuthey, A.-L., Wiegers, T

Journal:

Year:

2012

Language:

english

File:

PDF, 306 KB

english, 2012

15

Biocuration workflows and text mining: overview of the BioCreative 2012 Workshop Track II

Lu, Z., Hirschman, L.

Journal:

Year:

2012

Language:

english

File:

PDF, 87 KB

english, 2012

16

Developing a biocuration workflow for AgBase, a non-model organism database

Pillai, L., Chouvarine, P., Tudor, C. O., Schmidt, C. J., Vijay-Shanker, K., McCarthy, F. M.

Journal:

Year:

2012

Language:

english

File:

PDF, 610 KB

english, 2012

17

CPPsite: a curated database of cell penetrating peptides

Gautam, A., Singh, H., Tyagi, A., Chaudhary, K., Kumar, R., Kapoor, P., Raghava, G. P. S.

Journal:

Year:

2012

Language:

english

File:

PDF, 583 KB

english, 2012

18

The PRINTS database: a fine-grained protein sequence annotation and analysis resource--its status in 2012

Attwood, T. K., Coletta, A., Muirhead, G., Pavlopoulou, A., Philippou, P. B., Popov, I., Roma-Mateo, C., Theodosiou, A., Mitchell, A. L.

Journal:

Year:

2012

Language:

english

File:

PDF, 1.24 MB

english, 2012

19

AntiFam: a tool to help identify spurious ORFs in protein annotation

Eberhardt, R. Y., Haft, D. H., Punta, M., Martin, M., O'Donovan, C., Bateman, A.

Journal:

Year:

2012

Language:

english

File:

PDF, 357 KB

english, 2012

20

The eFIP system for text mining of protein interaction networks of phosphorylated proteins

Tudor, C. O., Arighi, C. N., Wang, Q., Wu, C. H., Vijay-Shanker, K.

Journal:

Year:

2012

Language:

english

File:

PDF, 814 KB

english, 2012

21

PRIDE: Quality control in a proteomics data repository

Csordas, A., Ovelleiro, D., Wang, R., Foster, J. M., Rios, D., Vizcaino, J. A., Hermjakob, H.

Journal:

Year:

2012

Language:

english

File:

PDF, 841 KB

english, 2012

22

dbPTB: a database for preterm birth

Uzun, A., Laliberte, A., Parker, J., Andrew, C., Winterrowd, E., Sharma, S., Istrail, S., Padbury, J. F.

Journal:

Year:

2012

Language:

english

File:

PDF, 374 KB

english, 2012

23

Dr. PIAS 2.0: an update of a database of predicted druggable protein-protein interactions

Sugaya, N., Kanai, S., Furuya, T.

Journal:

Year:

2012

Language:

english

File:

PDF, 262 KB

english, 2012

24

Considerations for creating and annotating the budding yeast Genome Map at SGD: a progress report

Chan, E. T., Cherry, J. M.

Journal:

Year:

2012

Language:

english

File:

PDF, 695 KB

english, 2012

25

CreZOO--the European virtual repository of Cre and other targeted conditional driver strains

Chandras, C., Zouberakis, M., Salimova, E., Smedley, D., Rosenthal, N., Aidinis, V.

Journal:

Year:

2012

Language:

english

File:

PDF, 76 KB

english, 2012

26

Biocuration Virtual Issue 2012

Gaudet, P., Mazumder, R.

Journal:

Year:

2012

Language:

english

File:

PDF, 36 KB

english, 2012

27

The importance of identifying alternative splicing in vertebrate genome annotation

Frankish, A., Mudge, J. M., Thomas, M., Harrow, J.

Journal:

Year:

2012

Language:

english

File:

PDF, 1.14 MB

english, 2012

28

MEDIC: a practical disease vocabulary used at the Comparative Toxicogenomics Database

Davis, A. P., Wiegers, T. C., Rosenstein, M. C., Mattingly, C. J.

Journal:

Year:

2012

Language:

english

File:

PDF, 1.24 MB

english, 2012

29

YeastMine--an integrated data warehouse for Saccharomyces cerevisiae data as a multipurpose tool-kit

Balakrishnan, R., Park, J., Karra, K., Hitz, B. C., Binkley, G., Hong, E. L., Sullivan, J., Micklem, G., Michael Cherry, J.

Journal:

Year:

2012

Language:

english

File:

PDF, 474 KB

english, 2012

30

Recent advances in biocuration: Meeting Report from the fifth International Biocuration Conference

Gaudet, P., Arighi, C., Bastian, F., Bateman, A., Blake, J. A., Cherry, M. J., D'Eustachio, P., Finn, R., Giglio, M., Hirschman, L., Kania, R., Klimke, W., Martin, M. J., Karsch-Mizrachi, I., Munoz-To

Journal:

Year:

2012

Language:

english

File:

PDF, 88 KB

english, 2012

31

ASGARD: an open-access database of annotated transcriptomes for emerging model arthropod species

Zeng, V., Extavour, C. G.

Journal:

Year:

2012

Language:

english

File:

PDF, 2.63 MB

english, 2012

32

BioCreative-2012 Virtual Issue

Wu, C. H., Arighi, C. N., Cohen, K. B., Hirschman, L., Krallinger, M., Lu, Z., Mattingly, C., Valencia, A., Wiegers, T. C., John Wilbur, W.

Journal:

Year:

2012

Language:

english

File:

PDF, 61 KB

english, 2012

33

Building a biomedical semantic network in Wikipedia with Semantic Wiki Links

Good, B. M., Clarke, E. L., Loguercio, S., Su, A. I.

Journal:

Year:

2012

Language:

english

File:

PDF, 738 KB

english, 2012

34

Annotation of functional sites with the Conserved Domain Database

Derbyshire, M. K., Lanczycki, C. J., Bryant, S. H., Marchler-Bauer, A.

Journal:

Year:

2012

Language:

english

File:

PDF, 372 KB

english, 2012

35

The mouse-human anatomy ontology mapping project

Hayamizu, T. F., de Coronado, S., Fragoso, G., Sioutos, N., Kadin, J. A., Ringwald, M.

Journal:

Year:

2012

Language:

english

File:

PDF, 714 KB

english, 2012

36

Aptamer base: a collaborative knowledge base to describe aptamers and SELEX experiments

Cruz-Toledo, J., McKeague, M., Zhang, X., Giamberardino, A., McConnell, E., Francis, T., DeRosa, M. C., Dumontier, M.

Journal:

Year:

2012

Language:

english

File:

PDF, 525 KB

english, 2012

37

The Biofuel Feedstock Genomics Resource: a web-based portal and database to enable functional genomics of plant biofuel feedstock species

Childs, K. L., Konganti, K., Buell, C. R.

Journal:

Year:

2012

Language:

english

File:

PDF, 259 KB

english, 2012

38

ScreenTroll: a searchable database to compare genome-wide yeast screens

Thorpe, P. H., Dittmar, J. C., Rothstein, R.

Journal:

Year:

2012

Language:

english

File:

PDF, 530 KB

english, 2012

39

Community annotation and bioinformatics workforce development in concert--Little Skate Genome Annotation Workshops and Jamborees

Wang, Q., Arighi, C. N., King, B. L., Polson, S. W., Vincent, J., Chen, C., Huang, H., Kingham, B. F., Page, S. T., Farnum Rendino, M., Thomas, W. K., Udwary, D. W., Wu, C. H.

Journal:

Year:

2012

Language:

english

File:

PDF, 604 KB

english, 2012

40

Ontology searching and browsing at the Rat Genome Database

Laulederkind, S. J. F., Tutaj, M., Shimoyama, M., Hayman, G. T., Lowry, T. F., Nigam, R., Petri, V., Smith, J. R., Wang, S.-J., de Pons, J., Dwinell, M. R., Jacob, H. J.

Journal:

Year:

2012

Language:

english

File:

PDF, 1.65 MB

english, 2012

41

DFVF: database of fungal virulence factors

Lu, T., Yao, B., Zhang, C.

Journal:

Year:

2012

Language:

english

File:

PDF, 470 KB

english, 2012

42

Text mining in the biocuration workflow: applications for literature curation at WormBase, dictyBase and TAIR

Van Auken, K., Fey, P., Berardini, T. Z., Dodson, R., Cooper, L., Li, D., Chan, J., Li, Y., Basu, S., Muller, H.-M., Chisholm, R., Huala, E., Sternberg, P. W.

Journal:

Year:

2012

Language:

english

File:

PDF, 584 KB

english, 2012

43

Opportunities for text mining in the FlyBase genetic literature curation workflow

Journal:

Year:

2012

Language:

english

File:

PDF, 1019 KB

english, 2012

44

Biocurators and Biocuration: surveying the 21st century challenges

Burge, S., Attwood, T. K., Bateman, A., Berardini, T. Z., Cherry, M., O'Donovan, C., Xenarios, l., Gaudet, P.

Journal:

Year:

2012

Language:

english

File:

PDF, 174 KB

english, 2012

45

Building an efficient curation workflow for the Arabidopsis literature corpus

Li, D., Berardini, T. Z., Muller, R. J., Huala, E.

Journal:

Year:

2012

Language:

english

File:

PDF, 1.13 MB

english, 2012

46

CvManGO, a method for leveraging computational predictions to improve literature-based Gene Ontology annotations

Park, J., Costanzo, M. C., Balakrishnan, R., Cherry, J. M., Hong, E. L.

Journal:

Year:

2012

Language:

english

File:

PDF, 440 KB

english, 2012

47

Argo: an integrative, interactive, text mining-based workbench supporting curation

Rak, R., Rowley, A., Black, W., Ananiadou, S.

Journal:

Year:

2012

Language:

english

File:

PDF, 596 KB

english, 2012

48

Community gene annotation in practice

Loveland, J. E., Gilbert, J. G. R., Griffiths, E., Harrow, J. L.

Journal:

Year:

2012

Language:

english

File:

PDF, 638 KB

english, 2012

49

How to link ontologies and protein-protein interactions to literature: text-mining approaches and the BioCreative experience

Krallinger, M., Leitner, F., Vazquez, M., Salgado, D., Marcelle, C., Tyers, M., Valencia, A., Chatr-aryamontri, A.

Journal:

Year:

2012

Language:

english

File:

PDF, 1.76 MB

english, 2012

50

Strategies for annotation and curation of translational databases: the eTUMOUR project

Julia-Sape, M., Lurgi, M., Mier, M., Estanyol, F., Rafael, X., Candiota, A. P., Barcelo, A., Garcia, A., Martinez-Bisbal, M. C., Ferrer-Luna, R., Moreno-Torres, A., Celda, B., Arus, C.

Journal:

Year:

2012

Language:

english

File:

PDF, 1.30 MB

english, 2012

51

GrameneMart: the BioMart data portal for the Gramene project

Spooner, W., Youens-Clark, K., Staines, D., Ware, D.

Journal:

Year:

2012

Language:

english

File:

PDF, 103 KB

english, 2012

52

RNAiAtlas: a database for RNAi (siRNA) libraries and their specificity

Mazur, S., Csucs, G., Kozak, K.

Journal:

Year:

2012

Language:

english

File:

PDF, 627 KB

english, 2012

53

Phenol-Explorer 2.0: a major update of the Phenol-Explorer database integrating data on polyphenol metabolism and pharmacokinetics in humans and experimental animals

Rothwell, J. A., Urpi-Sarda, M., Boto-Ordonez, M., Knox, C., Llorach, R., Eisner, R., Cruz, J., Neveu, V., Wishart, D., Manach, C., Andres-Lacueva, C., Scalbert, A.

Journal:

Year:

2012

Language:

english

File:

PDF, 750 KB

english, 2012

54

MSV3d: database of human MisSense variants mapped to 3D protein structure

Luu, T.-D., Rusu, A.-M., Walter, V., Ripp, R., Moulinier, L., Muller, J., Toursel, T., Thompson, J. D., Poch, O., Nguyen, H.

Journal:

Year:

2012

Language:

english

File:

PDF, 581 KB

english, 2012

55

HAltORF: a database of predicted out-of-frame alternative open reading frames in human

Vanderperre, B., Lucier, J.-F., Roucou, X.

Journal:

Year:

2012

Language:

english

File:

PDF, 360 KB

english, 2012

56

The curation paradigm and application tool used for manual curation of the scientific literature at the Comparative Toxicogenomics Database

Journal:

Year:

2012

Language:

english

File:

PDF, 31 KB

english, 2012

57

Enhancing a Pathway-Genome Database (PGDB) to capture subcellular localization of metabolites and enzymes: the nucleotide-sugar biosynthetic pathways of Populus trichocarpa

Nag, A., Karpinets, T. V., Chang, C. H., Bar-Peled, M.

Journal:

Year:

2012

Language:

english

File:

PDF, 949 KB

english, 2012

58

The Units Ontology: a tool for integrating units of measurement in science

Gkoutos, G. V., Schofield, P. N., Hoehndorf, R.

Journal:

Year:

2012

Language:

english

File:

PDF, 147 KB

english, 2012

59

Using ODIN for a PharmGKB revalidation experiment

Rinaldi, F., Clematide, S., Garten, Y., Whirl-Carrillo, M., Gong, L., Hebert, J. M., Sangkuhl, K., Thorn, C. F., Klein, T. E., Altman, R. B.

Journal:

Year:

2012

Language:

english

File:

PDF, 1.32 MB

english, 2012

To build up a library is to create a life. It’s never just a random collection of books.

— Carlos María Domínguez

Official channel

Z-Library Desktop Launcher

Tor version

Z-Library

Z-Library Since 2009 support@z-lib.do

EnglishРусскийEspañolItalianoελληνικάاللغة العربيةBahasa IndonesiaBahasa Malaysiaहिन्दीDeutschFrançaisPortuguêsУкраїнськаPolski中文繁體中文日本語Tiếng ViệtAzərbaycan DiliՀայոց լեզուภาษาไทยTürk Diliქართველიবাংলাپښتوతెలుగుاردو한국어SrpskiБългарски