Volume 2; Issue 1

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Animal Microbiome
Volume 2; Issue 1

Animal Microbiome

Volume 2; Issue 1

1

Impact of coccidiostat and phytase supplementation on gut microbiota composition and phytate degradation in broiler chickens

Künzel, Susanne, Borda-Molina, Daniel, Kraft, Rebecca, Sommerfeld, Vera, Kühn, Imke, Camarinha-Silva, Amélia, Rodehutscord, Markus

Journal:

Animal Microbiome

Year:

2019

Language:

english

File:

PDF, 922 KB

english, 2019

2

Variation in gut bacterial composition is associated with Haemonchus contortus parasite infection of sheep

Mamun, Md. Abdullah Al, Sandeman, Mark, Rayment, Phil, Brook-Carter, Phillip, Scholes, Emily, Kasinadhuni, Naga, Piedrafita, David, Greenhill, Andrew R.

Journal:

Animal Microbiome

Year:

2020

File:

PDF, 2.38 MB

2020

3

Parrotfish predation drives distinct microbial communities in reef-building corals

Ezzat, LeÃ¯la, Lamy, Thomas, Maher, Rebecca L., Munsterman, Katrina S., Landfield, Kaitlyn M., Schmeltzer, Emily R., Clements, Cody S., Vega Thurber, Rebecca L., Burkepile, Deron E.

Journal:

Animal Microbiome

Year:

2020

File:

PDF, 5.51 MB

2020

4

Late weaning is associated with increased microbial diversity and Faecalibacterium prausnitzii abundance in the fecal microbiota of piglets

Massacci, Francesca Romana, Berri, Mustapha, Lemonnier, Gaetan, Guettier, Elodie, Blanc, Fany, Jardet, Deborah, Rossignol, Marie Noelle, Mercat, Marie-JosÃ©, DorÃ©, JoÃ«l, Lepage, Patricia, Rogel-Gail

Journal:

Animal Microbiome

Year:

2020

Language:

english

File:

PDF, 1.18 MB

english, 2020

5

Multi-kingdom characterization of the core equine fecal microbiota based on multiple equine (sub)species

Edwards, J. E., Shetty, S. A., van den Berg, P., Burden, F., van Doorn, D. A., Pellikaan, W. F., Dijkstra, J., Smidt, H.

Journal:

Animal Microbiome

Year:

2020

File:

PDF, 3.20 MB

2020

6

Metagenomic analysis suggests broad metabolic potential in extracellular symbionts of the bivalve Thyasira cf. gouldi

McCuaig, Bonita, PeÃ±a-Castillo, Lourdes, Dufour, Suzanne C.

Journal:

Animal Microbiome

Year:

2020

File:

PDF, 842 KB

2020

7

Antibiotic resistance gene sharing networks and the effect of dietary nutritional content on the canine and feline gut resistome

Kim, Younjung, Leung, Marcus H. Y., Kwok, Wendy, FourniÃ©, Guillaume, Li, Jun, Lee, Patrick K. H., Pfeiffer, Dirk U.

Journal:

Animal Microbiome

Year:

2020

File:

PDF, 2.15 MB

2020

8

Cloacal swabs and alcohol bird specimens are good proxies for compositional analyses of gut microbial communities of Great tits (Parus major)

Bodawatta, Kasun H., Puzejova, Katerina, Sam, Katerina, Poulsen, Michael, JÃ¸nsson, Knud A.

Journal:

Animal Microbiome

Year:

2020

File:

PDF, 3.15 MB

2020

9

Domesticated equine species and their derived hybrids differ in their fecal microbiota

Edwards, J. E., Schennink, A., Burden, F., Long, S., van Doorn, D. A., Pellikaan, W. F., Dijkstra, J., Saccenti, E., Smidt, H.

Journal:

Animal Microbiome

Year:

2020

File:

PDF, 1.07 MB

2020

10

Gut eukaryotic communities in pigs: diversity, composition and host genetics contribution

Ramayo-Caldas, Yuliaxis, Prenafeta-BoldÃº, Francesc, Zingaretti, Laura M., Gonzalez-Rodriguez, Olga, Dalmau, Antoni, Quintanilla, Raquel, Ballester, Maria

Journal:

Animal Microbiome

Year:

2020

File:

PDF, 12.80 MB

2020

11

Composition and co-occurrence patterns of the microbiota of different niches of the bovine mammary gland: potential associations with mastitis susceptibility, udder inflammation, and teat-end hyperkeratosis

Derakhshani, Hooman, Plaizier, Jan C., De Buck, Jeroen, Barkema, Herman W., Khafipour, Ehsan

Journal:

Animal Microbiome

Year:

2020

File:

PDF, 3.85 MB

2020

12

Microbiota characterization of Exaiptasia diaphana from the Great Barrier Reef

Hartman, Leon Michael, van Oppen, Madeleine Josephine Henriette, Blackall, Linda Louise

Journal:

Animal Microbiome

Year:

2020

File:

PDF, 1.02 MB

2020

13

Evaluation of fecal Lactobacillus populations in dogs with idiopathic epilepsy: a pilot study

MuÃ±ana, Karen R., Jacob, Megan E., Callahan, Benjamin J.

Journal:

Animal Microbiome

Year:

2020

File:

PDF, 867 KB

2020

14

Wild primate microbiomes prevent weight gain in germ-free mice

Sidiropoulos, Dimitrios N., Al-Ghalith, Gabriel A., Shields-Cutler, Robin R., Ward, Tonya L., Johnson, Abigail J., Vangay, Pajau, Knights, Dan, Kashyap, Purna C., Xian, Yibo, Ramer-Tait, Amanda E., Cl

Journal:

Animal Microbiome

Year:

2020

File:

PDF, 1.60 MB

2020

15

Oyster hemolymph is a complex and dynamic ecosystem hosting bacteria, protists and viruses

Dupont, S., Lokmer, A., Corre, E., Auguet, J.-C., Petton, B., Toulza, E., Montagnani, C., Tanguy, G., Pecqueur, D., Salmeron, C., Guillou, L., Desnues, C., La Scola, B., Bou Khalil, J., de Lorgeril, J

Journal:

Animal Microbiome

Year:

2020

File:

PDF, 2.77 MB

2020

16

Microbial symbiosis and coevolution of an entire clade of ancient vertebrates: the gut microbiota of sea turtles and its relationship to their phylogenetic history

Scheelings, Titus Franciscus, Moore, Robert J., Van, Thi Thu Hao, Klaassen, Marcel, Reina, Richard D.

Journal:

Animal Microbiome

Year:

2020

File:

PDF, 1.37 MB

2020

17

Putative modulation of the gut microbiome by probiotics enhances preference for novelty in a preliminary double-blind placebo-controlled study in ferrets

Dugyala, Supritha, Ptacek, Travis S., Simon, Jeremy M., Li, Yuhui, FrÃ¶hlich, Flavio

Journal:

Animal Microbiome

Year:

2020

File:

PDF, 1.06 MB

2020

18

Microbiomeâhost co-oscillation patterns in remodeling of colonic homeostasis during adaptation to a high-grain diet in a sheep model

Lin, Limei, Wang, Yue, Xu, Lei, Liu, Junhua, Zhu, Weiyun, Mao, Shengyong

Journal:

Animal Microbiome

Year:

2020

File:

PDF, 2.07 MB

2020

19

The gut microbiome and its potential role in paradoxical anaerobism in pupfishes of the Mojave Desert

Bhute, Shrikant S., Escobedo, Brisa, Haider, Mina, Mekonen, Yididya, Ferrer, Dafhney, Hillyard, Stanley D., Friel, Ariel D., van Breukelen, Frank, Hedlund, Brian P.

Journal:

Animal Microbiome

Year:

2020

File:

PDF, 1.55 MB

2020

20

Does solar irradiation drive community assembly of vulture plumage microbiotas?

Graves, Gary R., Matterson, Kenan O., Milensky, Christopher M., Schmidt, Brian K., OâMahoney, Michael J. V., Drovetski, Sergei V.

Journal:

Animal Microbiome

Year:

2020

File:

PDF, 2.15 MB

2020

21

Effect of Cyberlindnera jadinii yeast as a protein source on intestinal microbiota and butyrate levels in post-weaning piglets

Iakhno, Stanislav, Umu, ÃzgÃ¼n C. O., HÃ¥kenÃ¥sen, Ingrid M., Ãkesson, Caroline P., Mydland, Liv T., Press, Charles McL., SÃ¸rum, Henning, Ãverland, Margareth

Journal:

Animal Microbiome

Year:

2020

File:

PDF, 1.16 MB

2020

22

Survey of rumen microbiota of domestic grazing yak during different growth stages revealed novel maturation patterns of four key microbial groups and their dynamic interactions

Guo, Wei, Zhou, Mi, Ma, Tao, Bi, Sisi, Wang, Weiwei, Zhang, Ying, Huang, Xiaodan, Guan, Le Luo, Long, Ruijun

Journal:

Animal Microbiome

Year:

2020

File:

PDF, 2.13 MB

2020

23

The fecal microbiota of wild and captive raptors

Oliveira, Bruno C. M., Murray, Maureen, Tseng, Florina, Widmer, Giovanni

Journal:

Animal Microbiome

Year:

2020

File:

PDF, 794 KB

2020

24

Seasonal dynamics and starvation impact on the gut microbiome of urochordate ascidian Halocynthia roretzi

Wei, Jiankai, Gao, Hongwei, Yang, Yang, Liu, Haiming, Yu, Haiyan, Chen, Zigui, Dong, Bo

Journal:

Animal Microbiome

Year:

2020

File:

PDF, 5.25 MB

2020

25

Microbial environment shapes immune function and cloacal microbiota dynamics in zebra finches Taeniopygia guttata

van Veelen, H. Pieter J., FalcÃ£o Salles, Joana, Matson, Kevin D., van der Velde, Marco, Tieleman, B. Irene

Journal:

Animal Microbiome

Year:

2020

File:

PDF, 2.92 MB

2020

26

The microbiome of captive hamadryas baboons

Li, Xuanji, Trivedi, Urvish, Brejnrod, Asker Daniel, Vestergaard, Gisle, Mortensen, Martin Steen, Bertelsen, Mads Frost, SÃ¸rensen, SÃ¸ren Johannes

Journal:

Animal Microbiome

Year:

2020

File:

PDF, 2.15 MB

2020

27

An observational field study of the cloacal microbiota in adult laying hens with and without access to an outdoor range

Schreuder, Janneke, Velkers, Francisca C., Bouwstra, Ruth J., Beerens, Nancy, Stegeman, J. Arjan, de Boer, Willem F., van Hooft, P., Elbers, Armin R. W., Bossers, Alex, Jurburg, Stephanie D.

Journal:

Animal Microbiome

Year:

2020

File:

PDF, 843 KB

2020

28

Influences of claywater and greenwater on the skin microbiome of cultured larval sablefish (Anoplopoma fimbria)

Dodd, Emily T., Pierce, Melissa L., Lee, Jonathan S. F., Poretsky, Rachel S.

Journal:

Animal Microbiome

Year:

2020

File:

PDF, 1.31 MB

2020

29

Antibiotic-induced alterations and repopulation dynamics of yellowtail kingfish microbiota

Legrand, Thibault P. R. A., Catalano, Sarah R., Wos-Oxley, Melissa L., Wynne, James W., Weyrich, Laura S., Oxley, Andrew P. A.

Journal:

Animal Microbiome

Year:

2020

File:

PDF, 1.72 MB

2020

30

Microbiome of the Southwestern Atlantic invasive scleractinian coral, Tubastraea tagusensis

Zanotti, Aline Aparecida, Gregoracci, Gustavo Bueno, Capel, Katia Cristina Cruz, Kitahara, Marcelo Visentini

Journal:

Animal Microbiome

Year:

2020

File:

PDF, 1.04 MB

2020

31

Diet-induced changes in bacterial communities in the jejunum and their associations with bile acids in Angus beef cattle

Liu, Jianan, Liu, Fang, Cai, Wentao, Jia, Cunling, Bai, Ying, He, Yanghua, Zhu, Weiyun, Li, Robert W., Song, Jiuzhou

Journal:

Animal Microbiome

Year:

2020

File:

PDF, 2.09 MB

2020

32

The microbiota of the surface, dermis and subcutaneous tissue of dog skin

GarcÃa-Fonticoba, RocÃo, Ferrer, LluÃs, Francino, Olga, CuscÃ³, Anna

Journal:

Animal Microbiome

Year:

2020

File:

PDF, 1.24 MB

2020

33

Maternal influences on oral and faecal microbiota maturation in neonatal calves in beef and dairy production systems

Barden, Matthew, Richards-Rios, Peter, Ganda, Erika, Lenzi, Luca, Eccles, Richard, Neary, Joseph, Oultram, Joanne, Oikonomou, Georgios

Journal:

Animal Microbiome

Year:

2020

File:

PDF, 2.05 MB

2020

34

Bugs and drugs: a systems biology approach to characterising the effect of moxidectin on the horseâs faecal microbiome

Daniels, S. P., Leng, J., Swann, J. R., Proudman, C. J.

Journal:

Animal Microbiome

Year:

2020

File:

PDF, 1.27 MB

2020

35

Recovery and resiliency of skin microbial communities on the southern leopard frog (Lithobates sphenocephalus) following two biotic disturbances

Weeks, Denita M., Parris, Matthew J., Brown, Shawn P.

Journal:

Animal Microbiome

Year:

2020

File:

PDF, 3.21 MB

2020

36

Microbiomes of a specialist caterpillar are consistent across different habitats but also resemble the local soil microbial communities

Gomes, Sofia I. F., Kielak, Anna M., Hannula, S. Emilia, Heinen, Robin, Jongen, Renske, Keesmaat, Ivor, De Long, Jonathan R., Bezemer, T. Martijn

Journal:

Animal Microbiome

Year:

2020

File:

PDF, 2.22 MB

2020

37

Skin microbiome of beluga whales: spatial, temporal, and health-related dynamics

Van Cise, Amy M., Wade, Paul R., Goertz, Caroline E. C., Burek-Huntington, Kathy, Parsons, Kim M., Clauss, Tonya, Hobbs, Roderick C., Apprill, Amy

Journal:

Animal Microbiome

Year:

2020

File:

PDF, 1.21 MB

2020

38

Temporal dynamics of the fecal microbiota in veal calves in a 6-month field trial

Massot, MÃ©ril, Haenni, Marisa, Nguyen, Thu Thuy, Madec, Jean-Yves, MentrÃ©, France, Denamur, Erick

Journal:

Animal Microbiome

Year:

2020

File:

PDF, 2.83 MB

2020

39

Microbial co-occurrence networks of gut microbiota reveal community conservation and diet-associated shifts in cichlid fishes

Riera, Joan LluÃs, Baldo, Laura

Journal:

Animal Microbiome

Year:

2020

File:

PDF, 5.12 MB

2020

40

Parasite-host ecology: the limited impacts of an intimate enemy on host microbiomes

Clements, Cody S., Burns, Andrew S., Stewart, Frank J., Hay, Mark E.

Journal:

Animal Microbiome

Year:

2020

File:

PDF, 1.89 MB

2020

41

Breeding farm, level of feeding and presence of antibiotics in the feed influence rabbit cecal microbiota

Velasco-Galilea, MarÃa, Guivernau, Miriam, Piles, Miriam, ViÃ±as, Marc, Rafel, Oriol, SÃ¡nchez, Armand, Ramayo-Caldas, Yuliaxis, GonzÃ¡lez-RodrÃguez, Olga, SÃ¡nchez, Juan P.

Journal:

Animal Microbiome

Year:

2020

File:

PDF, 2.42 MB

2020

42

Characterizing the cirri and gut microbiomes of the intertidal barnacle Semibalanus balanoides

Brown, Bianca R. P., Nunez, Joaquin C. B., Rand, David M.

Journal:

Animal Microbiome

Year:

2020

File:

PDF, 3.57 MB

2020

43

Development of the equine hindgut microbiome in semi-feral and domestic conventionally-managed foals

Tavenner, Meredith K., McDonnell, Sue M., Biddle, Amy S.

Journal:

Animal Microbiome

Year:

2020

File:

PDF, 2.35 MB

2020