Discrete Applied Mathematics

1

On optimization, dynamics and uncertainty: A tutorial for gene-environment networks

G.-W. Weber, Ö. Uğur, P. Taylan, A. Tezel

Journal:

Year:

2009

Language:

english

File:

PDF, 1.04 MB

english, 2009

2

Phylogenetic graph models beyond trees

Ulrik Brandes, Sabine Cornelsen

Journal:

Discrete Applied Mathematics

Year:

2009

Language:

english

File:

PDF, 1005 KB

english, 2009

3

A refinement of the common cause principle

Nihat Ay

Journal:

Discrete Applied Mathematics

Year:

2009

Language:

english

File:

PDF, 1.28 MB

english, 2009

4

Graph spectra as a systematic tool in computational biology

Anirban Banerjee, Jürgen Jost

Journal:

Discrete Applied Mathematics

Year:

2009

Language:

english

File:

PDF, 563 KB

english, 2009

5

Integration of topological measures for eliminating non-specific interactions in protein interaction networks

Murat Ali Bayir, Tacettin Dogacan Guney, Tolga Can

Journal:

Discrete Applied Mathematics

Year:

2009

Language:

english

File:

PDF, 1.59 MB

english, 2009

6

Path finding approaches and metabolic pathways

F.J. Planes, J.E. Beasley

Journal:

Discrete Applied Mathematics

Year:

2009

Language:

english

File:

PDF, 789 KB

english, 2009

7

Inference of an oscillating model for the yeast cell cycle

Nicole Radde, Lars Kaderali

Journal:

Discrete Applied Mathematics

Year:

2009

Language:

english

File:

PDF, 1.30 MB

english, 2009

8

The Asian contribution to the Turkish population with respect to the Balkans: Y-chromosome perspective

Ceren Caner Berkman, İnci Togan

Journal:

Discrete Applied Mathematics

Year:

2009

Language:

english

File:

PDF, 547 KB

english, 2009

9

Consistency of the QNet algorithm for generating planar split networks from weighted quartets

S. Grünewald, V. Moulton, A. Spillner

Journal:

Discrete Applied Mathematics

Year:

2009

Language:

english

File:

PDF, 830 KB

english, 2009

10

A new constraint-based description of the steady-state flux cone of metabolic networks

Abdelhalim Larhlimi, Alexander Bockmayr

Journal:

Discrete Applied Mathematics

Year:

2009

Language:

english

File:

PDF, 655 KB

english, 2009

11

Split decomposition over an abelian group, Part 2: Group-valued split systems with weakly compatible support

Andreas Dress

Journal:

Discrete Applied Mathematics

Year:

2009

Language:

english

File:

PDF, 801 KB

english, 2009

12

Discovering cis-regulatory modules by optimizing barbecues

Axel Mosig, Türker Bıyıkoğlu, Sonja J. Prohaska, Peter F. Stadler

Journal:

Discrete Applied Mathematics

Year:

2009

Language:

english

File:

PDF, 900 KB

english, 2009

13

Pattern analysis for the prediction of fungal pro-peptide cleavage sites

S. Özöğür-Akyüz, J. Shawe-Taylor, G.-W. Weber, Z.B. Ögel

Journal:

Discrete Applied Mathematics

Year:

2009

Language:

english

File:

PDF, 551 KB

english, 2009

14

A mathematical program to refine gene regulatory networks

Guglielmo Lulli, Martin Romauch

Journal:

Discrete Applied Mathematics

Year:

2009

Language:

english

File:

PDF, 922 KB

english, 2009

15

Whole-genome prokaryotic clustering based on gene lengths

A. Bolshoy, Z. Volkovich

Journal:

Discrete Applied Mathematics

Year:

2009

Language:

english

File:

PDF, 869 KB

english, 2009

16

Parametric modeling of protein–DNA binding kinetics: A discrete event based simulation approach

Preetam Ghosh, Samik Ghosh, Kalyan Basu, Sajal Das

Journal:

Discrete Applied Mathematics

Year:

2009

Language:

english

File:

PDF, 3.39 MB

english, 2009

17

A note on fundamental, non-fundamental, and robust cycle bases

Konstantin Klemm, Peter F. Stadler

Journal:

Discrete Applied Mathematics

Year:

2009

Language:

english

File:

PDF, 1.06 MB

english, 2009

18

Modeling and simulation of metabolic networks for estimation of biomass accumulation parameters

U. Kaplan, M. Türkay, L. Biegler, B. Karasözen

Journal:

Discrete Applied Mathematics

Year:

2009

Language:

english

File:

PDF, 940 KB

english, 2009

19

Prokaryote clustering based on DNA curvature distributions

L. Kozobay-Avraham, S. Hosid, Z. Volkovich, A. Bolshoy

Journal:

Discrete Applied Mathematics

Year:

2009

Language:

english

File:

PDF, 1.07 MB

english, 2009

20

Haplotype inferring via galled-tree networks using a hypergraph covering problem for special genotype matrices

Arvind Gupta, Ján Maňuch, Ladislav Stacho, Xiaohong Zhao

Journal:

Discrete Applied Mathematics

Year:

2009

Language:

english

File:

PDF, 1.18 MB

english, 2009

21

A scale-free graph model based on bipartite graphs

Etienne Birmelé

Journal:

Discrete Applied Mathematics

Year:

2009

Language:

english

File:

PDF, 1.05 MB

english, 2009

22

Modeling the process of human body iron homeostasis using a variant of timed Petri nets

Jacek Blazewicz, Dorota Formanowicz, Piotr Formanowicz, Andrea Sackmann, Michał Sajkowski

Journal:

Discrete Applied Mathematics

Year:

2009

Language:

english

File:

PDF, 915 KB

english, 2009

23

An introduction to the perplex number system

Jerry L.R. Chandler

Journal:

Discrete Applied Mathematics

Year:

2009

Language:

english

File:

PDF, 710 KB

english, 2009

24

Modeling and simulation of nitrogen regulation in Corynebacterium glutamicum

Jutta Gebert, Nicole Radde, Ulrich Faigle, Julia Strösser, Andreas Burkovski

Journal:

Discrete Applied Mathematics

Year:

2009

Language:

english

File:

PDF, 971 KB

english, 2009

25

Genetic relationship between Kangal, Akbash and other dog populations

Evren Koban, Çiğdem Gökçek Saraç, Sinan Can Açan, Peter Savolainen, İnci Togan

Journal:

Discrete Applied Mathematics

Year:

2009

Language:

english

File:

PDF, 808 KB

english, 2009

27

Preface

Andreas Dress, Bülent Karasözen, Peter F. Stadler, Gerhard-Wilhelm Weber

Journal:

Discrete Applied Mathematics

Year:

2009

Language:

english

File:

PDF, 217 KB

english, 2009

Volume 157; Issue 10

On optimization, dynamics and uncertainty: A tutorial for gene-environment networks

Phylogenetic graph models beyond trees

A refinement of the common cause principle

Graph spectra as a systematic tool in computational biology

Integration of topological measures for eliminating non-specific interactions in protein interaction networks

Path finding approaches and metabolic pathways

Inference of an oscillating model for the yeast cell cycle

The Asian contribution to the Turkish population with respect to the Balkans: Y-chromosome perspective

Consistency of the QNet algorithm for generating planar split networks from weighted quartets

A new constraint-based description of the steady-state flux cone of metabolic networks

Split decomposition over an abelian group, Part 2: Group-valued split systems with weakly compatible support

Discovering cis-regulatory modules by optimizing barbecues

Pattern analysis for the prediction of fungal pro-peptide cleavage sites

A mathematical program to refine gene regulatory networks

Whole-genome prokaryotic clustering based on gene lengths

Parametric modeling of protein–DNA binding kinetics: A discrete event based simulation approach

A note on fundamental, non-fundamental, and robust cycle bases

Modeling and simulation of metabolic networks for estimation of biomass accumulation parameters

Prokaryote clustering based on DNA curvature distributions

Haplotype inferring via galled-tree networks using a hypergraph covering problem for special genotype matrices

A scale-free graph model based on bipartite graphs

Modeling the process of human body iron homeostasis using a variant of timed Petri nets

An introduction to the perplex number system

Modeling and simulation of nitrogen regulation in Corynebacterium glutamicum

Contents

Genetic relationship between Kangal, Akbash and other dog populations

Preface