Volume 16; Issue 9

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Environmental Microbiology
Volume 16; Issue 9

Environmental Microbiology

Volume 16; Issue 9

1

Complete genome of a new Firmicutes species belonging to the dominant human colonic microbiota (‘ Ruminococcus bicirculans ’) reveals two chromosomes and a selective capacity to utilize plant glucans

Wegmann, Udo, Louis, Petra, Goesmann, Alexander, Henrissat, Bernard, Duncan, Sylvia H., Flint, Harry J.

Journal:

Environmental Microbiology

Year:

2014

Language:

english

File:

PDF, 755 KB

english, 2014

2

Metagenomic 16S rDNA Illumina tags are a powerful alternative to amplicon sequencing to explore diversity and structure of microbial communities

Logares, Ramiro, Sunagawa, Shinichi, Salazar, Guillem, Cornejo-Castillo, Francisco M., Ferrera, Isabel, Sarmento, Hugo, Hingamp, Pascal, Ogata, Hiroyuki, de Vargas, Colomban, Lima-Mendez, Gipsi, Raes,

Journal:

Environmental Microbiology

Year:

2014

Language:

english

File:

PDF, 1.36 MB

english, 2014

3

Distinct dissolved organic matter sources induce rapid transcriptional responses in coexisting populations of Prochlorococcus , Pelagibacter and the OM60 clade

Sharma, Adrian K., Becker, Jamie W., Ottesen, Elizabeth A., Bryant, Jessica A., Duhamel, Solange, Karl, David M., Cordero, Otto X., Repeta, Daniel J., DeLong, Edward F.

Journal:

Environmental Microbiology

Year:

2014

Language:

english

File:

PDF, 1.49 MB

english, 2014

4

Vertical mother-neonate transfer of maternal gut bacteria via breastfeeding

Jost, Ted, Lacroix, Christophe, Braegger, Christian P., Rochat, Florence, Chassard, Christophe

Journal:

Environmental Microbiology

Year:

2014

Language:

english

File:

PDF, 953 KB

english, 2014

5

Microbial community structure and functioning in marine sediments associated with diffuse hydrothermal venting assessed by integrated meta-omics

Urich, Tim, Lanzén, Anders, Stokke, Runar, Pedersen, Rolf B., Bayer, Christoph, Thorseth, Ingunn H., Schleper, Christa, Steen, Ida H., Øvreas, Lise

Journal:

Environmental Microbiology

Year:

2014

Language:

english

File:

PDF, 1.15 MB

english, 2014

6

Comparing the anterior nare bacterial community of two discrete human populations using Illumina amplicon sequencing

Camarinha-Silva, Amélia, Jáuregui, Ruy, Chaves-Moreno, Diego, Oxley, Andrew P.A., Schaumburg, Frieder, Becker, Karsten, Wos-Oxley, Melissa L., Pieper, Dietmar H.

Journal:

Environmental Microbiology

Year:

2014

Language:

english

File:

PDF, 1006 KB

english, 2014

7

The fibre-associated cellulolytic bacterial community in the hindgut of wood-feeding higher termites ( N asutitermes spp.)

Mikaelyan, Aram, Strassert, Jürgen F. H., Tokuda, Gaku, Brune, Andreas

Journal:

Environmental Microbiology

Year:

2014

Language:

english

File:

PDF, 614 KB

english, 2014

8

Life with compass: diversity and biogeography of magnetotactic bacteria

Lin, Wei, Bazylinski, Dennis A., Xiao, Tian, Wu, Long-Fei, Pan, Yongxin

Journal:

Environmental Microbiology

Year:

2014

Language:

english

File:

PDF, 1.46 MB

english, 2014

9

Black truffle - associated bacterial communities during the development and maturation of T uber melanosporum ascocarps and putative functional roles

Antony-Babu, Sanjay, Deveau, Aurélie, Van Nostrand, Joy D., Zhou, Jizhong, Le Tacon, François, Robin, Christophe, Frey-Klett, Pascale, Uroz, Stéphane

Journal:

Environmental Microbiology

Year:

2014

Language:

english

File:

PDF, 1.21 MB

english, 2014

10

Who digests the lignocellulose?

Journal:

Environmental Microbiology

Year:

2014

Language:

english

File:

PDF, 196 KB

english, 2014

11

Bacterial communication

Wackett, Lawrence P.

Journal:

Environmental Microbiology

Year:

2014

Language:

english

File:

PDF, 90 KB

english, 2014

12

Membrane vesicle formation is associated with pyocin production under denitrifying conditions in Pseudomonas aeruginosa PAO1

Toyofuku, Masanori, Zhou, Shengmin, Sawada, Isao, Takaya, Naoki, Uchiyama, Hiroo, Nomura, Nobuhiko

Journal:

Environmental Microbiology

Year:

2014

Language:

english

File:

PDF, 403 KB

english, 2014

13

Marked seasonality of aerobic anoxygenic phototrophic bacteria in the coastal NW Mediterranean Sea as revealed by cell abundance, pigment concentration and pyrosequencing of pufM gene

Ferrera, Isabel, Borrego, Carles M., Salazar, Guillem, Gasol, Josep M.

Journal:

Environmental Microbiology

Year:

2014

Language:

english

File:

PDF, 470 KB

english, 2014

14

Metagenomic characterization of ‘ C andidatus Defluviicoccus tetraformis strain TFO71’, a tetrad-forming organism, predominant in an anaerobic-aerobic membrane bioreactor with deteriorated biological phosphorus removal

Nobu, Masaru K., Tamaki, Hideyuki, Kubota, Kengo, Liu, Wen-Tso

Journal:

Environmental Microbiology

Year:

2014

Language:

english

File:

PDF, 779 KB

english, 2014

15

Pyrosequencing for assessing diversity of eukaryotic microbes: analysis of data on marine planktonic ciliates and comparison with traditional methods

Santoferrara, Luciana F., Grattepanche, Jean-David, Katz, Laura A., McManus, George B.

Journal:

Environmental Microbiology

Year:

2014

Language:

english

File:

PDF, 731 KB

english, 2014

16

Exploring A nopheles gut bacteria for P lasmodium blocking activity

Bahia, Ana C., Dong, Yuemei, Blumberg, Benjamin J., Mlambo, Godfree, Tripathi, Abhai, BenMarzouk-Hidalgo, Omar J., Chandra, Ramesh, Dimopoulos, George

Journal:

Environmental Microbiology

Year:

2014

Language:

english

File:

PDF, 990 KB

english, 2014

17

Diet alters probiotic L actobacillus persistence and function in the intestine

Tachon, Sybille, Lee, Bokyung, Marco, Maria L.

Journal:

Environmental Microbiology

Year:

2014

Language:

english

File:

PDF, 780 KB

english, 2014

18

Gastric microbiota is altered in oesophagitis and Barrett's oesophagus and further modified by proton pump inhibitors

Amir, Itay, Konikoff, Fred M., Oppenheim, Michal, Gophna, Uri, Half, Elizabeth E.

Journal:

Environmental Microbiology

Year:

2014

Language:

english

File:

PDF, 1.42 MB

english, 2014

19

Root microbiome relates to plant host evolution in maize and other Poaceae

Bouffaud, Marie-Lara, Poirier, Marie-Andrée, Muller, Daniel, Moënne-Loccoz, Yvan

Journal:

Environmental Microbiology

Year:

2014

Language:

english

File:

PDF, 228 KB

english, 2014

20

Productivity and salinity structuring of the microplankton revealed by comparative freshwater metagenomics

Eiler, Alexander, Zaremba-Niedzwiedzka, Katarzyna, Martínez-García, Manuel, McMahon, Katherine D., Stepanauskas, Ramunas, Andersson, Siv G. E., Bertilsson, Stefan

Journal:

Environmental Microbiology

Year:

2014

Language:

english

File:

PDF, 762 KB

english, 2014

21

Ecological coherence of diversity patterns derived from classical fingerprinting and Next Generation Sequencing techniques

Gobet, Angélique, Boetius, Antje, Ramette, Alban

Journal:

Environmental Microbiology

Year:

2014

Language:

english

File:

PDF, 615 KB

english, 2014

22

Bacterial communities and syntrophic associations involved in anaerobic oxidation of methane process of the Sonora Margin cold seeps, Guaymas Basin

Vigneron, Adrien, Cruaud, Perrine, Pignet, Patricia, Caprais, Jean-Claude, Gayet, Nicolas, Cambon-Bonavita, Marie-Anne, Godfroy, Anne, Toffin, Laurent

Journal:

Environmental Microbiology

Year:

2014

Language:

english

File:

PDF, 1.24 MB

english, 2014

23

Identification accuracy and diversity reproducibility associated with internal transcribed spacer-based fungal taxonomic library preparation

Yamamoto, Naomichi, Dannemiller, Karen C., Bibby, Kyle, Peccia, Jordan

Journal:

Environmental Microbiology

Year:

2014

Language:

english

File:

PDF, 546 KB

english, 2014

24

Songbirds as general transmitters but selective amplifiers of B orrelia burgdorferi sensu lato genotypes in I xodes rinicus ticks

Heylen, Dieter, Matthysen, Erik, Fonville, Manoj, Sprong, Hein

Journal:

Environmental Microbiology

Year:

2014

Language:

english

File:

PDF, 359 KB

english, 2014

25

Diversity and genomic insights into the uncultured C hloroflexi from the human microbiota

Campbell, Alisha G., Schwientek, Patrick, Vishnivetskaya, Tatiana, Woyke, Tanja, Levy, Shawn, Beall, Clifford J., Griffen, Ann, Leys, Eugene, Podar, Mircea

Journal:

Environmental Microbiology

Year:

2014

Language:

english

File:

PDF, 335 KB

english, 2014

26

Mild gut inflammation modulates the proteome of intestinal Escherichia coli

Schumann, Sara, Alpert, Carl, Engst, Wolfram, Klopfleisch, Robert, Loh, Gunnar, Bleich, André, Blaut, Michael

Journal:

Environmental Microbiology

Year:

2014

Language:

english

File:

PDF, 849 KB

english, 2014

27

Pyrosequencing reveals regional differences in fruit-associated fungal communities

Taylor, Michael W., Tsai, Peter, Anfang, Nicole, Ross, Howard A., Goddard, Matthew R.

Journal:

Environmental Microbiology

Year:

2014

Language:

english

File:

PDF, 514 KB

english, 2014

28

The gill chamber epibiosis of deep-sea shrimp R imicaris exoculata : an in-depth metagenomic investigation and discovery of Z etaproteobacteria

Jan, Cyrielle, Petersen, Jillian M., Werner, Johannes, Teeling, Hanno, Huang, Sixing, Glöckner, Frank Oliver, Golyshina, Olga V., Dubilier, Nicole, Golyshin, Peter N., Jebbar, Mohamed, Cambon-Bonavita

Journal:

Environmental Microbiology

Year:

2014

Language:

english

File:

PDF, 899 KB

english, 2014

29

D ebaryomyces hansenii and R hodotorula mucilaginosa comprised the yeast core gut microbiota of wild and reared carnivorous salmonids, croaker and yellowtail

Raggi, Patricia, Lopez, Paulina, Diaz, Angélica, Carrasco, Diana, Silva, Alfonso, Velez, Antonio, Opazo, Rafael, Magne, Fabien, Navarrete, Paola A.

Journal:

Environmental Microbiology

Year:

2014

Language:

english

File:

PDF, 335 KB

english, 2014

30

Herbivorous rodents ( N eotoma spp. ) harbour abundant and active foregut microbiota

Kohl, Kevin D., Miller, Aaron W., Marvin, James E., Mackie, Roderick, Dearing, M. Denise

Journal:

Environmental Microbiology

Year:

2014

Language:

english

File:

PDF, 525 KB

english, 2014

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