Volume 10; Issue 1

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Epigenetics & Chromatin
Volume 10; Issue 1

Epigenetics & Chromatin

Volume 10; Issue 1

1

Sex-specific chromatin landscapes in an ultra-compact chordate genome

Navratilova, Pavla, Danks, Gemma Barbara, Long, Abby, Butcher, Stephen, Manak, John Robert, Thompson, Eric M.

Journal:

Epigenetics & Chromatin

Year:

2017

Language:

english

File:

PDF, 5.47 MB

english, 2017

2

In utero exposure to maternal smoking is associated with DNA methylation alterations and reduced neuronal content in the developing fetal brain

Chatterton, Zac, Hartley, Brigham J., Seok, Man-Ho, Mendelev, Natalia, Chen, Sean, Milekic, Maria, Rosoklija, Gorazd, Stankov, Aleksandar, Trencevsja-Ivanovska, Iskra, Brennand, Kristen, Ge, Yongchao,

Journal:

Epigenetics & Chromatin

Year:

2017

Language:

english

File:

PDF, 2.22 MB

english, 2017

3

Histone and DNA methylation control by H3 serine 10/threonine 11 phosphorylation in the mouse zygote

Lan, Jie, Lepikhov, Konstantin, Giehr, Pascal, Walter, Joern

Journal:

Epigenetics & Chromatin

Year:

2017

Language:

english

File:

PDF, 17.31 MB

english, 2017

4

PRC2 is required for extensive reorganization of H3K27me3 during epigenetic reprogramming in mouse fetal germ cells

Prokopuk, Lexie, Stringer, Jessica M., Hogg, Kirsten, Elgass, Kirstin D., Western, Patrick S.

Journal:

Epigenetics & Chromatin

Year:

2017

Language:

english

File:

PDF, 3.76 MB

english, 2017

5

Assessing histone demethylase inhibitors in cells: lessons learned

Hatch, Stephanie B., Yapp, Clarence, Montenegro, Raquel C., Savitsky, Pavel, Gamble, Vicki, Tumber, Anthony, Ruda, Gian Filippo, Bavetsias, Vassilios, Fedorov, Oleg, Atrash, Butrus, Raynaud, Florence,

Journal:

Epigenetics & Chromatin

Year:

2017

Language:

english

File:

PDF, 8.47 MB

english, 2017

6

Silencing markers are retained on pericentric heterochromatin during murine primordial germ cell development

Magaraki, Aristea, van der Heijden, Godfried, Sleddens-Linkels, Esther, Magarakis, Leonidas, van Cappellen, Wiggert A., Peters, Antoine H. F. M., Gribnau, Joost, Baarends, Willy M., Eijpe, Maureen

Journal:

Epigenetics & Chromatin

Year:

2017

Language:

english

File:

PDF, 13.16 MB

english, 2017

7

Differential DNA methylation at conserved non-genic elements and evidence for transgenerational inheritance following developmental exposure to mono(2-ethylhexyl) phthalate and 5-azacytidine in zebrafish

Kamstra, Jorke H., Sales, Liana Bastos, Aleström, Peter, Legler, Juliette

Journal:

Epigenetics & Chromatin

Year:

2017

Language:

english

File:

PDF, 4.87 MB

english, 2017

8

Comprehensive evaluation of genome-wide 5-hydroxymethylcytosine profiling approaches in human DNA

Skvortsova, Ksenia, Zotenko, Elena, Luu, Phuc-Loi, Gould, Cathryn M., Nair, Shalima S., Clark, Susan J., Stirzaker, Clare

Journal:

Epigenetics & Chromatin

Year:

2017

Language:

english

File:

PDF, 8.65 MB

english, 2017

9

Fetal testis organ culture reproduces the dynamics of epigenetic reprogramming in rat gonocytes

Rwigemera, Arlette, Joao, Fabien, Delbes, Geraldine

Journal:

Epigenetics & Chromatin

Year:

2017

Language:

english

File:

PDF, 1.70 MB

english, 2017

10

Transcription and chromatin determinants of de novo DNA methylation timing in oocytes

Gahurova, Lenka, Tomizawa, Shin-ichi, Smallwood, Sébastien A., Stewart-Morgan, Kathleen R., Saadeh, Heba, Kim, Jeesun, Andrews, Simon R., Chen, Taiping, Kelsey, Gavin

Journal:

Epigenetics & Chromatin

Year:

2017

Language:

english

File:

PDF, 1.85 MB

english, 2017

11

DNA methylation and DNA methyltransferases

Edwards, John R., Yarychkivska, Olya, Boulard, Mathieu, Bestor, Timothy H.

Journal:

Epigenetics & Chromatin

Year:

2017

Language:

english

File:

PDF, 4.03 MB

english, 2017

12

MeDIP-seq and nCpG analyses illuminate sexually dimorphic methylation of gonadal development genes with high historic methylation in turtle hatchlings with temperature-dependent sex determination

Radhakrishnan, Srihari, Literman, Robert, Mizoguchi, Beatriz, Valenzuela, Nicole

Journal:

Epigenetics & Chromatin

Year:

2017

Language:

english

File:

PDF, 2.78 MB

english, 2017

13

Genome-wide methylation data mirror ancestry information

Elior Rahmani,Liat Shenhav,Regev Schweiger,Paul Yousefi…

Journal:

Epigenetics & Chromatin

Year:

2017

Language:

english

File:

PDF, 1.45 MB

english, 2017

14

MS_HistoneDB, a manually curated resource for proteomic analysis of human and mouse histones

Sara El Kennani,Annie Adrait,Alexey K. Shaytan,Saadi Khochbin…

Journal:

Epigenetics & Chromatin

Year:

2017

Language:

english

File:

PDF, 1.42 MB

english, 2017

15

Decoupling the downstream effects of germline nuclear RNAi reveals that H3K9me3 is dispensable for heritable RNAi and the maintenance of endogenous siRNA-mediated transcriptional silencing inCaenorhabditis elegans

Natallia Kalinava,Julie Zhouli Ni,Kimberly Peterman…

Journal:

Epigenetics & Chromatin

Year:

2017

Language:

english

File:

PDF, 9.80 MB

english, 2017

16

SMYD5 regulates H4K20me3-marked heterochromatin to safeguard ES cell self-renewal and prevent spurious differentiation

Benjamin L. Kidder,Gangqing Hu,Kairong Cui,Keji Zhao

Journal:

Epigenetics & Chromatin

Year:

2017

Language:

english

File:

PDF, 3.18 MB

english, 2017

17

Histone peptide microarray screen of chromo and Tudor domains defines new histone lysine methylation interactions

Erin K. Shanle,Stephen A. Shinsky,Joseph B. Bridgers…

Journal:

Epigenetics & Chromatin

Year:

2017

Language:

english

File:

PDF, 1.34 MB

english, 2017

18

Identification of epigenetic signature associated with alpha thalassemia/mental retardation X-linked syndrome

Laila C. Schenkel,Kristin D. Kernohan,Arran McBride…

Journal:

Epigenetics & Chromatin

Year:

2017

Language:

english

File:

PDF, 1.65 MB

english, 2017

19

Dynamics of 5-methylcytosine and 5-hydroxymethylcytosine during pronuclear development in equine zygotes produced by ICSI

Sonia Heras,Katrien Smits,Catharina De Schauwer,Ann Van Soom

Journal:

Epigenetics & Chromatin

Year:

2017

Language:

english

File:

PDF, 2.54 MB

english, 2017

20

Well-positioned nucleosomes punctuate polycistronic pol II transcription units and flank silentVSGgene arrays inTrypanosoma brucei

Johannes Petrus Maree,Megan Lindsay Povelones…

Journal:

Epigenetics & Chromatin

Year:

2017

Language:

english

File:

PDF, 2.14 MB

english, 2017

21

Flightless-I governs cell fate by recruiting the SUMO isopeptidase SENP3 to distinctHOXgenes

Arnab Nayak,Anja Reck,Christian Morsczeck,Stefan Müller

Journal:

Epigenetics & Chromatin

Year:

2017

Language:

english

File:

PDF, 3.06 MB

english, 2017

22

Internal modifications in the CENP-A nucleosome modulate centromeric dynamics

Minh Bui,Mary Pitman,Arthur Nuccio,Serene Roque…

Journal:

Epigenetics & Chromatin

Year:

2017

Language:

english

File:

PDF, 6.14 MB

english, 2017

23

Links between DNA methylation and nucleosome occupancy in the human genome

Clayton K. Collings,John N. Anderson

Journal:

Epigenetics & Chromatin

Year:

2017

Language:

english

File:

PDF, 12.13 MB

english, 2017

24

Differential DNA methylation and lymphocyte proportions in a Costa Rican high longevity region

Lisa M. McEwen,Alexander M. Morin,Rachel D. Edgar…

Journal:

Epigenetics & Chromatin

Year:

2017

Language:

english

File:

PDF, 4.98 MB

english, 2017

25

Stabilization of Foxp3 expression by CRISPR-dCas9-based epigenome editing in mouse primary T cells

Masahiro Okada,Mitsuhiro Kanamori,Kazue Someya…

Journal:

Epigenetics & Chromatin

Year:

2017

Language:

english

File:

PDF, 1.82 MB

english, 2017

26

A computational approach for the functional classification of the epigenome

Francesco Gandolfi,Anna Tramontano

Journal:

Epigenetics & Chromatin

Year:

2017

Language:

english

File:

PDF, 3.12 MB

english, 2017

27

The quest for epigenetic regulation underlying unisexual flower development inCucumis melo

David Latrasse,Natalia Y. Rodriguez-Granados…

Journal:

Epigenetics & Chromatin

Year:

2017

Language:

english

File:

PDF, 1.59 MB

english, 2017

28

Genomic imprinting does not reduce the dosage of UBE3A in neurons

Paul R. Hillman,Sarah G. B. Christian,Ryan Doan,Noah D. Cohen…

Journal:

Epigenetics & Chromatin

Year:

2017

Language:

english

File:

PDF, 3.60 MB

english, 2017

29

Site-specific regulation of histone H1 phosphorylation in pluripotent cell differentiation

Ruiqi Liao,Craig A. Mizzen

Journal:

Epigenetics & Chromatin

Year:

2017

Language:

english

File:

PDF, 2.05 MB

english, 2017

30

Dosage compensation and sex-specific epigenetic landscape of the X chromosome in the pea aphid

Gautier Richard,Fabrice Legeai,Nathalie Prunier-Leterme…

Journal:

Epigenetics & Chromatin

Year:

2017

Language:

english

File:

PDF, 2.29 MB

english, 2017

31

Asymmetric DNA methylation of CpG dyads is a feature of secondary DMRs associated with theDlk1/Gtl2imprinting cluster in mouse

Megan Guntrum,Ekaterina Vlasova,Tamara L. Davis

Journal:

Epigenetics & Chromatin

Year:

2017

Language:

english

File:

PDF, 1.39 MB

english, 2017

32

Subtracting the sequence bias from partially digested MNase-seq data reveals a general contribution of TFIIS to nucleosome positioning

Gutiérrez, Gabriel, Millán-Zambrano, Gonzalo, Medina, Daniel A., Jordán-Pla, Antonio, Pérez-Ortín, José E., Peñate, Xenia, Chávez, Sebastián

Journal:

Epigenetics & Chromatin

Year:

2017

Language:

english

File:

PDF, 2.99 MB

english, 2017

33

Pho dynamically interacts with Spt5 to facilitate transcriptional switches at the hsp70 locus

Pereira, Allwyn, Paro, Renato

Journal:

Epigenetics & Chromatin

Year:

2017

Language:

english

File:

PDF, 5.28 MB

english, 2017

34

Regions of common inter-individual DNA methylation differences in human monocytes: genetic basis and potential function

Schröder, Christopher, Leitão, Elsa, Wallner, Stefan, Schmitz, Gerd, Klein-Hitpass, Ludger, Sinha, Anupam, Jöckel, Karl-Heinz, Heilmann-Heimbach, Stefanie, Hoffmann, Per, Nöthen, Markus M., Steffens,

Journal:

Epigenetics & Chromatin

Year:

2017

Language:

english

File:

PDF, 5.33 MB

english, 2017

35

Metabolic labeling in middle-down proteomics allows for investigation of the dynamics of the histone code

Sidoli, Simone, Lu, Congcong, Coradin, Mariel, Wang, Xiaoshi, Karch, Kelly R., Ruminowicz, Chrystian, Garcia, Benjamin A.

Journal:

Epigenetics & Chromatin

Year:

2017

Language:

english

File:

PDF, 4.82 MB

english, 2017

36

Drosophila CP190- and dCTCF-mediated enhancer blocking is augmented by SUMOylation

Jox, Theresa, Buxa, Melanie K., Bohla, Dorte, Ullah, Ikram, Mačinković, Igor, Brehm, Alexander, Bartkuhn, Marek, Renkawitz, Rainer

Journal:

Epigenetics & Chromatin

Year:

2017

Language:

english

File:

PDF, 2.53 MB

english, 2017

37

Genome-wide search for Zelda-like chromatin signatures identifies GAF as a pioneer factor in early fly development

Moshe, Arbel, Kaplan, Tommy

Journal:

Epigenetics & Chromatin

Year:

2017

Language:

english

File:

PDF, 2.74 MB

english, 2017

38

Activation of the alpha-globin gene expression correlates with dramatic upregulation of nearby non-globin genes and changes in local and large-scale chromatin spatial structure

Ulianov, Sergey V., Galitsyna, Aleksandra A., Flyamer, Ilya M., Golov, Arkadiy K., Khrameeva, Ekaterina E., Imakaev, Maxim V., Abdennur, Nezar A., Gelfand, Mikhail S., Gavrilov, Alexey A., Razin, Serg

Journal:

Epigenetics & Chromatin

Year:

2017

Language:

english

File:

PDF, 2.31 MB

english, 2017

39

Vitamin C induces specific demethylation of H3K9me2 in mouse embryonic stem cells via Kdm3a/b

Ebata, Kevin T., Mesh, Kathryn, Liu, Shichong, Bilenky, Misha, Fekete, Alexander, Acker, Michael G., Hirst, Martin, Garcia, Benjamin A., Ramalho-Santos, Miguel

Journal:

Epigenetics & Chromatin

Year:

2017

Language:

english

File:

PDF, 1.68 MB

english, 2017

40

Non-genomic transmission of longevity between generations: potential mechanisms and evidence across species

Vaiserman, Alexander M., Koliada, Alexander K., Jirtle, Randy L.

Journal:

Epigenetics & Chromatin

Year:

2017

Language:

english

File:

PDF, 1.27 MB

english, 2017

41

Initial high-resolution microscopic mapping of active and inactive regulatory sequences proves non-random 3D arrangements in chromatin domain clusters

Cremer, Marion, Schmid, Volker J., Kraus, Felix, Markaki, Yolanda, Hellmann, Ines, Maiser, Andreas, Leonhardt, Heinrich, John, Sam, Stamatoyannopoulos, John, Cremer, Thomas

Journal:

Epigenetics & Chromatin

Year:

2017

Language:

english

File:

PDF, 4.83 MB

english, 2017

42

Histone 4 lysine 8 acetylation regulates proliferation and host–pathogen interaction in Plasmodium falciparum

Gupta, Archana P., Zhu, Lei, Tripathi, Jaishree, Kucharski, Michal, Patra, Alok, Bozdech, Zbynek

Journal:

Epigenetics & Chromatin

Year:

2017

Language:

english

File:

PDF, 5.96 MB

english, 2017

43

Optimized reduced representation bisulfite sequencing reveals tissue-specific mCHH islands in maize

Hsu, Fei-Man, Yen, Ming-Ren, Wang, Chi-Ting, Lin, Chien-Yu, Wang, Chung-Ju Rachel, Chen, Pao-Yang

Journal:

Epigenetics & Chromatin

Year:

2017

Language:

english

File:

PDF, 4.43 MB

english, 2017

44

Long noncoding RNAs coordinate functions between mitochondria and the nucleus

Dong, Yaru, Yoshitomi, Takeshi, Hu, Ji-Fan, Cui, Jizhe

Journal:

Epigenetics & Chromatin

Year:

2017

Language:

english

File:

PDF, 1.09 MB

english, 2017

45

Neuroepigenetic mechanisms in disease

Christopher, Michael A., Kyle, Stephanie M., Katz, David J.

Journal:

Epigenetics & Chromatin

Year:

2017

Language:

english

File:

PDF, 1.53 MB

english, 2017

46

Additional sex combs interacts with enhancer of zeste and trithorax and modulates levels of trimethylation on histone H3K4 and H3K27 during transcription of hsp70

Li, Taosui, Hodgson, Jacob W., Petruk, Svetlana, Mazo, Alexander, Brock, Hugh W.

Journal:

Epigenetics & Chromatin

Year:

2017

Language:

english

File:

PDF, 2.23 MB

english, 2017

47

Hypomethylated domain-enriched DNA motifs prepattern the accessible nucleosome organization in teleosts

Nakamura, Ryohei, Uno, Ayako, Kumagai, Masahiko, Morishita, Shinichi, Takeda, Hiroyuki

Journal:

Epigenetics & Chromatin

Year:

2017

Language:

english

File:

PDF, 1.77 MB

english, 2017

48

Application of dual reading domains as novel reagents in chromatin biology reveals a new H3K9me3 and H3K36me2/3 bivalent chromatin state

Mauser, Rebekka, Kungulovski, Goran, Keup, Corinna, Reinhardt, Richard, Jeltsch, Albert

Journal:

Epigenetics & Chromatin

Year:

2017

Language:

english

File:

PDF, 2.84 MB

english, 2017

49

Environmental epigenetics in zebrafish

Cavalieri, Vincenzo, Spinelli, Giovanni

Journal:

Epigenetics & Chromatin

Year:

2017

Language:

english

File:

PDF, 971 KB

english, 2017

50

Histone isoform H2A1H promotes attainment of distinct physiological states by altering chromatin dynamics

Bhattacharya, Saikat, Reddy, Divya, Jani, Vinod, Gadewal, Nikhil, Shah, Sanket, Reddy, Raja, Bose, Kakoli, Sonavane, Uddhavesh, Joshi, Rajendra, Gupta, Sanjay

Journal:

Epigenetics & Chromatin

Year:

2017

Language:

english

File:

PDF, 2.78 MB

english, 2017

51

NuA4 histone acetyltransferase activity is required for H4 acetylation on a dosage-compensated monosomic chromosome that confers resistance to fungal toxins

Wakabayashi, Hironao, Tucker, Christopher, Bethlendy, Gabor, Kravets, Anatoliy, Welle, Stephen L., Bulger, Michael, Hayes, Jeffrey J., Rustchenko, Elena

Journal:

Epigenetics & Chromatin

Year:

2017

Language:

english

File:

PDF, 1.24 MB

english, 2017

52

H2A O-GlcNAcylation at serine 40 functions genomic protection in association with acetylated H2AZ or γH2AX

Hayakawa, Koji, Hirosawa, Mitsuko, Tani, Ruiko, Yoneda, Chikako, Tanaka, Satoshi, Shiota, Kunio

Journal:

Epigenetics & Chromatin

Year:

2017

Language:

english

File:

PDF, 2.61 MB

english, 2017

53

Genome-wide profiling of transcribed enhancers during macrophage activation

Denisenko, Elena, Guler, Reto, Mhlanga, Musa M., Suzuki, Harukazu, Brombacher, Frank, Schmeier, Sebastian

Journal:

Epigenetics & Chromatin

Year:

2017

Language:

english

File:

PDF, 3.49 MB

english, 2017

54

Chromatin organization changes during the establishment and maintenance of the postmitotic state

Ma, Yiqin, Buttitta, Laura

Journal:

Epigenetics & Chromatin

Year:

2017

Language:

english

File:

PDF, 4.67 MB

english, 2017

55

Ubiquitin C-terminal hydrolase isozyme L1 is associated with shelterin complex at interstitial telomeric sites

Ilic, Aleksandar, Lu, Sumin, Bhatia, Vikram, Begum, Farhana, Klonisch, Thomas, Agarwal, Prasoon, Xu, Wayne, Davie, James R.

Journal:

Epigenetics & Chromatin

Year:

2017

Language:

english

File:

PDF, 2.68 MB

english, 2017

56

Correction to: NuA4 histone acetyltransferase activity is required for H4 acetylation on a dosage-compensated monosomic chromosome that confers resistance to fungal toxins

Wakabayashi, Hironao, Tucker, Christopher, Bethlendy, Gabor, Kravets, Anatoliy, Welle, Stephen L., Bulger, Michael, Hayes, Jeffrey J., Rustchenko, Elena

Journal:

Epigenetics & Chromatin

Year:

2017

Language:

english

File:

PDF, 671 KB

english, 2017

57

Phylogenetic analysis of the core histone doublet and DNA topo II genes of Marseilleviridae: evidence of proto-eukaryotic provenance

Erives, Albert J.

Journal:

Epigenetics & Chromatin

Year:

2017

Language:

english

File:

PDF, 1.95 MB

english, 2017

58

Functional dissection of Drosophila melanogaster SUUR protein influence on H3K27me3 profile

Posukh, Olga V., Maksimov, Daniil A., Laktionov, Petr P., Koryakov, Dmitry E., Belyakin, Stepan N.

Journal:

Epigenetics & Chromatin

Year:

2017

Language:

english

File:

PDF, 1.63 MB

english, 2017

59

CENP-B protects centromere chromatin integrity by facilitating histone deposition via the H3.3-specific chaperone Daxx

Morozov, Viacheslav M., Giovinazzi, Serena, Ishov, Alexander M.

Journal:

Epigenetics & Chromatin

Year:

2017

Language:

english

File:

PDF, 6.40 MB

english, 2017

60

Co-regulation of transcription by BRG1 and BRM, two mutually exclusive SWI/SNF ATPase subunits

Raab, Jesse R., Runge, John S., Spear, Camarie C., Magnuson, Terry

Journal:

Epigenetics & Chromatin

Year:

2017

Language:

english

File:

PDF, 3.15 MB

english, 2017

61

Treatment with a DNA methyltransferase inhibitor feminizes zebrafish and induces long-term expression changes in the gonads

Ribas, Laia, Vanezis, Konstantinos, Imués, Marco Antonio, Piferrer, Francesc

Journal:

Epigenetics & Chromatin

Year:

2017

Language:

english

File:

PDF, 2.07 MB

english, 2017

62

A screening system to identify transcription factors that induce binding site-directed DNA demethylation

Suzuki, Takahiro, Maeda, Shiori, Furuhata, Erina, Shimizu, Yuri, Nishimura, Hajime, Kishima, Mami, Suzuki, Harukazu

Journal:

Epigenetics & Chromatin

Year:

2017

Language:

english

File:

PDF, 2.40 MB

english, 2017

63

Uncoordinated expression of DNA methylation-related enzymes in human cancer

Liu, Jiao, Cui, Xiuliang, Jiang, Jinhua, Cao, Dan, He, Yufei, Wang, Hongyang

Journal:

Epigenetics & Chromatin

Year:

2017

Language:

english

File:

PDF, 1.27 MB

english, 2017

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