Volume 12

Evolutionary Bioinformatics

Volume 12

1

Estimating Divergence Times and Substitution Rates in Rhizobia

Chriki-Adeeb, Rim, Chriki, Ali

Journal:

Evolutionary Bioinformatics

Year:

2016

Language:

english

File:

PDF, 613 KB

english, 2016

2

Current Bacterial Gene Encoding Capsule Biosynthesis Protein CapI Contains Nucleotides Derived from Exonization

Wang, Yong, Tao, Xia-Fang, Su, Zhi-Xi, Liu, A-Ke, Liu, Tian-Lei, Sun, Ling, Yao, Qin, Chen, Ke-Ping, Gu, Xun

Journal:

Evolutionary Bioinformatics

Year:

2016

Language:

english

File:

PDF, 3.55 MB

english, 2016

3

Phi Class of Glutathione S-transferase Gene Superfamily Widely Exists in Nonplant Taxonomic Groups

Munyampundu, Jean-Pierre, Xu, You-Ping, Cai, Xin-Zhong

Journal:

Evolutionary Bioinformatics

Year:

2016

Language:

english

File:

PDF, 4.43 MB

english, 2016

4

HTSFinder: Powerful Pipeline of DNA Signature Discovery by Parallel and Distributed Computing

Karimi, Ramin, Hajdu, Andras

Journal:

Evolutionary Bioinformatics

Year:

2016

Language:

english

File:

PDF, 1.87 MB

english, 2016

5

NABIC: A New Access Portal to Search, Visualize, and Share Agricultural Genomics Data

Seol, Young-Joo, Lee, Tae-Ho, Park, Dong-Suk, Kim, Chang-Kug

Journal:

Evolutionary Bioinformatics

Year:

2016

Language:

english

File:

PDF, 1.60 MB

english, 2016

6

pATsi: Paralogs and Singleton Genes from Arabidopsis thaliana

Ambrosino, Luca, Bostan, Hamed, di Salle, Pasquale, Sangiovanni, Mara, vigilante, Alessandra, Chiusano, Maria L.

Journal:

Evolutionary Bioinformatics

Year:

2016

Language:

english

File:

PDF, 4.27 MB

english, 2016

7

Structural Diversity of a Novel LTR Retrotransposon, RTPOSON , in the Genus Oryza

Hsu, Yu-Chia, Wang, Chang-Sheng, Lin, Yann-Rong, Wu, Yong-Pei

Journal:

Evolutionary Bioinformatics

Year:

2016

Language:

english

File:

PDF, 3.27 MB

english, 2016

8

Support Vector Machines Trained with Evolutionary Algorithms Employing Kernel Adatron for Large Scale Classification of Protein Structures

Arana-Daniel, Nancy, Gallegos, Alberto A., López-Franco, Carlos, Alanís, Alma Y., Morales, Jacob, López-Franco, Adriana

Journal:

Evolutionary Bioinformatics

Year:

2016

Language:

english

File:

PDF, 1.99 MB

english, 2016

9

Notes on the Statistical Power of the Binary State Speciation and Extinction (BiSSE) Model

Gamisch, Alexander

Journal:

Evolutionary Bioinformatics

Year:

2016

Language:

english

File:

PDF, 1000 KB

english, 2016

10

Revisiting Myosin Families through Large-scale Sequence Searches Leads to the Discovery of New Myosins

Pasha, Shaik Naseer, Meenakshi, Iyer, Sowdhamini, Ramanathan

Journal:

Evolutionary Bioinformatics

Year:

2016

Language:

english

File:

PDF, 2.30 MB

english, 2016

11

The Simple Chordate Ciona intestinalis Has a Reduced Complement of Genes Associated with Fanconi Anemia

Stanley, Edward C., Azzinaro, Paul A., Vierra, David A., Howlett, Niall G., Irvine, Steven Q.

Journal:

Evolutionary Bioinformatics

Year:

2016

Language:

english

File:

PDF, 5.31 MB

english, 2016

12

Molecular Evolution of the Yersinia Major Outer Membrane Protein C (OmpC)

Stenkova, Anna M., Bystritskaya, Evgeniya P., Guzev, Konstantin V., Rakin, Alexander V., Isaeva, Marina P.

Journal:

Evolutionary Bioinformatics

Year:

2016

Language:

english

File:

PDF, 2.92 MB

english, 2016

13

Phylogenetic and Structural Analysis of Polyketide Synthases in Aspergilli

Bhetariya, Preetida J., Prajapati, Madhvi, Bhaduri, Asani, Mandal, Rahul Shubhra, Varma, Anupam, Madan, Taruna, Singh, Yogendra, Sarma, P. Usha

Journal:

Evolutionary Bioinformatics

Year:

2016

Language:

english

File:

PDF, 3.94 MB

english, 2016

14

Genome-Wide Analysis of NBS-LRR Genes in Sorghum Genome Revealed Several Events Contributing to NBS-LRR Gene Evolution in Grass Species

Yang, Xiping, Wang, Jianping

Journal:

Evolutionary Bioinformatics

Year:

2016

Language:

english

File:

PDF, 3.37 MB

english, 2016

15

Diversity and Evolution of Disease Resistance Genes in Barley ( Hordeum vulgare L.)

Andersen, Ethan J., Ali, Shaukat, Reese, R. Neil, Yen, Yang, Neupane, Surendra, Nepal, Madhav P.

Journal:

Evolutionary Bioinformatics

Year:

2016

Language:

english

File:

PDF, 1.88 MB

english, 2016

16

A Novel Method for Alignment-free DNA Sequence Similarity Analysis Based on the Characterization of Complex Networks

Zhou, Jie, Zhong, Pianyu, Zhang, Tinghui

Journal:

Evolutionary Bioinformatics

Year:

2016

Language:

english

File:

PDF, 1.77 MB

english, 2016

17

A Multilayered Screening Method for the Identification of Regulatory Genes in Rice by Agronomic Traits

Seol, Young-Joo, Won, So Youn, Shin, Younhee, Lee, Jong-Yeol, Chun, Jong-Sik, Kim, Yong-Kab, Kim, Chang-Kug

Journal:

Evolutionary Bioinformatics

Year:

2016

Language:

english

File:

PDF, 1.93 MB

english, 2016

18

EvalMSA: A Program to Evaluate Multiple Sequence Alignments and Detect Outliers

Chiner-Oms, Alvaro, González-Candelas, Fernando

Journal:

Evolutionary Bioinformatics

Year:

2016

Language:

english

File:

PDF, 730 KB

english, 2016

19

Coevolution of RAC Small GTPases and their Regulators GEF Proteins

Jiménez-Sánchez, Alejandro

Journal:

Evolutionary Bioinformatics

Year:

2016

Language:

english

File:

PDF, 857 KB

english, 2016

20

Comparative Transcriptome Analysis Reveals Substantial Tissue Specificity in Human Aortic Valve

Wang, Jun, Wang, Ying, Gu, Weidong, Ni, Buqing, Sun, Haoliang, Yu, Tong, Gu, Wanjun, Chen, Liang, Shao, Yongfeng

Journal:

Evolutionary Bioinformatics

Year:

2016

Language:

english

File:

PDF, 1.72 MB

english, 2016

21

MultiSyn: A Webtool for Multiple Synteny Detection and Visualization of User's Sequence of Interest Compared to Public Plant Species

Baek, Jeong-Ho, Kim, Junah, Kim, Chang-Kug, Sohn, Seong-Han, Choi, Dongsu, Ratnaparkhe, Milind B., Kim, Do-Wan, Lee, Tae-Ho

Journal:

Evolutionary Bioinformatics

Year:

2016

Language:

english

File:

PDF, 1.69 MB

english, 2016

22

IBBOMSA: An Improved Biogeography-based Approach for Multiple Sequence Alignment

Yadav, Rohit Kumar, Banka, Haider

Journal:

Evolutionary Bioinformatics

Year:

2016

File:

PDF, 1.02 MB

2016

23

A Polyglot Approach to Bioinformatics Data Integration: A Phylogenetic Analysis of HIV-1

Reisman, Steven, Hatzopoulos, Thomas, Läufer, Konstantin, Thiruvathukal, George K., Putonti, Catherine

Journal:

Evolutionary Bioinformatics

Year:

2016

File:

PDF, 2.16 MB

2016

24

A Bioinformatics Approach for Detecting Repetitive Nested Motifs using Pattern Matching

Romero, José R., Carballido, Jessica A., Garbus, Ingrid, Echenique, Viviana C., Ponzoni, Ignacio

Journal:

Evolutionary Bioinformatics

Year:

2016

File:

PDF, 1.07 MB

2016

25

Approaching Long Genomic Regions and Large Recombination Rates with msParSm as an Alternative to MaCS

Montemuiño, Carlos, Espinosa, Antonio, Moure, Juan C., Vera, Gonzalo, Hernández, Porfidio, Ramos-Onsins, Sebastián

Journal:

Evolutionary Bioinformatics

Year:

2016

File:

PDF, 1.11 MB

2016

26

Genome Sequence and Analysis of Peptoclostridium difficile Strain ZJCDC-S82

Luo, Yun, Huang, Chen, Ye, Julian, Fang, Weijia, Gu, Wanjun, Chen, Zhiping, Li, Hui, Wang, XianJun, Jin, Dazhi

Journal:

Evolutionary Bioinformatics

Year:

2016

File:

PDF, 1.22 MB

2016

27

Partitional Classification: A Complement to Phylogeny

Salomon, Marc, Dassy, Bruno

Journal:

Evolutionary Bioinformatics

Year:

2016

Language:

english

File:

PDF, 563 KB

english, 2016

28

Genomics Study of Mycobacterium tuberculosis Strains from Different Ethnic Populations in Taiwan

Dou, Horng-Yunn, Chen, Yin-Yuan, Chen, Ying-Tsong, Chang, Jia-Ru, Lin, Chien-Hsing, Wu, Ken-Ming, Lin, Ming-Shian, Su, Ih-Jen, Tsai, Shih-Feng

Journal:

Evolutionary Bioinformatics

Year:

2016

Language:

english

File:

PDF, 468 KB

english, 2016

29

Prefiltering Model for Homology Detection Algorithms on GPU

Retamosa, Germán, de Pedro, Luis, González, Ivan, Tamames, Javier

Journal:

Evolutionary Bioinformatics

Year:

2016

Language:

english

File:

PDF, 658 KB

english, 2016

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