Volume 5

Frontiers in Neuroinformatics

Volume 5

1

Integrating Temporal and Spatial Scales: Human Structural Network Motifs Across Age and Region of Interest Size

Echtermeyer, Christoph, Han, Cheol E., Rotarska-Jagiela, Anna, Mohr, Harald, Uhlhaas, Peter J., Kaiser, Marcus

Journal:

Frontiers in Neuroinformatics

Year:

2011

Language:

english

File:

PDF, 1.69 MB

english, 2011

2

Brian Hears: Online Auditory Processing Using Vectorization Over Channels

Fontaine, Bertrand, Goodman, Dan F. M., Benichoux, Victor, Brette, Romain

Journal:

Frontiers in Neuroinformatics

Year:

2011

Language:

english

File:

PDF, 1.92 MB

english, 2011

3

Tools for brain-computer interaction: a general concept for a hybrid BCI

Müller-Putz, Gernot R.

Journal:

Frontiers in Neuroinformatics

Year:

2011

Language:

english

File:

PDF, 1.32 MB

english, 2011

4

Splash: A Software Tool for Stereotactic Planning of Recording Chamber Placement and Electrode Trajectories

Sperka, Daniel J., Ditterich, Jochen

Journal:

Frontiers in Neuroinformatics

Year:

2011

Language:

english

File:

PDF, 3.26 MB

english, 2011

5

Digital Atlas of Anatomical Subdivisions and Boundaries of the Rat Hippocampal Region

Kjonigsen, Lisa J., Leergaard, Trygve B., Witter, Menno P., Bjaalie, Jan G.

Journal:

Frontiers in Neuroinformatics

Year:

2011

Language:

english

File:

PDF, 1.06 MB

english, 2011

6

The Connectome Viewer Toolkit: An Open Source Framework to Manage, Analyze, and Visualize Connectomes

Gerhard, Stephan, Daducci, Alessandro, Lemkaddem, Alia, Meuli, Reto, Thiran, Jean-Philippe, Hagmann, Patric

Journal:

Frontiers in Neuroinformatics

Year:

2011

Language:

english

File:

PDF, 2.20 MB

english, 2011

7

Informatics and Data Mining Tools and Strategies for the Human Connectome Project

Marcus, Daniel S., Harwell, John, Olsen, Timothy, Hodge, Michael, Glasser, Matthew F., Prior, Fred, Jenkinson, Mark, Laumann, Timothy, Curtiss, Sandra W., Van Essen, David C.

Journal:

Frontiers in Neuroinformatics

Year:

2011

Language:

english

File:

PDF, 1.23 MB

english, 2011

8

Potential Synaptic Connectivity of Different Neurons onto Pyramidal Cells in a 3D Reconstruction of the Rat Hippocampus

Ropireddy, Deepak, Ascoli, Giorgio A.

Journal:

Frontiers in Neuroinformatics

Year:

2011

Language:

english

File:

PDF, 1.84 MB

english, 2011

9

On the Influence of Amplitude on the Connectivity between Phases

Daffertshofer, Andreas, van Wijk, Bernadette C. M.

Journal:

Frontiers in Neuroinformatics

Year:

2011

Language:

english

File:

PDF, 1.79 MB

english, 2011

10

The Retrosplenial Cortex: Intrinsic Connectivity and Connections with the (Para)Hippocampal Region in the Rat. An Interactive Connectome

Sugar, Jørgen, Witter, Menno P., van Strien, Niels M., Cappaert, Natalie L. M.

Journal:

Frontiers in Neuroinformatics

Year:

2011

Language:

english

File:

PDF, 1.28 MB

english, 2011

11

Neuroscience Runs on GNU/Linux

Hanke, Michael, Halchenko, Yaroslav O.

Journal:

Frontiers in Neuroinformatics

Year:

2011

Language:

english

File:

PDF, 538 KB

english, 2011

12

GenNet: A Platform for Hybrid Network Experiments

Kispersky, Tilman J., Economo, Michael N., Randeria, Pratik, White, John A.

Journal:

Frontiers in Neuroinformatics

Year:

2011

Language:

english

File:

PDF, 848 KB

english, 2011

13

Large-Scale Analysis of Gene Expression and Connectivity in the Rodent Brain: Insights through Data Integration

French, Leon, Tan, Powell Patrick Cheng, Pavlidis, Paul

Journal:

Frontiers in Neuroinformatics

Year:

2011

Language:

english

File:

PDF, 930 KB

english, 2011

14

Nipype: A Flexible, Lightweight and Extensible Neuroimaging Data Processing Framework in Python

Gorgolewski, Krzysztof, Burns, Christopher D., Madison, Cindee, Clark, Dav, Halchenko, Yaroslav O., Waskom, Michael L., Ghosh, Satrajit S.

Journal:

Frontiers in Neuroinformatics

Year:

2011

Language:

english

File:

PDF, 1.96 MB

english, 2011

15

Bivariate and Multivariate NeuroXidence: A Robust and Reliable Method to Detect Modulations of Spike?Spike Synchronization Across Experimental Conditions

Wu, Wei, Wheeler, Diek W., Pipa, Gordon

Journal:

Frontiers in Neuroinformatics

Year:

2011

Language:

english

File:

PDF, 1.10 MB

english, 2011

16

An Ultrascalable Solution to Large-scale Neural Tissue Simulation

Kozloski, James, Wagner, John

Journal:

Frontiers in Neuroinformatics

Year:

2011

Language:

english

File:

PDF, 2.38 MB

english, 2011

17

A Bottom-up Approach to Data Annotation in Neurophysiology

Grewe, Jan, Wachtler, Thomas, Benda, Jan

Journal:

Frontiers in Neuroinformatics

Year:

2011

Language:

english

File:

PDF, 1.35 MB

english, 2011

18

The Cognitive Atlas: Toward a Knowledge Foundation for Cognitive Neuroscience

Poldrack, Russell A., Kittur, Aniket, Kalar, Donald, Miller, Eric, Seppa, Christian, Gil, Yolanda, Parker, D. Stott, Sabb, Fred W., Bilder, Robert M.

Journal:

Frontiers in Neuroinformatics

Year:

2011

Language:

english

File:

PDF, 2.03 MB

english, 2011

19

Hierarchical information-based clustering for connectivity-based cortex parcellation

Journal:

Frontiers in Neuroinformatics

Year:

2011

Language:

english

File:

PDF, 1.25 MB

english, 2011

20

An Efficient Simulation Environment for Modeling Large-Scale Cortical Processing

Richert, Micah, Nageswaran, Jayram Moorkanikara, Dutt, Nikil, Krichmar, Jeffrey L.

Journal:

Frontiers in Neuroinformatics

Year:

2011

Language:

english

File:

PDF, 2.09 MB

english, 2011

21

Modeling the Connectome of a Simple Spinal Cord

Borisyuk, Roman, al Azad, Abul Kalam, Conte, Deborah, Roberts, Alan, Soffe, Stephen R.

Journal:

Frontiers in Neuroinformatics

Year:

2011

Language:

english

File:

PDF, 1.99 MB

english, 2011

22

Tracing Activity Across the Whole Brain Neural Network with Optogenetic Functional Magnetic Resonance Imaging

Journal:

Frontiers in Neuroinformatics

Year:

2011

Language:

english

File:

PDF, 810 KB

english, 2011

23

High Dimensional Classification of Structural MRI Alzheimer?s Disease Data Based on Large Scale Regularization

Casanova, Ramon, Whitlow, Christopher T., Wagner, Benjamin, Williamson, Jeff, Shumaker, Sally A., Maldjian, Joseph A., Espeland, Mark A.

Journal:

Frontiers in Neuroinformatics

Year:

2011

Language:

english

File:

PDF, 622 KB

english, 2011

24

Automated probabilistic reconstruction of white-matter pathways in health and disease using an atlas of the underlying anatomy

Yendiki, Anastasia

Journal:

Frontiers in Neuroinformatics

Year:

2011

Language:

english

File:

PDF, 1.14 MB

english, 2011

25

Knowledge Synthesis with Maps of Neural Connectivity

Tallis, Marcelo, Thompson, Richard, Russ, Thomas A., Burns, Gully A. P. C.

Journal:

Frontiers in Neuroinformatics

Year:

2011

Language:

english

File:

PDF, 1.32 MB

english, 2011

26

Data Ontology and an Information System Realization for Web-Based Management of Image Measurements

Prodanov, Dimiter

Journal:

Frontiers in Neuroinformatics

Year:

2011

Language:

english

File:

PDF, 2.10 MB

english, 2011

27

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Valdés-Hernández, Pedro Antonio

Journal:

Frontiers in Neuroinformatics

Year:

2011

Language:

english

File:

PDF, 2.88 MB

english, 2011

28

Microstructural analysis of human white matter architecture using polarized light imaging: views from neuroanatomy

Journal:

Frontiers in Neuroinformatics

Year:

2011

Language:

english

File:

PDF, 1.78 MB

english, 2011

29

Multiscale Exploration of Mouse Brain Microstructures Using the Knife-Edge Scanning Microscope Brain Atlas

Chung, Ji Ryang, Sung, Chul, Mayerich, David, Kwon, Jaerock, Miller, Daniel E., Huffman, Todd, Keyser, John, Abbott, Louise C., Choe, Yoonsuck

Journal:

Frontiers in Neuroinformatics

Year:

2011

Language:

english

File:

PDF, 2.26 MB

english, 2011

30

The Clinical Assessment and Remote Administration Tablet

Turner, Jessica A., Lane, Susan R., Bockholt, H. Jeremy, Calhoun, Vince D.

Journal:

Frontiers in Neuroinformatics

Year:

2011

Language:

english

File:

PDF, 1.44 MB

english, 2011

31

On the Estimation of Population-Specific Synaptic Currents from Laminar Multielectrode Recordings

Gratiy, Sergey L., Devor, Anna, Einevoll, Gaute T., Dale, Anders M.

Journal:

Frontiers in Neuroinformatics

Year:

2011

Language:

english

File:

PDF, 1.46 MB

english, 2011

32

COINS: An Innovative Informatics and Neuroimaging Tool Suite Built for Large Heterogeneous Datasets

Scott, Adam, Courtney, Will, Wood, Dylan, de la Garza, Raul, Lane, Susan, King, Margaret, Wang, Runtang, Roberts, Jody, Turner, Jessica A., Calhoun, Vince D.

Journal:

Frontiers in Neuroinformatics

Year:

2011

Language:

english

File:

PDF, 1.37 MB

english, 2011

33

High-Resolution Fiber Tract Reconstruction in the Human Brain by Means of Three-Dimensional Polarized Light Imaging

Axer, Markus, Grässel, David, Kleiner, Melanie, Dammers, Jürgen, Dickscheid, Timo, Reckfort, Julia, Hütz, Tim, Eiben, Björn, Pietrzyk, Uwe, Zilles, Karl, Amunts, Katrin

Journal:

Frontiers in Neuroinformatics

Year:

2011

Language:

english

File:

PDF, 1.32 MB

english, 2011

34

Meeting the Memory Challenges of Brain-Scale Network Simulation

Kunkel, Susanne, Potjans, Tobias C., Eppler, Jochen M., Plesser, Hans Ekkehard, Morrison, Abigail, Diesmann, Markus

Journal:

Frontiers in Neuroinformatics

Year:

2012

Language:

english

File:

PDF, 691 KB

english, 2012

35

Channelpedia: An Integrative and Interactive Database for Ion Channels

Ranjan, Rajnish, Khazen, Georges, Gambazzi, Luca, Ramaswamy, Srikanth, Hill, Sean L., Schürmann, Felix, Markram, Henry

Journal:

Frontiers in Neuroinformatics

Year:

2011

Language:

english

File:

PDF, 1.14 MB

english, 2011

36

LORIS: a web-based data management system for multi-center studies

Das, Samir, Zijdenbos, Alex P., Harlap, Jonathan, Vins, Dario, Evans, Alan C.

Journal:

Frontiers in Neuroinformatics

Year:

2012

Language:

english

File:

PDF, 1.78 MB

english, 2012