Volume 441; Issue 1-2

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Volume 441; Issue 1-2

Gene

Volume 441; Issue 1-2

1

Eukaryotic origin of glyceraldehyde-3-phosphate dehydrogenase genes in Clostridium thermocellum and Clostridium cellulolyticum genomes and putative fates of the exogenous gene in the subsequent genome evolution

Kiyotaka Takishita, Yuji Inagaki

Journal:

Year:

2009

Language:

english

File:

PDF, 1.29 MB

english, 2009

2

A likelihood look at the supermatrix–supertree controversy

Fengrong Ren, Hiroshi Tanaka, Ziheng Yang

Journal:

Year:

2009

Language:

english

File:

PDF, 311 KB

english, 2009

3

Tracing back EFL gene evolution in the cryptomonads–haptophytes assemblage: Separate origins of EFL genes in haptophytes, photosynthetic cryptomonads, and goniomonads

Miako Sakaguchi, Kiyotaka Takishita, Takuya Matsumoto, Tetsuo Hashimoto, Yuji Inagaki

Journal:

Year:

2009

Language:

english

File:

PDF, 667 KB

english, 2009

4

Effect of taxon sampling on recovering the phylogeny of squamate reptiles based on complete mitochondrial genome and nuclear gene sequence data

Eva M. Albert, Diego San Mauro, Mario García-París, Lukas Rüber, Rafael Zardoya

Journal:

Year:

2009

Language:

english

File:

PDF, 1.30 MB

english, 2009

5

Characterization of pairwise and multiple sequence alignment errors

Giddy Landan, Dan Graur

Journal:

Year:

2009

Language:

english

File:

PDF, 1.31 MB

english, 2009

6

Mitogenomic perspectives into iguanid phylogeny and biogeography: Gondwanan vicariance for the origin of Madagascan oplurines

Yasuhisa Okajima, Yoshinori Kumazawa

Journal:

Year:

2009

Language:

english

File:

PDF, 1.31 MB

english, 2009

7

Duplication and adaptive evolution of the COR15 genes within the highly cold-tolerant Draba lineage (Brassicaceae)

Dangwei Zhou, Jie Zhou, Lihua Meng, Qingbiao Wang, He Xie, Yucheng Guan, Zeyang Ma, Yang Zhong, Fan Chen, Jianquan Liu

Journal:

Year:

2009

Language:

english

File:

PDF, 959 KB

english, 2009

8

Electric charge divergence in proteins: insights into the evolution of their three-dimensional properties

Yukuto Sato, Mutsumi Nishida

Journal:

Year:

2009

Language:

english

File:

PDF, 1.47 MB

english, 2009

9

A simple method for phylogenomic inference using the information of gene content of genomes

Hongmei Zhang, Yang Zhong, Bailin Hao, Xun Gu

Journal:

Year:

2009

Language:

english

File:

PDF, 310 KB

english, 2009

10

Estimates of natural selection due to protein tertiary structure inform the ancestry of biallelic loci

Sang Chul Choi, Eric A. Stone, Hirohisa Kishino, Jeffrey L. Thorne

Journal:

Year:

2009

Language:

english

File:

PDF, 521 KB

english, 2009

11

Screening the V2R-type putative odorant receptor gene repertoire in bitterling Tanakia lanceolata

Yasuyuki Hashiguchi, Mutsumi Nishida

Journal:

Year:

2009

Language:

english

File:

PDF, 619 KB

english, 2009

12

Effect of site-specific heterogeneous evolution on phylogenetic reconstruction: A simple evaluation

Qiqun Cheng, Zhixi Su, Yang Zhong, Xun Gu

Journal:

Year:

2009

Language:

english

File:

PDF, 740 KB

english, 2009

13

Branch-length estimation bias misleads molecular dating for a vertebrate mitochondrial phylogeny

Matthew J. Phillips

Journal:

Year:

2009

Language:

english

File:

PDF, 732 KB

english, 2009

14

Molecular phylogeny and evolution of prosimians based on complete sequences of mitochondrial DNAs

Atsushi Matsui, Felix Rakotondraparany, Isao Munechika, Masami Hasegawa, Satoshi Horai

Journal:

Year:

2009

Language:

english

File:

PDF, 1.58 MB

english, 2009

15

Complete nucleotide sequence and gene arrangement of the mitochondrial genome of the crab-eating frog Fejervarya cancrivora and evolutionary implications

Zhumei Ren, Bin Zhu, Enbo Ma, Jun Wen, Tieyao Tu, Ying Cao, Masami Hasegawa, Yang Zhong

Journal:

Year:

2009

Language:

english

File:

PDF, 813 KB

english, 2009

16

Molecular systematics and evolution of the recently discovered “Parnassian” butterfly (Parnassius davydovi Churkin, 2006) and its allied species (Lepidoptera, Papilionidae)

Keiichi Omoto, Takahiro Yonezawa, Tsutomu Shinkawa

Journal:

Year:

2009

Language:

english

File:

PDF, 1.20 MB

english, 2009

17

Population structure of two closely related pelagic cichlids in Lake Victoria, Haplochromis pyrrhocephalus and H. laparogramma

Kaoru Maeda, Miyuki Takeda, Koichi Kamiya, Mitsuto Aibara, Semvua Isa Mzighani, Mutsumi Nishida, Shinji Mizoiri, Tetsu Sato, Yohey Terai, Norihiro Okada, Hidenori Tachida

Journal:

Year:

2009

Language:

english

File:

PDF, 430 KB

english, 2009

18

Extensive analysis of EST sequences reveals that all cichlid species in Lake Victoria share almost identical transcript sets

Naoki Kobayashi, Masakatsu Watanabe, Tokumasa Horiike, Yuji Kohara, Norihiro Okada

Journal:

Year:

2009

Language:

english

File:

PDF, 472 KB

english, 2009

19

The evolution of two partner LINE/SINE families and a full-length chromodomain-containing Ty3/Gypsy LTR element in the first reptilian genome of Anolis carolinensis

Oliver Piskurek, Hidenori Nishihara, Norihiro Okada

Journal:

Year:

2009

Language:

english

File:

PDF, 1.18 MB

english, 2009

20

Characterization and evolutionary landscape of AmnSINE1 in Amniota genomes

Mika Hirakawa, Hidenori Nishihara, Minoru Kanehisa, Norihiro Okada

Journal:

Year:

2009

Language:

english

File:

PDF, 1.69 MB

english, 2009

21

Chronology of the extant African elephant species and case study of the species identification of the small African elephant with the molecular phylogenetic method

Yumie Murata, Takahiro Yonezawa, Ichiro Kihara, Toshihide Kashiwamura, Yuji Sugihara, Masato Nikaido, Norihiro Okada, Hideki Endo, Masami Hasegawa

Journal:

Year:

2009

Language:

english

File:

PDF, 1.53 MB

english, 2009

22

The monophyletic origin of sea lions and fur seals (Carnivora; Otariidae) in the Southern Hemisphere

Takahiro Yonezawa, Naoki Kohno, Masami Hasegawa

Journal:

Year:

2009

Language:

english

File:

PDF, 1.61 MB

english, 2009

23

Special issue on phylogenomics and its future

Journal:

Year:

2009

Language:

english

File:

PDF, 102 KB

english, 2009

24

Editorial Board

Journal:

Year:

2009

Language:

english

File:

PDF, 429 KB

english, 2009

25

Adaptive evolution of rbcL in Conocephalum (Hepaticae, bryophytes)

Hidetsugu Miwa, Ireneusz J. Odrzykoski, Atsushi Matsui, Masami Hasegawa, Hiroyuki Akiyama, Yu Jia, Renat Sabirov, Hideki Takahashi, David E. Boufford, Noriaki Murakami

Journal:

Year:

2009

Language:

english

File:

PDF, 454 KB

english, 2009

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